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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403952 (145 seq.)
>W1710926038
LODR01000012
Bacillota
Megasphaera sp. DJF_B143 [LODR]
151230
151304
+
Gln
CTG
[ENA]
¡û
>W131109520
APHX01000027
Bacillota
Megasphaera sp. BL7 [APHX]
6318
6392
+
Gln
CTG
[ENA]
¡û
>W131109531
APHX01000058
Bacillota
Megasphaera sp. BL7 [APHX]
311
237
-
Gln
CTG
[ENA]
¡û
>W131109544
APHX01000077
Bacillota
Megasphaera sp. BL7 [APHX]
4256
4182
-
Gln
CTG
[ENA]
¡û
>W131109612
APHY01000098
Bacillota
Megasphaera sp. NM10 [APHY]
288
214
-
Gln
CTG
[ENA]
¡û
>W131251615
CAVO010000132
Bacillota
Megasphaera massiliensis NP3 [CAVO]
163
237
+
Gln
CTG
[ENA]
¡û
>WENV180118276
OARX01018460
[OARX] human gut metagenome; ENVO:feces
393
319
-
Gln
CTG
[ENA]
¢þ
>WENV180184754
OAWS01001732
[OAWS] human gut metagenome; faeces
6867
6941
+
Gln
CTG
[ENA]
¢þ
>WENV180236031
OBCU01047796
[OBCU] human gut metagenome; human gut
163
237
+
Gln
CTG
[ENA]
¢þ
>WENV180289647
OBIU01000044
[OBIU] human gut metagenome; human gut
34051
34125
+
Gln
CTG
[ENA]
¢þ
>WENV180289754
OBIU01000112
[OBIU] human gut metagenome; human gut
49046
48972
-
Gln
CTG
[ENA]
¢þ
>WENV180305958
OBJO01018702
[OBJO] human gut metagenome; human gut
81
155
+
Gln
CTG
[ENA]
¢þ
>WENV180338398
OBLI01000291
[OBLI] pig gut metagenome; faeces
25809
25883
+
Gln
CTG
[ENA]
¢þ
>WENV180405368
OBTM01002979
[OBTM] human gut metagenome; ENVO:feces
1586
1660
+
Gln
CTG
[ENA]
¢þ
>WENV180577512
OCMA01059772
[OCMA] human gut metagenome; human gut
200
274
+
Gln
CTG
[ENA]
¢þ
>WENV180578857
OCMC01003470
[OCMC] human gut metagenome; human gut
1823
1749
-
Gln
CTG
[ENA]
¢þ
>WENV180578905
OCMC01005783
[OCMC] human gut metagenome; human gut
806
880
+
Gln
CTG
[ENA]
¢þ
>WENV180597246
OCPK01017254
[OCPK] human gut metagenome; ENVO:feces
323
249
-
Gln
CTG
[ENA]
¢þ
>WENV180669351
OCVV011279304
[OCVV] gut metagenome; gut
21374
21448
+
Gln
CTG
[ENA]
¢þ
>WENV180669357
OCVV011279304
[OCVV] gut metagenome; gut
21374
21448
+
Gln
CTG
[ENA]
¢þ
>WENV180826222
ODJZ01001036
[ODJZ] human metagenome; G_DNA_Stool
20780
20706
-
Gln
CTG
[ENA]
¢þ
>WENV180995897
ODVR01031114
[ODVR] human metagenome; G_DNA_Stool
38
112
+
Gln
CTG
[ENA]
¢þ
>WENV181340340
OFMH01000010
[OFMH] human gut metagenome; human gut
53308
53234
-
Gln
CTG
[ENA]
¢þ
>WENV181396208
OFSC01000562
[OFSC] human gut metagenome; human gut
1509
1583
+
Gln
CTG
[ENA]
¢þ
>WENV181434769
OGDF01001454
[OGDF] human gut metagenome; human gut
15928
15854
-
Gln
CTG
[ENA]
¢þ
>WENV181435277
OGDF01003024
[OGDF] human gut metagenome; human gut
5983
6057
+
Gln
CTG
[ENA]
¢þ
>WENV181463733
OGEO01028915
[OGEO] metagenome; Human gut stool
699
625
-
Gln
CTG
[ENA]
¢þ
>WENV181464522
OGEP01001227
[OGEP] metagenome; Human gut stool
8275
8349
+
Gln
CTG
[ENA]
¢þ
>WENV181476079
OGFE01006045
