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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403924 (93 seq.)
>W1710872209
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2140966
2141039
+
Arg
CCG
[ENA]
¡û
>W1711010067
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
31999
31925
-
Arg
CCG
[ENA]
¡û
>W1711252439
LYPA01000024
Bacillota
Paenibacillus oryzae [LYPA]
29790
29716
-
Arg
CCG
[ENA]
¡û
>W1711302070
MAIS01000037
Bacillota
Paenibacillus sp. KS1 [MAIS]
43885
43811
-
Arg
CCG
[ENA]
¡û
>W1711710765
MSZX01000007
Bacillota
Paenibacillus selenitireducens [MSZX]
314992
315066
+
Arg
CCG
[ENA]
¡û
>W1711827015
MXQD01000055
Bacillota
Paenibacillus sp. MY03 [MXQD]
63126
63052
-
Arg
CCG
[ENA]
¡û
>W1711979172
NDGJ01000035
Bacillota
Paenibacillus apiarius [NDGJ]
88942
88868
-
Arg
CCG
[ENA]
¡û
>W1711979202
NDGK01000004
Bacillota
Paenibacillus thiaminolyticus [NDGK]
15099
15173
+
Arg
CCG
[ENA]
¡û
>W131171970
ARGP01000028
Bacillota
Paenibacillus terrigena DSM 21567 [ARGP]
33893
33819
-
Arg
CCG
[ENA]
¡û
>W131235790
AULV01000018
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
25215
25141
-
Arg
CCG
[ENA]
¡û
>W131235821
AULW01000017
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
28050
27976
-
Arg
CCG
[ENA]
¡û
>W131174384
ARIL01000014
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
28909
28835
-
Arg
CCG
[ENA]
¡û
>W131227953
AUFO01000014
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
35179
35253
+
Arg
CCG
[ENA]
¡û
>W131234978
AULE01000029
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
49806
49732
-
Arg
CCG
[ENA]
¡û
>W131235718
AULU01000012
Bacillota
Paenibacillus assamensis DSM 18201 [AULU]
49949
49875
-
Arg
CCG
[ENA]
¡û
>W131239113
BALG01000024
Bacillota
Paenibacillus popilliae ATCC 14706 [BALG]
27843
27769
-
Arg
CCG
[ENA]
¡û
>W141073487
ASSE01000257
Bacillota
Paenibacillus massiliensis T7 [ASSE]
22945
23019
+
Arg
CCG
[ENA]
¡û
>W141080202
ATMS01000012
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
114286
114360
+
Arg
CCG
[ENA]
¡û
>W141080281
ATMT01000010
Bacillota
Paenibacillus alvei TS-15 [ATMT]
22269
22343
+
Arg
CCG
[ENA]
¡û
>W08007970
ABKS01000035
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
27001
26930
-
Arg
CCG
[ENA]
¡û
>WENV181801342
OGSB01000096
[OGSB] human gut metagenome; fecal sample 5 from infant 3
45025
44951
-
Arg
CCG
[ENA]
¢þ
>WENV181810476
OGSV01000088
[OGSV] human gut metagenome; fecal sample 4 from infant 3
44892
44818
-
Arg
CCG
[ENA]
¢þ
>WENV181822843
OGUH01000089
[OGUH] human gut metagenome; fecal sample 3 from infant 3
44892
44818
-
Arg
CCG
[ENA]
¢þ
>W141251988
CBRA020000045
Bacillota
Paenibacillus sp. P22 [CBRA]
41393
41319
-
Arg
CCG
[ENA]
¡û
>W141255904
CBVJ010000120
Bacillota
Paenibacillus gorillae G1 [CBVJ]
15362
15436
+
Arg
CCG
[ENA]
¡û
>WENV183734908
PJUA01000134
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
42076
42150
+
Arg
CCG
[ENA]
¢þ
>WENV170705883
LNAP01000568
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10873
10947
+
Arg
CCG
[ENA]
¢þ
>W141462435
JFHT01000128
Bacillota
Paenibacillus darwinianus [JFHT]
24275
24201
-
Arg
CCG
[ENA]
¡û
>W141462458
JFHU01000141
Bacillota
Paenibacillus darwinianus [JFHU]
24343
24269
-
Arg
CCG
[ENA]
¡û
>W141462476
JFHV01000151
Bacillota
Paenibacillus darwinianus [JFHV]
11953
12027
+
Arg
CCG
[ENA]
¡û
>W141462561
JFHX01000007
Bacillota
