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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403957 (80 seq.)
>W1711037998
LRKJ01000158
Gammaproteobacteria
Escherichia coli [LRKJ]
184435
184509
+
Gly
TCC
[ENA]
¡û
>W1711038099
LRKK01000135
Gammaproteobacteria
Escherichia coli [LRKK]
136822
136896
+
Gly
TCC
[ENA]
¡û
>W1711038247
LRKL01000160
Gammaproteobacteria
Escherichia coli [LRKL]
129424
129498
+
Gly
TCC
[ENA]
¡û
>W1711039006
LRKR01000144
Gammaproteobacteria
Escherichia coli [LRKR]
77301
77227
-
Gly
TCC
[ENA]
¡û
>W1711039059
LRKS01000067
Gammaproteobacteria
Escherichia coli [LRKS]
111662
111588
-
Gly
TCC
[ENA]
¡û
>W1711039501
LRKV01000143
Gammaproteobacteria
Escherichia coli [LRKV]
32114
32188
+
Gly
TCC
[ENA]
¡û
>W1711039615
LRKW01000151
Gammaproteobacteria
Escherichia coli [LRKW]
113631
113705
+
Gly
TCC
[ENA]
¡û
>W1711039790
LRKY01000030
Gammaproteobacteria
Escherichia coli [LRKY]
9792
9718
-
Gly
TCC
[ENA]
¡û
>W1711040081
LRLA01000125
Gammaproteobacteria
Escherichia coli [LRLA]
9378
9452
+
Gly
TCC
[ENA]
¡û
>W1711040200
LRLB01000118
Gammaproteobacteria
Escherichia coli [LRLB]
137214
137288
+
Gly
TCC
[ENA]
¡û
>W1711040424
LRLD01000110
Gammaproteobacteria
Escherichia coli [LRLD]
95069
94995
-
Gly
TCC
[ENA]
¡û
>W1711040544
LRLE01000073
Gammaproteobacteria
Escherichia coli [LRLE]
266344
266418
+
Gly
TCC
[ENA]
¡û
>W1711043322
LRMC01000133
Gammaproteobacteria
Escherichia coli [LRMC]
33215
33141
-
Gly
TCC
[ENA]
¡û
>W1711043429
LRMD01000093
Gammaproteobacteria
Escherichia coli [LRMD]
120308
120382
+
Gly
TCC
[ENA]
¡û
>W131131416
APZL01000097
Gammaproteobacteria
Escherichia coli 2854350 [APZL]
142665
142739
+
Gly
TCC
[ENA]
¡û
>W131136841
AQBV01000158
Gammaproteobacteria
Escherichia coli p0305293.12 [AQBV]
12939
13013
+
Gly
TCC
[ENA]
¡û
>W131136927
AQBW01000100
Gammaproteobacteria
Escherichia coli p0305293.15 [AQBW]
12884
12958
+
Gly
TCC
[ENA]
¡û
>W131137092
AQBY01000153
Gammaproteobacteria
Escherichia coli p0305293.3 [AQBY]
3682
3608
-
Gly
TCC
[ENA]
¡û
>W131137203
AQCA01000149
Gammaproteobacteria
Escherichia coli p0305293.5 [AQCA]
5629
5703
+
Gly
TCC
[ENA]
¡û
>W131137384
AQCC01000116
Gammaproteobacteria
Escherichia coli p0305293.7 [AQCC]
1285
1359
+
Gly
TCC
[ENA]
¡û
>W131138008
AQCO01000030
Gammaproteobacteria
Escherichia coli MP021017.9 [AQCO]
1097
1171
+
Gly
TCC
[ENA]
¡û
>W131138094
AQCP01000025
Gammaproteobacteria
Escherichia coli MP021017.6 [AQCP]
1126
1200
+
Gly
TCC
[ENA]
¡û
>W131138702
AQCW01000172
Gammaproteobacteria
Escherichia coli MP021017.10 [AQCW]
1211
1285
+
Gly
TCC
[ENA]
¡û
>W131139804
AQDK01000077
Gammaproteobacteria
Escherichia coli 2861200 [AQDK]
1205
1279
+
Gly
TCC
[ENA]
¡û
>W131140292
AQDQ01000029
Gammaproteobacteria
Escherichia coli 2848050 [AQDQ]
6961
7035
+
Gly
TCC
[ENA]
¡û
>W131141046
AQDZ01000019
Gammaproteobacteria
Escherichia coli 2749250 [AQDZ]
1749
1823
+
Gly
TCC
[ENA]
¡û
>W131090991
AOGM01000030
Gammaproteobacteria
Escherichia coli O08 [AOGM]
113219
113293
+
Gly
TCC