[OGFE] metagenome; Human gut stool
3184
3258
+
Gln
CTG
[ENA]
¢þ
>WENV181488955
OGFR01002491
[OGFR] metagenome; Human gut stool
2752
2678
-
Gln
CTG
[ENA]
¢þ
>WENV181506470
OGGM01003702
[OGGM] metagenome; Human gut stool
246
172
-
Gln
CTG
[ENA]
¢þ
>WENV181511452
OGGS01001936
[OGGS] metagenome; Human gut stool
3478
3552
+
Gln
CTG
[ENA]
¢þ
>WENV181577106
OGJX01000119
[OGJX] metagenome; Human gut stool
83213
83139
-
Gln
CTG
[ENA]
¢þ
>WENV181617058
OGLZ01018577
[OGLZ] metagenome; Human gut stool
491
417
-
Gln
CTG
[ENA]
¢þ
>WENV181638897
OGNC01028791
[OGNC] metagenome; Human gut stool
860
934
+
Gln
CTG
[ENA]
¢þ
>WENV181645209
OGNM01045983
[OGNM] metagenome; Human gut stool
135
209
+
Gln
CTG
[ENA]
¢þ
>WENV181675860
OGOP01014970
[OGOP] human gut metagenome; faeces
1891
1817
-
Gln
CTG
[ENA]
¢þ
>WENV181775140
OGRF01000954
[OGRF] human gut metagenome; faeces
14853
14927
+
Gln
CTG
[ENA]
¢þ
>WENV181788378
OGRO01001114
[OGRO] human gut metagenome; faeces
6718
6644
-
Gln
CTG
[ENA]
¢þ
>WENV181868404
OGWX01000157
[OGWX] human gut metagenome; faeces
27843
27917
+
Gln
CTG
[ENA]
¢þ
>WENV181871173
OGWZ01000013
[OGWZ] human gut metagenome; faeces
170749
170823
+
Gln
CTG
[ENA]
¢þ
>WENV181871202
OGWZ01000017
[OGWZ] human gut metagenome; faeces
24347
24421
+
Gln
CTG
[ENA]
¢þ
>WENV181876458
OGXC01011433
[OGXC] human gut metagenome; faeces
1534
1460
-
Gln
CTG
[ENA]
¢þ
>WENV181885142
OGXJ01007009
[OGXJ] human gut metagenome; faeces
3578
3504
-
Gln
CTG
[ENA]
¢þ
>WENV181905594
OGXY01000721
[OGXY] human gut metagenome; faeces
17950
17876
-
Gln
CTG
[ENA]
¢þ
>WENV181911088
OGYD01000303
[OGYD] human gut metagenome; faeces
31914
31988
+
Gln
CTG
[ENA]
¢þ
>WENV181913004
OGYE01002246
[OGYE] human gut metagenome; faeces
10498
10424
-
Gln
CTG
[ENA]
¢þ
>WENV181944871
OGZB01000270
[OGZB] human gut metagenome; faeces
10008
10082
+
Gln
CTG
[ENA]
¢þ
>WENV181949339
OGZF01001057
[OGZF] human gut metagenome; faeces
18276
18202
-
Gln
CTG
[ENA]
¢þ
>WENV181961866
OGZO01032236
[OGZO] human gut metagenome; faeces
1670
1744
+
Gln
CTG
[ENA]
¢þ
>WENV181970093
OGZX01001904
[OGZX] human gut metagenome; faeces
10008
10082
+
Gln
CTG
[ENA]
¢þ
>WENV181972029
OGZZ01008077
[OGZZ] human gut metagenome; faeces
2486
2412
-
Gln
CTG
[ENA]
¢þ
>WENV181976087
OHAD01000240
[OHAD] human gut metagenome; faeces
10011
10085
+
Gln
CTG
[ENA]
¢þ
>WENV182135666
OHKJ01001264
[OHKJ] human gut metagenome; feces
5703
5777
+
Gln
CTG
[ENA]
¢þ
>WENV182157100
OHLW01001594
[OHLW] human gut metagenome; feces
3030
3104
+
Gln
CTG
[ENA]
¢þ
>WENV182188479
OHOM01019422
[OHOM] human gut metagenome; feces
301
375
+
Gln
CTG
[ENA]
¢þ
>WENV182194966
OHPC01065672
[OHPC] human gut metagenome; feces
90
164
+
Gln
CTG
[ENA]
¢þ
>WENV182207975
OHPX01000145
[OHPX] human gut metagenome; feces
24111
24185
+
Gln
CTG
[ENA]
¢þ
>WENV182248834
OHSP01001100