Paenibacillus ehimensis A2 [JFHX]
198033
198107
+
Arg
CCG
[ENA]
¡û
>C181021390
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
1799993
1800066
+
Arg
CCG
-
¡û
>C191143864
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3010467
3010541
+
Arg
CCG
-
¡û
>W141702841
JMLT01000006
Bacillota
Paenibacillus sp. UNC217MF [JMLT]
45112
45038
-
Arg
CCG
[ENA]
¡û
>W141754359
JNVM01000046
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
35555
35629
+
Arg
CCG
[ENA]
¡û
>W1910007058
BBYF01000009
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
185738
185812
+
Arg
CCG
[ENA]
¡û
>W1910018470
BDQX01000192
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
16572
16646
+
Arg
CCG
[ENA]
¡û
>W1910154638
BILX01000056
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
31137
31063
-
Arg
CCG
[ENA]
¡û
>W1910154691
BILY01000053
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
10617
10691
+
Arg
CCG
[ENA]
¡û
>W1910154727
BILZ01000045
Bacillota
Paenibacillus kobensis NBRC 15729 [BILZ]
13902
13976
+
Arg
CCG
[ENA]
¡û
>W1910154826
BIMB01000061
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
12099
12173
+
Arg
CCG
[ENA]
¡û
>W1910154931
BIMD01000064
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
12694
12620
-
Arg
CCG
[ENA]
¡û
>W1910155146
BIMI01000014
Bacillota
Paenibacillus thiaminolyticus NBRC 15656 [BIMI]
15029
15103
+
Arg
CCG
[ENA]
¡û
>W1910155294
BIML01000034
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
27297
27223
-
Arg
CCG
[ENA]
¡û
>W1910155330
BIMM01000051
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
11899
11973
+
Arg
CCG
[ENA]
¡û
>C09108248
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
190714
190640
-
Arg
CCG
[Ensembl]
¡û
>W1910175775
BJCS01000022
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
30566
30493
-
Arg
CCG
[ENA]
¡û
>W1910505734
FYEP01000035
Bacillota
Paenibacillus tyrfis B69 [FYEP]
36477
36551
+
Arg
CCG
[ENA]
¡û
>W1910505935
FYER01000015
Bacillota
Paenibacillus aquistagni St-s [FYER]
56981
56907
-
Arg
CCG
[ENA]
¡û
>W1910831980
MYFO01000017
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
38279
38206
-
Arg
CCG
[ENA]
¡û
>W1910891878
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
262444
262370
-
Arg
CCG
[ENA]
¡û
>W1910913933
NHRJ02000018
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
27655
27581
-
Arg
CCG
[ENA]
¡û
>W1911069575
NMOK01000005
Bacillota
Paenibacillus sp. ATY16 [NMOK]
14748
14822
+
Arg
CCG
[ENA]
¡û
>W1911075519
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1189719
1189645
-
Arg
CCG
[ENA]
¡û
>W1911779650
QXQA01000001
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
869
795
-
Arg
CCG
[ENA]
¡û
>W1911779740
QXQB01000002
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
1325423
1325497
+
Arg
CCG
[ENA]
¡û
>W1911809768
QYZD01000001
Bacillota
Paenibacillus thiaminolyticus BO5 [QYZD]
44715
44641
-
Arg
CCG
[ENA]
¡û
>W1911810936
QZCF01000015
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
29131
29205
+
Arg
CCG
[ENA]
¡û
>W1810402761
PYHP01000010
Bacillota
Paenibacillus elgii AC13 [PYHP]
13477
13551
+
Arg
CCG
[ENA]
¡û
>W1810608876
QGTQ01000007
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
26932
26858
-
Arg
CCG
[ENA]
¡û
>W1810679747
QKRB01000044
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
26624
26550
-
Arg
CCG
[ENA]
¡û
>W1810683191
QKVW01000006
Bacillota