[ENA]
¡û
>W131127263
APXN01000046
Gammaproteobacteria
Escherichia coli BCE030_MS-09 [APXN]
1254
1328
+
Gly
TCC
[ENA]
¡û
>W131132327
APZU01000028
Gammaproteobacteria
Escherichia coli P0301867.2 [APZU]
17887
17961
+
Gly
TCC
[ENA]
¡û
>W131077341
ANWD01000004
Gammaproteobacteria
Escherichia coli KTE101 [ANWD]
137623
137697
+
Gly
TCC
[ENA]
¡û
>W131127104
APXL01000259
Gammaproteobacteria
Escherichia coli BCE008_MS-01 [APXL]
1134
1208
+
Gly
TCC
[ENA]
¡û
>W131138169
AQCQ01000021
Gammaproteobacteria
Escherichia coli MP021017.5 [AQCQ]
1111
1185
+
Gly
TCC
[ENA]
¡û
>W131138249
AQCR01000073
Gammaproteobacteria
Escherichia coli MP021017.4 [AQCR]
1125
1199
+
Gly
TCC
[ENA]
¡û
>W131138335
AQCS01000061
Gammaproteobacteria
Escherichia coli MP021017.3 [AQCS]
1057
1131
+
Gly
TCC
[ENA]
¡û
>W131138418
AQCT01000075
Gammaproteobacteria
Escherichia coli MP021017.2 [AQCT]
1171
1245
+
Gly
TCC
[ENA]
¡û
>W131138495
AQCU01000072
Gammaproteobacteria
Escherichia coli MP021017.12 [AQCU]
196
270
+
Gly
TCC
[ENA]
¡û
>W131138572
AQCV01000022
Gammaproteobacteria
Escherichia coli MP021017.11 [AQCV]
1147
1221
+
Gly
TCC
[ENA]
¡û
>W131138989
AQDA01000060
Gammaproteobacteria
Escherichia coli BCE002_MS12 [AQDA]
186517
186591
+
Gly
TCC
[ENA]
¡û
>W131140382
AQDR01000071
Gammaproteobacteria
Escherichia coli 2845650 [AQDR]
2391
2465
+
Gly
TCC
[ENA]
¡û
>W131143140
AQEX01000014
Gammaproteobacteria
Escherichia coli MP021017.1 [AQEX]
1140485
1140559
+
Gly
TCC
[ENA]
¡û
>W131143773
AQFE01000022
Gammaproteobacteria
Escherichia coli 2726800 [AQFE]
359572
359646
+
Gly
TCC
[ENA]
¡û
>W131144132
AQFI01000014
Gammaproteobacteria
Escherichia coli BCE008_MS-13 [AQFI]
738901
738975
+
Gly
TCC
[ENA]
¡û
>W131144327
AQFK01000011
Gammaproteobacteria
Escherichia coli BCE001_MS16 [AQFK]
233717
233791
+
Gly
TCC
[ENA]
¡û
>WENV180226514
OBBR01000022
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
133677
133751
+
Gly
TCC
[ENA]
¢þ
>WENV180559273
OCKC01000021
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
220393
220467
+
Gly
TCC
[ENA]
¢þ
>W141077645
ATEX01000404
Gammaproteobacteria
Escherichia coli CE516 [ATEX]
931
857
-
Gly
TCC
[ENA]
¡û
>WENV182612369
OJJY01000569
[OJJY] metagenome; faeces
3324
3250
-
Gly
TCC
[ENA]
¢þ
>W141270530
CCPW01000051
Gammaproteobacteria
Escherichia coli [CCPW]
120894
120968
+
Gly
TCC
[ENA]
¡û
>W141383740
JDFV01000030
Gammaproteobacteria
Escherichia coli E1728 [JDFV]
505
431
-
Gly
TCC
[ENA]
¡û
>C181097633
CP024223
Gammaproteobacteria
Escherichia coli O169:H41 2014EL-1345-2 [CP024223]
4602991
4603065
+
Gly
TCC
-
¡û
>C181098073
CP024245
Gammaproteobacteria
Escherichia coli O27:H7 B4103-1 [CP024245]
3314597
3314523
-
Gly
TCC
-
¡û
>C181098463
CP024263
Gammaproteobacteria
Escherichia coli O169:H41 F6326-C1 [CP024263]
876851
876925
+
Gly
TCC
-
¡û
>C181098634
CP024269
Gammaproteobacteria
Escherichia coli F8111-1SC3 [CP024269]
135349
135423
+
Gly
TCC
-
¡û
>C181098740
CP024273
Gammaproteobacteria
Escherichia coli F9792 [CP024273]
1452600
1452674