[OHSP] human gut metagenome; feces
9627
9553
-
Gln
CTG
[ENA]
¢þ
>WENV182273449
OHUJ01000512
[OHUJ] human gut metagenome; feces
7441
7515
+
Gln
CTG
[ENA]
¢þ
>WENV182281371
OHVB01001623
[OHVB] human gut metagenome; feces
1938
1864
-
Gln
CTG
[ENA]
¢þ
>WENV182282255
OHVH01005361
[OHVH] human gut metagenome; feces
455
381
-
Gln
CTG
[ENA]
¢þ
>WENV182292606
OHWB01001068
[OHWB] human gut metagenome; feces
2892
2966
+
Gln
CTG
[ENA]
¢þ
>WENV182296243
OHWG01001308
[OHWG] human gut metagenome; feces
3594
3668
+
Gln
CTG
[ENA]
¢þ
>WENV182317652
OHYE01034742
[OHYE] human gut metagenome; feces
288
214
-
Gln
CTG
[ENA]
¢þ
>WENV182334239
OHZM01003131
[OHZM] human gut metagenome; feces
2923
2997
+
Gln
CTG
[ENA]
¢þ
>WENV182348550
OIAZ01007346
[OIAZ] human gut metagenome; feces
921
847
-
Gln
CTG
[ENA]
¢þ
>WENV182350560
OIBF01007126
[OIBF] human gut metagenome; feces
1758
1832
+
Gln
CTG
[ENA]
¢þ
>WENV182360358
OICB01001653
[OICB] human gut metagenome; feces
4968
5042
+
Gln
CTG
[ENA]
¢þ
>WENV182364368
OICH01002281
[OICH] human gut metagenome; feces
955
881
-
Gln
CTG
[ENA]
¢þ
>WENV182370661
OICT01002092
[OICT] human gut metagenome; feces
5007
5081
+
Gln
CTG
[ENA]
¢þ
>WENV182371633
OICU01019693
[OICU] human gut metagenome; feces
343
417
+
Gln
CTG
[ENA]
¢þ
>WENV182510438
OIWK01002086
[OIWK] human gut metagenome; faeces
16486
16560
+
Gln
CTG
[ENA]
¢þ
>WENV182517079
OIWO01001242
[OIWO] human gut metagenome; faeces
20535
20461
-
Gln
CTG
[ENA]
¢þ
>WENV182524504
OIWT01000275
[OIWT] human gut metagenome; faeces
9982
10056
+
Gln
CTG
[ENA]
¢þ
>WENV182659625
OJML01025391
[OJML] human gut metagenome; feces
498
572
+
Gln
CTG
[ENA]
¢þ
>WENV182732816
OJQB01033662
[OJQB] human gut metagenome; stool sample
218
144
-
Gln
CTG
[ENA]
¢þ
>WENV182757593
OJRH01011289
[OJRH] human gut metagenome; stool sample
334
260
-
Gln
CTG
[ENA]
¢þ
>WENV182783499
OJSG01000185
[OJSG] human gut metagenome; human gut
63855
63781
-
Gln
CTG
[ENA]
¢þ
>WENV182790452
OJSM01016210
[OJSM] human gut metagenome; human gut
757
831
+
Gln
CTG
[ENA]
¢þ
>WENV182791660
OJSN01012588
[OJSN] human gut metagenome; human gut
790
716
-
Gln
CTG
[ENA]
¢þ
>WENV182793067
OJSO01051502
[OJSO] human gut metagenome; human gut
384
458
+
Gln
CTG
[ENA]
¢þ
>WENV182868218
OKRS01002625
[OKRS] human gut metagenome; faeces
2009
2083
+
Gln
CTG
[ENA]
¢þ
>WENV182890258
OKSF01012911
[OKSF] human gut metagenome; faeces
1295
1221
-
Gln
CTG
[ENA]
¢þ
>WENV182917897
OKTV01009568
[OKTV] human gut metagenome; feces
530
604
+
Gln
CTG
[ENA]
¢þ
>WENV182921287
OKUB01005611
[OKUB] human gut metagenome; feces
159
233
+
Gln
CTG
[ENA]
¢þ
>WENV182924943
OKUI01003391
[OKUI] human gut metagenome; feces
154
80
-
Gln
CTG
[ENA]
¢þ
>WENV182926448
OKUM01000152
[OKUM] human gut metagenome; feces
9983
10057
+
Gln
CTG
[ENA]
¢þ
>WENV182928448
OKUO01000714
