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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404059 (28 seq.)
>W131167765
ARDN01000006
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
350661
350735
+
Glu
TTC
[ENA]
¡û
>W131167766
ARDN01000006
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
350765
350839
+
Glu
TTC
[ENA]
¡û
>W131211917
ATNM01000107
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
54352
54280
-
Glu
TTC
[ENA]
¡û
>W131211918
ATNM01000107
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
54251
54177
-
Glu
TTC
[ENA]
¡û
>W131223150
AUBV01000015
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
99055
98983
-
Glu
TTC
[ENA]
¡û
>W131223151
AUBV01000015
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
98925
98851
-
Glu
TTC
[ENA]
¡û
>WENV180015245
FQKF010451970
[FQKF] soil metagenome; Soil
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV181370816
OFQT01013901
[OFQT] freshwater metagenome; Freshwater Lake
627
555
-
Glu
TTC
[ENA]
¢þ
>WENV183725732
PJQF01011159
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
128
204
+
Glu
TTC
[ENA]
¢þ
>WENV170550837
CXWF01035849
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
546
620
+
Glu
TTC
[ENA]
¢þ
>WENV022579
AACY020660085
Marine microbial communities from Global Ocean Sampling (GOS)
268
344
+
Glu
TTC
[ENA]
>W141699661
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
323928
323854
-
Glu
TTC
[ENA]
¡û
>W141699662
JMIH01000016
Bacteroidota
Anditalea andensis [JMIH]
323829
323755
-
Glu
TTC
[ENA]
¡û
>W1910548307
FZOK01000010
Bacteroidota
Belliella buryatensis 5C [FZOK]
170523
170595
+
Glu
TTC
[ENA]
¡û
>W1910548308
FZOK01000010
Bacteroidota
Belliella buryatensis 5C [FZOK]
170628
170700
+
Glu
TTC
[ENA]
¡û
>W1910939710
NJAG01000010
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
61861
61789
-
Glu
TTC
[ENA]
¡û
>W1910939711
NJAG01000010
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
60310
60236
-
Glu
TTC
[ENA]
¡û
>W1911775219
QXML01000004
Bacteroidota
Algoriphagus lacus N3 [QXML]
320716
320644
-
Glu
TTC
[ENA]
¡û
>W1911775220
QXML01000004
Bacteroidota
Algoriphagus lacus N3 [QXML]
320583
320511
-
Glu
TTC
[ENA]
¡û
>C151090023
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4832023
4831949
-
Glu
TTC
[Ensembl]
¡û
>C151090024
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
4831923
4831849
-
Glu
TTC
[Ensembl]
¡û
>C11105730
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
4785189
4785117
-
Glu
TTC
[Ensembl]
¡û
>C11105731
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
4785090
4785016
-
Glu
TTC
[Ensembl]
¡û
>C121010206
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
3003152
3003078
-
Glu
TTC
[Ensembl]
¡û
>C121010207
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
3003051
3002977
-
Glu
TTC
[Ensembl]
¡û
>C161046172
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
2375463
2375535
+
Glu
TTC
[Ensembl]
¡û
>C161046173
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
2375588
2375662
+
Glu
TTC
[Ensembl]
¡û
>W1710593062
FRCY01000003
Bacteroidota
Cyclobacterium lianum [FRCY]
189896
189970
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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