+
Gly
TCC
-
¡û
>C191038287
CP025840
Gammaproteobacteria
Escherichia coli 214-4 [CP025840]
4516915
4516841
-
Gly
TCC
-
¡û
>W141530604
JHDO01000077
Gammaproteobacteria
Escherichia coli 1-110-08_S1_C3 [JHDO]
130384
130458
+
Gly
TCC
[ENA]
¡û
>W141530860
JHDQ01000034
Gammaproteobacteria
Escherichia coli 1-110-08_S1_C1 [JHDQ]
129926
130000
+
Gly
TCC
[ENA]
¡û
>W141541948
JHJJ01000013
Gammaproteobacteria
Escherichia coli O169:H41 str. F9792 [JHJJ]
87326
87252
-
Gly
TCC
[ENA]
¡û
>W141741684
JNPI01000086
Gammaproteobacteria
Escherichia coli 2-177-06_S3_C1 [JNPI]
140538
140612
+
Gly
TCC
[ENA]
¡û
>W141787418
JOSC01000155
Gammaproteobacteria
Escherichia coli 6-537-08_S1_C2 [JOSC]
16030
16104
+
Gly
TCC
[ENA]
¡û
>W1910017540
BDPU01000031
Gammaproteobacteria
Escherichia coli E956 [BDPU]
17053
17127
+
Gly
TCC
[ENA]
¡û
>W1910019134
BDRH01000033
Gammaproteobacteria
Escherichia coli E1650 [BDRH]
16281
16355
+
Gly
TCC
[ENA]
¡û
>W1910019924
BDRR01000031
Gammaproteobacteria
Escherichia coli E949 [BDRR]
37737
37663
-
Gly
TCC
[ENA]
¡û
>W1910970341
NJZP01000011
Gammaproteobacteria
Escherichia coli MOD1-EC1556 [NJZP]
91780
91854
+
Gly
TCC
[ENA]
¡û
>W1911086761
NNTK01000079
Gammaproteobacteria
Escherichia coli MOD1-EC6667 [NNTK]
4110
4184
+
Gly
TCC
[ENA]
¡û
>W1911086794
NNTL01000003
Gammaproteobacteria
Escherichia coli MOD1-EC6666 [NNTL]
164317
164391
+
Gly
TCC
[ENA]
¡û
>W1911087214
NNTQ01000076
Gammaproteobacteria
Escherichia coli MOD1-EC6660 [NNTQ]
3081
3007
-
Gly
TCC
[ENA]
¡û
>W1911087286
NNTR01000076
Gammaproteobacteria
Escherichia coli MOD1-EC6659 [NNTR]
3081
3007
-
Gly
TCC
[ENA]
¡û
>W1911088681
NNUK01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6634 [NNUK]
22167
22093
-
Gly
TCC
[ENA]
¡û
>W1810162614
PJFQ01000028
Gammaproteobacteria
Escherichia coli SC9 [PJFQ]
30142
30068
-
Gly
TCC
[ENA]
¡û
>W1511347067
JRIA01000002
Gammaproteobacteria
Escherichia coli VKPM B-10182 [JRIA]
122911
122837
-
Gly
TCC
[ENA]
¡û
>W1511400227
JTGK01000123
Gammaproteobacteria
Escherichia coli CE549 [JTGK]
16236
16310
+
Gly
TCC
[ENA]
¡û
>W1511400346
JTGM01000034
Gammaproteobacteria
Escherichia coli CE516 [JTGM]
1416
1342
-
Gly
TCC
[ENA]
¡û
>W1511429529
JUDN01000067
Gammaproteobacteria
Escherichia coli CVM N33561PS [JUDN]
22003
21929
-
Gly
TCC
[ENA]
¡û
>W11137957
AEHW01000010
Gammaproteobacteria
Escherichia coli TW10509 [AEHW]
107535
107461
-
Gly
TCC
[ENA]
¡û
>W1710738573
LGME01000211
Gammaproteobacteria
Escherichia coli [LGME]
2389
2463
+
Gly
TCC
[ENA]
¡û
>W1710738976
LGMI01000205
Gammaproteobacteria
Escherichia coli [LGMI]
19637
19563
-
Gly
TCC
[ENA]
¡û
>W1710739618
LGMO01000125
Gammaproteobacteria
Escherichia coli [LGMO]
140900
140974
+
Gly
TCC
[ENA]
¡û
>W1710740055
LGMS01000124
Gammaproteobacteria
Escherichia coli [LGMS]
1274
1200
-
Gly
TCC
[ENA]
¡û
>W1710741466
LGNE01000148
Gammaproteobacteria
Escherichia coli [LGNE]
138647
138721
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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