[OKUO] human gut metagenome; feces
4429
4503
+
Gln
CTG
[ENA]
¢þ
>WENV182929508
OKUQ01001542
[OKUQ] human gut metagenome; feces
247
173
-
Gln
CTG
[ENA]
¢þ
>WENV182932358
OKUU01002728
[OKUU] human gut metagenome; feces
3454
3380
-
Gln
CTG
[ENA]
¢þ
>WENV182940895
OKVG01000117
[OKVG] human gut metagenome; human gut
56716
56642
-
Gln
CTG
[ENA]
¢þ
>WENV182941090
OKVG01000358
[OKVG] human gut metagenome; human gut
18994
18920
-
Gln
CTG
[ENA]
¢þ
>WENV182943426
OKVI01000069
[OKVI] human gut metagenome; human gut
95110
95036
-
Gln
CTG
[ENA]
¢þ
>WENV183026388
OLFU01001533
[OLFU] human gut metagenome; faeces
2303
2377
+
Gln
CTG
[ENA]
¢þ
>WENV183027777
OLFV01000397
[OLFV] human gut metagenome; faeces
9662
9588
-
Gln
CTG
[ENA]
¢þ
>WENV183029555
OLFW01000562
[OLFW] human gut metagenome; faeces
20481
20407
-
Gln
CTG
[ENA]
¢þ
>WENV183032296
OLFY01000053
[OLFY] human gut metagenome; faeces
159448
159374
-
Gln
CTG
[ENA]
¢þ
>WENV183053495
OLGL01021458
[OLGL] human gut metagenome; faeces
139
65
-
Gln
CTG
[ENA]
¢þ
>WENV183064383
OLIH01005106
[OLIH] metagenome; faeces
77
151
+
Gln
CTG
[ENA]
¢þ
>WENV183178363
OLPH01000047
[OLPH] human gut metagenome; faeces
129603
129529
-
Gln
CTG
[ENA]
¢þ
>WENV183206713
OLQA01002252
[OLQA] human gut metagenome; faeces
5636
5710
+
Gln
CTG
[ENA]
¢þ
>WENV183270326
OLRV01005910
[OLRV] human gut metagenome; faeces
132
58
-
Gln
CTG
[ENA]
¢þ
>WENV183332466
OLWD01000444
[OLWD] human gut metagenome; feces
6321
6247
-
Gln
CTG
[ENA]
¢þ
>WENV183339132
OLWK01014652
[OLWK] human gut metagenome; feces
1129
1203
+
Gln
CTG
[ENA]
¢þ
>WENV183340578
OLWL01018454
[OLWL] human gut metagenome; feces
1295
1221
-
Gln
CTG
[ENA]
¢þ
>WENV183349367
OLWW01000193
[OLWW] human gut metagenome; feces
9938
9864
-
Gln
CTG
[ENA]
¢þ
>WENV183465880
OMEB01003443
[OMEB] human gut metagenome; feces
286
360
+
Gln
CTG
[ENA]
¢þ
>WENV183469205
OMEI01000728
[OMEI] human gut metagenome; feces
5702
5628
-
Gln
CTG
[ENA]
¢þ
>WENV183485609
OMFQ01000351
[OMFQ] human gut metagenome; feces
18949
18875
-
Gln
CTG
[ENA]
¢þ
>WENV183580521
OOCN01000069
[OOCN] human gut metagenome; human gut
94698
94624
-
Gln
CTG
[ENA]
¢þ
>WENV183599926
OODH01023417
[OODH] human gut metagenome; human gut
761
835
+
Gln
CTG
[ENA]
¢þ
>WENV183608775
OODQ01000157
[OODQ] human gut metagenome; human gut
52363
52437
+
Gln
CTG
[ENA]
¢þ
>WENV183608940
OODQ01000532
[OODQ] human gut metagenome; human gut
18529
18455
-
Gln
CTG
[ENA]
¢þ
>WENV183637677
OQVH01001062
[OQVH] human gut metagenome; human gut
9145
9071
-
Gln
CTG
[ENA]
¢þ
>WENV170074557
CDZT01000026
[CDZT] gut metagenome; human stools
422
496
+
Gln
CTG
[ENA]
¢þ
>WENV170075647
CDZT01041540
[CDZT] gut metagenome; human stools
27737
27811
+
Gln
CTG
[ENA]
¢þ
>WENV170076141
CDZT01057484
[CDZT] gut metagenome; human stools
39223
39297
+
Gln
CTG
[ENA]
¢þ
>WENV170077360