Paenibacillus dendritiformis PV3-16 [QKVW]
525
451
-
Arg
CCG
[ENA]
¡û
>W1810759044
QPJD01000007
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
349471
349545
+
Arg
CCG
[ENA]
¡û
>W1810870244
QUBQ01000003
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
37630
37556
-
Arg
CCG
[ENA]
¡û
>W10126325
AEDD01000010
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
131446
131520
+
Arg
CCG
[ENA]
¡û
>W1511185297
JMDX01000028
Bacillota
Paenibacillus sp. E194 [JMDX]
20267
20341
+
Arg
CCG
[ENA]
¡û
>W11133586
AEDD01000010
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
131446
131520
+
Arg
CCG
[ENA]
¡û
>W1511541263
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
4018698
4018624
-
Arg
CCG
[ENA]
¡û
>W1511577207
LAQO01000042
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
44697
44770
+
Arg
CCG
[ENA]
¡û
>W11163539
AFHW01000136
Bacillota
Paenibacillus elgii B69 [AFHW]
31311
31237
-
Arg
CCG
[ENA]
¡û
>W11178723
AGFE01000028
Bacillota
Thermobacillus composti KWC4 [AGFE]
28638
28712
+
Arg
CCG
[ENA]
¡û
>C161058223
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4055739
4055812
+
Arg
CCG
[Ensembl]
¡û
>W1610048439
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
30431
30358
-
Arg
CCG
[ENA]
¡û
>W121034236
AHKH01000099
Bacillota
Paenibacillus dendritiformis C454 [AHKH]
638
564
-
Arg
CCG
[ENA]
¡û
>W121112102
ALKF01000185
Bacillota
Paenibacillus sp. OSY-SE [ALKF]
95246
95172
-
Arg
CCG
[ENA]
¡û
>W121122902
AMBZ01000002
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
860258
860184
-
Arg
CCG
[ENA]
¡û
>C131002457
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
3719356
3719430
+
Arg
CCG
[Ensembl]
¡û
>W1610543204
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
31915
31841
-
Arg
CCG
[ENA]
¡û
>W1610734555
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2140966
2141039
+
Arg
CCG
[ENA]
¡û
>W1610858587
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
31999
31925
-
Arg
CCG
[ENA]
¡û
>W1611017227
LYPA01000024
Bacillota
Paenibacillus oryzae [LYPA]
29790
29716
-
Arg
CCG
[ENA]
¡û
>W1611052858
MAIS01000037
Bacillota
Paenibacillus sp. KS1 [MAIS]
43885
43811
-
Arg
CCG
[ENA]
¡û
>W1710044949
BBEC01000043
Bacillota
Paenibacillus sp. YK5 [BBEC]
30431
30358
-
Arg
CCG
[ENA]
¡û
>W1710505525
FMTT01000029
Bacillota
Paenibacillus tianmuensis [FMTT]
36132
36206
+
Arg
CCG
[ENA]
¡û
>W1710514514
FNAZ01000004
Bacillota
Paenibacillus sp. cl6col [FNAZ]
44454
44380
-
Arg
CCG
[ENA]
¡û
>W1710518365
FNDY01000033
Bacillota
Paenibacillus naphthalenovorans [FNDY]
30501
30428
-
Arg
CCG
[ENA]
¡û
>W1710535944
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
3862149
3862076
-
Arg
CCG
[ENA]
¡û
>W1710559622
FOMT01000011
Bacillota
Paenibacillus catalpae [FOMT]
26389
26315
-
Arg
CCG
[ENA]
¡û
>W1710560637
FONN01000028
Bacillota
Paenibacillus algorifonticola [FONN]
44985
45058
+
Arg
CCG
[ENA]
¡û
>W1710595448
FTLY01000005
Bacillota
Paenibacillus sp. RU4X [FTLY]
308553
308627
+
Arg
CCG
[ENA]
¡û
>W1710597346
FTND01000005
Bacillota
Paenibacillus sp. RU4T [FTND]
308553
308627
+
Arg
CCG
[ENA]
¡û
>W1710608585
FXAZ01000004
Bacillota
Paenibacillus aquistagni 11 [FXAZ]
58096
58022
-
Arg
CCG
[ENA]
¡û
>W1710646335
JTHN01000117
Bacillota
Paenibacillus sp. A3 [JTHN]
31915
31841
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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