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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404049 (67 seq.)
>W131158401
AQUA01000005
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
114484
114412
-
Asn
GTT
[ENA]
¡û
>W131158429
AQUB01000009
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
779
851
+
Asn
GTT
[ENA]
¡û
>W131162925
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
209381
209453
+
Asn
GTT
[ENA]
¡û
>W131237909
AUSE01000055
Actinomycetota
actinobacterium SCGC AAA028-I14 [AUSE]
10613
10685
+
Asn
GTT
[ENA]
¡û
>WENV016656
AACY020467772
Marine microbial communities from Global Ocean Sampling (GOS)
2587
2513
-
Asn
GTT
[ENA]
>WENV180110696
OAPN01004328
[OAPN] marine metagenome; 2011
537
609
+
Asn
GTT
[ENA]
¢þ
>WENV180113985
OAPR01091381
[OAPR] marine metagenome; seawater
241
167
-
Asn
GTT
[ENA]
¢þ
>WENV180357380
OBNN01005973
[OBNN] marine metagenome; Coastal water
1020
948
-
Asn
GTT
[ENA]
¢þ
>WENV180364082
OBNZ01074759
[OBNZ] marine metagenome; ENVO:00002010
73
1
-
Asn
GTT
[ENA]
¢þ
>WENV180377408
OBON01020010
[OBON] marine metagenome; sea water
663
735
+
Asn
GTT
[ENA]
¢þ
>WENV181367711
OFQC01003253
[OFQC] freshwater metagenome; Freshwater Lake
589
515
-
Asn
GTT
[ENA]
¢þ
>WENV181368333
OFQL01000797
[OFQL] freshwater metagenome; Freshwater Lake
1860
1932
+
Asn
GTT
[ENA]
¢þ
>WENV181368411
OFQL01003435
[OFQL] freshwater metagenome; Freshwater Lake
986
1058
+
Asn
GTT
[ENA]
¢þ
>WENV181368801
OFQN01000673
[OFQN] freshwater metagenome; Freshwater Lake
1415
1343
-
Asn
GTT
[ENA]
¢þ
>WENV181368852
OFQN01001686
[OFQN] freshwater metagenome; Freshwater Lake
1048
1120
+
Asn
GTT
[ENA]
¢þ
>WENV181369025
OFQN01010897
[OFQN] freshwater metagenome; Freshwater Lake
577
651
+
Asn
GTT
[ENA]
¢þ
>WENV181369455
OFQP01002512
[OFQP] freshwater metagenome; Freshwater Lake
1155
1227
+
Asn
GTT
[ENA]
¢þ
>WENV181369925
OFQR01002518
[OFQR] freshwater metagenome; Freshwater Lake
328
256
-
Asn
GTT
[ENA]
¢þ
>WENV181370350
OFQS01004976
[OFQS] freshwater metagenome; Freshwater Lake
641
569
-
Asn
GTT
[ENA]
¢þ
>WENV181370364
OFQS01005876
[OFQS] freshwater metagenome; Freshwater Lake
1050
1122
+
Asn
GTT
[ENA]
¢þ
>WENV181370717
OFQT01005364
[OFQT] freshwater metagenome; Freshwater Lake
153
225
+
Asn
GTT
[ENA]
¢þ
>WENV181377040
OFRA01001570
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2996
3068
+
Asn
GTT
[ENA]
¢þ
>WENV181379279
OFRD01000240
[OFRD] wastewater metagenome; Exp Tend CN 100WW
6613
6685
+
Asn
GTT
[ENA]
¢þ
>WENV181385397
OFRI01080123
[OFRI] wastewater metagenome; Exp Tend VB 90WW
253
179
-
Asn
GTT
[ENA]
¢þ
>WENV181386322
OFRL01002325
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
554
482
-
Asn
GTT
[ENA]
¢þ
>WENV181395836
OFSB01008210
[OFSB] freshwater metagenome; Freshwater Lake
591
519
-
Asn
GTT
[ENA]
¢þ
>WENV181400036
OFSF01000981
[OFSF] wastewater metagenome; Exp Tend VB 100WW
4746
4818
+
Asn
GTT
[ENA]
¢þ
>WENV181400159
OFSF01001903
[OFSF] wastewater metagenome; Exp Tend VB 100WW
402
476
+
Asn
GTT
[ENA]
¢þ
>WENV181400875
OFSF01030861
[OFSF] wastewater metagenome; Exp Tend VB 100WW
898
970
+
Asn
GTT
[ENA]
¢þ
>WENV181836085
OGVJ01000568
[OGVJ] freshwater metagenome; freshwater
2066
1992
-
Asn
GTT
[ENA]
¢þ
>WENV181841133
OGVQ01004987
[OGVQ] freshwater metagenome; freshwater
325
251
-
Asn
GTT
[ENA]
¢þ
>WENV181853418
OGWI01004294
[OGWI] freshwater metagenome; freshwater
1211
1137
-
Asn
GTT
[ENA]
¢þ
>WENV181855641
OGWM01000210
[OGWM] freshwater metagenome; freshwater