CDZU01029474
[CDZU] gut metagenome; human stools
21689
21615
-
Gln
CTG
[ENA]
¢þ
>WENV170077564
CDZU01034970
[CDZU] gut metagenome; human stools
40025
39951
-
Gln
CTG
[ENA]
¢þ
>WENV170776281
LXOW01149364
[LXOW] bovine gut metagenome; Cow rumen
5
79
+
Gln
CTG
[ENA]
¢þ
>C181011474
CP011940
Bacillota
Megasphaera hexanoica MH [CP011940]
567230
567304
+
Gln
CTG
-
¡û
>C181156430
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
1234704
1234778
+
Gln
CTG
-
¡û
>C181156462
CP027569
Bacillota
Megasphaera elsdenii NCIMB702410 [CP027569]
886210
886136
-
Gln
CTG
-
¡û
>C181156496
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
1050780
1050854
+
Gln
CTG
-
¡û
>C181156535
CP027570
Bacillota
Megasphaera elsdenii DSM 20460 ATCC 25940 [CP027570]
705319
705245
-
Gln
CTG
-
¡û
>W141559846
JHXC01000014
Bacillota
Megasphaera elsdenii T81 [JHXC]
26994
26920
-
Gln
CTG
[ENA]
¡û
>W141559862
JHXC01000020
Bacillota
Megasphaera elsdenii T81 [JHXC]
15754
15680
-
Gln
CTG
[ENA]
¡û
>W1910212246
FMIV01000002
Bacillota
Caecibacter massiliensis Marseille-P2974 [FMIV]
1319437
1319511
+
Gln
CTG
[ENA]
¡û
>W1911179387
NQMW01000003
Bacillota
Megasphaera elsdenii indica [NQMW]
39161
39235
+
Gln
CTG
[ENA]
¡û
>W1911179425
NQMW01000015
Bacillota
Megasphaera elsdenii indica [NQMW]
32904
32978
+
Gln
CTG
[ENA]
¡û
>W1810820870
QSFA01000029
Bacillota
Megasphaera sp. AM44-1BH [QSFA]
930
856
-
Gln
CTG
[ENA]
¡û
>W1511353882
JRPS01000010
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
39481
39407
-
Gln
CTG
[ENA]
¡û
>W1511353888
JRPS01000013
Bacillota
Megasphaera elsdenii 24-50 [JRPS]
47956
48030
+
Gln
CTG
[ENA]
¡û
>C161021129
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
832374
832448
+
Gln
CTG
-
¡û
>C161021169
CP009240
Bacillota
Megasphaera elsdenii 14-14 [CP009240]
509444
509370
-
Gln
CTG
-
¡û
>C161104339
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
784950
785024
+
Gln
CTG
[Ensembl]
¡û
>C161104383
HE576794
Bacillota
Megasphaera elsdenii DSM 20460 [HE576794]
439898
439824
-
Gln
CTG
[Ensembl]
¡û
>W1610783643
LODR01000012
Bacillota
Megasphaera sp. DJF_B143 [LODR]
151230
151304
+
Gln
CTG
[ENA]
¡û
>WENV082295
BAAV01001993
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
2249
2175
-
Gln
CTG
[ENA]
>WENV083276
BAAX01010820
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
867
791
-
Gln
CTG
[ENA]
>W1710564584
FOQP01000006
Bacillota
Megasphaera elsdenii [FOQP]
213060
212986
-
Gln
CTG
[ENA]
¡û
>W1710564614
FOQP01000014
Bacillota
Megasphaera elsdenii [FOQP]
51750
51824
+
Gln
CTG
[ENA]
¡û
>W1710589737
FRAK01000002
Bacillota
Megasphaera elsdenii [FRAK]
220901
220827
-
Gln
CTG
[ENA]
¡û
>W1710589772
FRAK01000011
Bacillota
Megasphaera elsdenii [FRAK]
15642
15568
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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