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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404054 (32 seq.)
>W1711188808
LWQT01000098
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
128241
128315
+
Val
CAC
[ENA]
¡û
>W131094260
AONQ01000047
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
10626
10552
-
Val
CAC
[ENA]
¡û
>W131166468
ARCM01000003
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
1193838
1193764
-
Val
CAC
[ENA]
¡û
>W131175675
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
2292063
2292137
+
Val
CAC
[ENA]
¡û
>C013744
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
3061495
3061569
+
Val
CAC
[Ensembl]
¡û
>w015417
AAPC01000010
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
45329
45403
+
Val
CAC
[ENA]
¡û
>w001824
AAAP01003025
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1984
1908
-
Val
CAC
[ENA]
¡û
>WENV181167889
OEIU01096469
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
472
546
+
Val
CAC
[ENA]
¢þ
>WENV181189785
OEOF01223421
[OEOF] activated sludge metagenome; Activated Sludge
11
85
+
Val
CAC
[ENA]
¢þ
>WENV181307839
OFIS01000003
[OFIS] sludge metagenome; sludge
529860
529934
+
Val
CAC
[ENA]
¢þ
>WENV181311362
OFJB01001129
[OFJB] sludge metagenome; sludge
6388
6462
+
Val
CAC
[ENA]
¢þ
>WENV181402076
OFTY01000088
[OFTY] sludge metagenome; sludge
47433
47507
+
Val
CAC
[ENA]
¢þ
>W141151379
AXBA01000015
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
169856
169782
-
Val
CAC
[ENA]
¡û
>C08011467
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
3566506
3566435
-
Val
CAC
[Ensembl]
¡û
>C08000306
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
2688478
2688552
+
Val
CAC
[Ensembl]
¡û
>W141278511
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
1943140
1943066
-
Val
CAC
[ENA]
¡û
>WENV170011670
APMI01080770
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1339
1265
-
Val
CAC
[ENA]
¢þ
>WENV170112144
CEGD01003502
[CEGD] microbial mat metagenome; grass silage
8289
8363
+
Val
CAC
[ENA]
¢þ
>WENV170551775
CXWJ01022638
[CXWJ] wastewater metagenome; activated sludge
1239
1313
+
Val
CAC
[ENA]
¢þ
>WENV170706560
LNAP01004210
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4548
4622
+
Val
CAC
[ENA]
¢þ
>W141730071
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
5304828
5304902
+
Val
CAC
[ENA]
¡û
>W141733730
JNLC01000002
Alphaproteobacteria
Bosea sp. 117 [JNLC]
134129
134203
+
Val
CAC
[ENA]
¡û
>W1910498969
FXXN01000023
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
196468
196542
+
Val
CAC
[ENA]
¡û
>W1810101800
PGTO01000005
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
26319
26245
-
Val
CAC
[ENA]
¡û
>W10110041
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
316663
316737
+
Val
CAC
[ENA]
¡û
>C10112221
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
931856
931782
-
Val
CAC
[Ensembl]
¡û
>W11112478
ADBQ01000001
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
316663
316737
+
Val
CAC
[ENA]
¡û
>W1511510903
JXSL01000028
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
204311
204385
+
Val
CAC
[ENA]
¡û
>C161108382
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
3720780
3720854
+
Val
CAC
-
¡û
>W121067968
AJTV01000004
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
19539
19613
+
Val
CAC
[ENA]
¡û
>W1610990927
LWQT01000098
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
128241
128315
+
Val
CAC
[ENA]
¡û
>W1710505312
FMTP01000004
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
408085
408011
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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