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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403909 (53 seq.)
>W1711009036
LQQL01000208
Bacillota
Weissella sp. DD23 [LQQL]
1260
1333
+
Gln
CTG
[ENA]
¡û
>W1711168468
LVYB01000008
Bacillota
Weissella cibaria [LVYB]
51728
51655
-
Gln
CTG
[ENA]
¡û
>W1711572617
MNBZ01000025
Bacillota
Weissella confusa [MNBZ]
57197
57124
-
Gln
CTG
[ENA]
¡û
>W1711999907
NDXJ01000011
Bacillota
Weissella cibaria [NDXJ]
48483
48556
+
Gln
CTG
[ENA]
¡û
>C171026204
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
928607
928680
+
Gln
CTG
-
¡û
>C171029782
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
467965
468038
+
Gln
CTG
-
¡û
>C171029868
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
478450
478523
+
Gln
CTG
-
¡û
>WENV181515746
OGGW01019781
[OGGW] metagenome; Human gut stool
674
747
+
Gln
CTG
[ENA]
¢þ
>W141240376
CAGH01000012
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
32552
32479
-
Gln
CTG
[ENA]
¡û
>WENV183788984
PPYF01372509
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2199
2272
+
Gln
CTG
[ENA]
¢þ
>C181047672
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
2114697
2114624
-
Gln
CTG
-
¡û
>C181069772
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1261124
1261051
-
Gln
CTG
-
¡û
>C181152855
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2074149
2074222
+
Gln
CTG
-
¡û
>C191051614
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
385424
385497
+
Gln
CTG
-
¡û
>C191051697
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
397464
397537
+
Gln
CTG
-
¡û
>C191137884
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1957347
1957274
-
Gln
CTG
-
¡û
>C191188482
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
1017928
1017855
-
Gln
CTG
-
¡û
>W1910178052
BJEF01000001
Bacillota
Weissella cibaria JCM 12495 [BJEF]
237931
237858
-
Gln
CTG
[ENA]
¡û
>W1910401469
FUWE01000033
Bacillota
Weissella confusa AB3E41 [FUWE]
79488
79415
-
Gln
CTG
[ENA]
¡û
>W1910638447
LRRC01000015
Bacillota
Weissella cibaria 110 [LRRC]
215832
215759
-
Gln
CTG
[ENA]
¡û
>W1911634677
PVRY01000005
Bacillota
Weissella confusa CCUG 61560 [PVRY]
70152
70225
+
Gln
CTG
[ENA]
¡û
>W1911634752
PVRZ01000003
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
148431
148504
+
Gln
CTG
[ENA]
¡û
>W1911634828
PVSA01000003
Bacillota
Weissella confusa CCUG 39518 [PVSA]
162314
162387
+
Gln
CTG
[ENA]
¡û
>W1911634908
PVSB01000004
Bacillota
Weissella confusa CCUG 37938 [PVSB]
70154
70227
+
Gln
CTG
[ENA]
¡û
>W1911634983
PVSC01000002
Bacillota
Weissella confusa CCUG 36556 [PVSC]
146500
146573
+
Gln
CTG
[ENA]
¡û
>W1911635059
PVSD01000003
Bacillota
Weissella confusa CCUG 30969 [PVSD]
149060
149133
+
Gln
CTG
[ENA]
¡û
>W1911635137
PVSE01000004
Bacillota
Weissella confusa F71 [PVSE]
161278
161351
+
Gln
CTG
[ENA]
¡û
>W1911635213
PVSF01000003
Bacillota
Weissella confusa EJ61 [PVSF]
152499
152572
+
Gln
CTG
[ENA]
¡û
>W1911635289
PVSG01000002
Bacillota
Weissella confusa EJ52 [PVSG]
263830
263903
+
Gln
CTG
[ENA]
¡û
>W1911635372
PVSH01000004
Bacillota
Weissella confusa EJ12 [PVSH]
145517
145590
+
Gln
CTG
[ENA]
¡û
>W1911635450
PVSI01000006
Bacillota
Weissella confusa VTT E-163496 [PVSI]
36188
36261
+
Gln
CTG
[ENA]
¡û
>W1911635524
PVSJ01000001
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
401166
401239
+
Gln
CTG
[ENA]
¡û
>W1911635608
PVSK01000005
Bacillota
Weissella confusa VTT E-153457 [PVSK]
34571
34644
+
Gln
CTG
[ENA]
¡û
>W1911635680
PVSL01000001
Bacillota
Weissella confusa VTT E-143403 [PVSL]
401166
401239
+
Gln
CTG
[ENA]
¡û
>W1911635761
PVSM01000002
Bacillota
Weissella confusa VTT E-072748 [PVSM]
146048
146121
+
Gln
CTG
[ENA]
¡û
>W1911635842
PVSN01000013
Bacillota
Weissella confusa VTT E-062653 [PVSN]
18852
18925
+
Gln
CTG
[ENA]
¡û
>W1911635920
PVSO01000012
Bacillota
Weissella confusa VTT E-95616 [PVSO]
13093
13166
+
Gln
CTG
[ENA]
¡û
>W1911635997
PVSP01000002
Bacillota
Weissella confusa VTT E-90393 [PVSP]
146571
146644
+
Gln
CTG
[ENA]
¡û
>W1810576405
QENM01000007
Bacillota
Weissella confusa 32 [QENM]
22833
22760
-
Gln
CTG
[ENA]
¡û
>W1810816530
QSBT01000011
Bacillota
Weissella confusa AF03-13 [QSBT]
7340
7267
-
Gln
CTG
[ENA]
¡û
>W1810828827
QSKQ01000002
Bacillota
Weissella cibaria AM27-24 [QSKQ]
245237
245164
-
Gln
CTG
[ENA]
¡û
>W1810828881
QSKR01000002
Bacillota
Weissella cibaria AM27-22LB [QSKR]
172142
172215
+
Gln
CTG
[ENA]
¡û
>W1810842371
QSVX01000009
Bacillota
Weissella cibaria OF06-4 [QSVX]
80778
80851
+
Gln
CTG
[ENA]
¡û
>W1510500326
CRHY01000022
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
24400
24327
-
Gln
CTG
[ENA]
¡û
>W1511479005
JWHT01000030
Bacillota
Weissella cibaria AB3b [JWHT]
14336
14263
-
Gln
CTG
[ENA]
¡û
>W1511479050
JWHU01000005
Bacillota
Weissella cibaria MG1 [JWHU]
40683
40610
-
Gln
CTG
[ENA]
¡û
>W1511479127
JWHV01000014
Bacillota
Weissella cibaria ff3PR [JWHV]
23899
23972
+
Gln
CTG
[ENA]
¡û
>W11139987
AEKT01000023
Bacillota
Weissella cibaria KACC 11862 [AEKT]
70853
70926
+
Gln
CTG
[ENA]
¡û
>C161046755
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
885174
885247
+
Gln
CTG
[Ensembl]
¡û
>W1610528138
JQAY01000008
Bacillota
Weissella confusa [JQAY]
146681
146754
+
Gln
CTG
[ENA]
¡û
>W1610857556
LQQL01000208
Bacillota
Weissella sp. DD23 [LQQL]
1260
1333
+
Gln
CTG
[ENA]
¡û
>W1610978320
LVYB01000008
Bacillota
Weissella cibaria [LVYB]
51728
51655
-
Gln
CTG
[ENA]
¡û
>W1710629728
JQAY01000008
Bacillota
Weissella confusa [JQAY]
146681
146754
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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