1244
1170
-
Asn
GTT
[ENA]
¢þ
>WENV181855883
OGWM01004555
[OGWM] freshwater metagenome; freshwater
279
353
+
Asn
GTT
[ENA]
¢þ
>W141202924
AZHS01000004
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
16805
16877
+
Asn
GTT
[ENA]
¡û
>WENV001896
AACY020053709
Marine microbial communities from Global Ocean Sampling (GOS)
339
413
+
Asn
GTT
[ENA]
>WENV170571930
FLOH01000390
[FLOH] marine metagenome; water
37487
37561
+
Asn
GTT
[ENA]
¢þ
>WENV170571979
FLOH01000428
[FLOH] marine metagenome; water
88613
88541
-
Asn
GTT
[ENA]
¢þ
>WENV170599490
FUWD010076966
[FUWD] metagenome; unknown
399
325
-
Asn
GTT
[ENA]
¢þ
>WENV170604046
FUWD010356329
[FUWD] metagenome; unknown
643
569
-
Asn
GTT
[ENA]
¢þ
>WENV170609650
FUWD011458789
[FUWD] metagenome; unknown
91
19
-
Asn
GTT
[ENA]
¢þ
>WENV170625482
FUWD013198462
[FUWD] metagenome; unknown
266
192
-
Asn
GTT
[ENA]
¢þ
>WENV170626040
FUWD013212628
[FUWD] metagenome; unknown
1264
1192
-
Asn
GTT
[ENA]
¢þ
>WENV170633716
FUWD013400917
[FUWD] metagenome; unknown
266
192
-
Asn
GTT
[ENA]
¢þ
>C181018659
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
1213102
1213028
-
Asn
GTT
-
¡û
>C181018738
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1358716
1358644
-
Asn
GTT
-
¡û
>C181020875
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
357067
357141
+
Asn
GTT
-
¡û
>C181020949
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
376538
376612
+
Asn
GTT
-
¡û
>C181020986
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
345501
345575
+
Asn
GTT
-
¡û
>C181021022
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
303836
303910
+
Asn
GTT
-
¡û
>C181021058
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
307606
307680
+
Asn
GTT
-
¡û
>C181021099
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
392417
392489
+
Asn
GTT
-
¡û
>C181021132
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
347002
347076
+
Asn
GTT
-
¡û
>C181021170
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
316328
316402
+
Asn
GTT
-
¡û
>C181021282
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
308850
308924
+
Asn
GTT
-
¡û
>WENV027266
AACY021032201
Marine microbial communities from Global Ocean Sampling (GOS)
259
183
-
Asn
GTT
[ENA]
>WENV047245
AACY022650272
Marine microbial communities from Global Ocean Sampling (GOS)
224
298
+
Asn
GTT
[ENA]
>WENV057340
AACY023291798
Marine microbial communities from Global Ocean Sampling (GOS)
82
156
+
Asn
GTT
[ENA]
>WENV057372
AACY023292921
Marine microbial communities from Global Ocean Sampling (GOS)
1157
1083
-
Asn
GTT
[ENA]
>WENV057614
AACY023300135
Marine microbial communities from Global Ocean Sampling (GOS)
947
873
-
Asn
GTT
[ENA]
>WENV057702
AACY023303585
Marine microbial communities from Global Ocean Sampling (GOS)
1324
1250
-
Asn
GTT
[ENA]
>WENV057851
AACY023308692
Marine microbial communities from Global Ocean Sampling (GOS)
1164
1088
-
Asn
GTT
[ENA]
>WENV058832
AACY023343751
Marine microbial communities from Global Ocean Sampling (GOS)
1264
1188
-
Asn
GTT
[ENA]
>W1610625363
LIAM01000156
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
317
245
-
Asn
GTT
[ENA]
¡û
>W1610625369
LIAN01000036
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
131
59
-
Asn
GTT
[ENA]
¡û
>W1710756490
LIAM01000156
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
317
245
-
Asn
GTT
[ENA]
¡û
>W1710756496
LIAN01000036
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
131
59
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK