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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404578 (72 seq.)
>W1710872223
LMLV01000002
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
10703
10777
+
Gly
GCC
[ENA]
¡û
>W1710872250
LMLV01000013
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
63045
62971
-
Gly
GCC
[ENA]
¡û
>W1710872267
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1355
1429
+
Gly
GCC
[ENA]
¡û
>W1711075854
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
227472
227546
+
Gly
GCC
[ENA]
¡û
>W1711075862
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
356336
356410
+
Gly
GCC
[ENA]
¡û
>W1711418076
MHHN01000559
Bacillota
Paenibacillus sp. RIFOXYA1_FULL_44_5 [MHHN]
227
301
+
Gly
GCC
[ENA]
¡û
>W1711430641
MIJF01000004
Bacillota
Vulcanibacillus modesticaldus [MIJF]
956
1030
+
Gly
GCC
[ENA]
¡û
>W1711430683
MIJF01000059
Bacillota
Vulcanibacillus modesticaldus [MIJF]
3082
3008
-
Gly
GCC
[ENA]
¡û
>W1711503264
MKTL01000004
Bacillota
Clostridiales bacterium 38-18 [MKTL]
128130
128056
-
Gly
GCC
[ENA]
¡û
>W1711503271
MKTL01000004
Bacillota
Clostridiales bacterium 38-18 [MKTL]
127391
127317
-
Gly
GCC
[ENA]
¡û
>W131171170
ARGA01000047
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
13190
13116
-
Gly
GCC
[ENA]
¡û
>W131171176
ARGA01000058
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
50449
50375
-
Gly
GCC
[ENA]
¡û
>W131171180
ARGA01000058
Bacillota
Anaeromusa acidaminophila DSM 3853 [ARGA]
46079
46005
-
Gly
GCC
[ENA]
¡û
>WENV180033599
FTKL01000384
[FTKL] metagenome; soil
4358
4430
+
Gly
GCC
[ENA]
¢þ
>WENV180193474
OAZW01000703
[OAZW] human gut metagenome; faeces
23428
23354
-
Gly
GCC
[ENA]
¢þ
>WENV180402523
OBRP01003930
[OBRP] human gut metagenome; ENVO:feces
481
555
+
Gly
GCC
[ENA]
¢þ
>WENV180692382
OCZS010497733
[OCZS] soil metagenome; soil
139
65
-
Gly
GCC
[ENA]
¢þ
>WENV180966833
ODUS01000002
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
1276
1350
+
Gly
GCC
[ENA]
¢þ
>WENV180966859
ODUS01000003
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
182232
182306
+
Gly
GCC
[ENA]
¢þ
>WENV180966891
ODUS01000036
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
1711
1785
+
Gly
GCC
[ENA]
¢þ
>WENV180987694
ODVK01078908
[ODVK] human metagenome; G_DNA_Supragingival plaque
314
388
+
Gly
GCC
[ENA]
¢þ
>WENV180989613
ODVM01009191
[ODVM] human metagenome; G_DNA_Anterior nares
173
99
-
Gly
GCC
[ENA]
¢þ
>WENV181377481
OFRA01012614
[OFRA] wastewater metagenome; Lake Maggiore Verbania
963
1035
+
Gly
GCC
[ENA]
¢þ
>W141241018
CAGX01000030
Bacillota
Peptoniphilus grossensis ph5 [CAGX]
23539
23465
-
Gly
GCC
[ENA]
¡û
>WENV182629429
OJKS01002526
[OJKS] metagenome; surface
215
141
-
Gly
GCC
[ENA]
¢þ
>WENV182641064
OJLE01003877
[OJLE] metagenome; surface
801
875
+
Gly
GCC
[ENA]
¢þ
>WENV183090769
OLKE01002086
[OLKE] metagenome; surface
185
111
-
Gly
GCC
[ENA]
¢þ
>WENV183515655
OMKS01080240
[OMKS] sediment metagenome; hot spring sediment
284
210
-
Gly
GCC
[ENA]
¢þ
>WENV170674868
LCWY01012785
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
375
449
+
Gly
GCC
[ENA]
¢þ
>WENV170707818
LNAP01035046
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
165
91
-
Gly
GCC
[ENA]
¢þ
>C181021402
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
2798818
2798892
+
Gly
GCC
-
¡û
>C181021411
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3291788
3291862
+
Gly
GCC
-
¡û
>C181021427
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
3585474
3585548
+
Gly
GCC
-
¡û
>C191143879
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3754815
3754889
+
Gly
GCC
-
¡û
>C191143890
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3903008
3903082
+
Gly
GCC
-
¡û
>C191143897
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3954416
3954490
+
Gly
GCC
-
¡û
>C191143926
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
2333241
2333167
-
Gly
GCC
-
¡û
>C191143943
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
1975935
1975861
-
Gly
GCC
-
¡û
>W09108254
ABTC01000006
Bacillota
Anaerococcus prevotii DSM 20548 [ABTC]
151967
151893
-
Gly
GCC
[ENA]
¡û
>W09108266
ABTC01000018
Bacillota
Anaerococcus prevotii DSM 20548 [ABTC]
7913
7987
+
Gly
GCC
[ENA]
¡û
>W1910154772
BIMA01000090
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
15944
15870
-
Gly
GCC
[ENA]
¡û
>W1910154792
BIMA01000141
Bacillota
Paenibacillus koleovorans NBRC 103111 [BIMA]
14980
14906
-
Gly
GCC
[ENA]
¡û
>W1911771177
QXJP01000005
Bacillota
Longirhabdus pacifica SCSIO 06110 [QXJP]
803
877
+
Gly
GCC
[ENA]
¡û
>W1911771194
QXJP01000008
Bacillota
Longirhabdus pacifica SCSIO 06110 [QXJP]
169975
169901
-
Gly
GCC
[ENA]
¡û
>W1810674252
QJVJ01000016
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
154293
154219
-
Gly
GCC
[ENA]
¡û
>W1810674264
QJVJ01000018
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
121424
121350
-
Gly
GCC
[ENA]
¡û
>W1810674271
QJVJ01000027
Bacillota
Paenibacillus flagellatus DXL2 [QJVJ]
655
726
+
Gly
GCC
[ENA]
¡û
>C10101172
CP001708
Bacillota
Anaerococcus prevotii DSM 20548 [CP001708]
1466721
1466647
-
Gly
GCC
[Ensembl]
¡û
>C10101183
CP001708
Bacillota
Anaerococcus prevotii DSM 20548 [CP001708]
1425973
1425899
-
Gly
GCC
[Ensembl]
¡û
>W11141237
AENP01000032
Bacillota
Peptoniphilus harei ACS-146-V-Sch2b [AENP]
82638
82564
-
Gly
GCC
[ENA]
¡û
>W1511577177
LAQO01000012
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
567
641
+
Gly
GCC
[ENA]
¡û
>W1511577190
LAQO01000018
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
188630
188556
-
Gly
GCC
[ENA]
¡û
>W1511577202
LAQO01000030
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
99461
99387
-
Gly
GCC
[ENA]
¡û
>W1511705888
LGSS01000016
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
17890
17964
+
Gly
GCC
[ENA]
¡û
>W1511705906
LGSS01000039
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
3912
3838
-
Gly
GCC
[ENA]
¡û
>W1511705911
LGSS01000047
Bacillota
Gottschalkia purinilytica DSM 1384 [LGSS]
1456
1382
-
Gly
GCC
[ENA]
¡û
>W1610082723
BDGM01000001
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
161109
161035
-
Gly
GCC
[ENA]
¡û
>W1610082774
BDGM01000044
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1204
1278
+
Gly
GCC
[ENA]
¡û
>W1610082788
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1471
1545
+
Gly
GCC
[ENA]
¡û
>W1610734569
LMLV01000002
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
10703
10777
+
Gly
GCC
[ENA]
¡û
>W1610734596
LMLV01000013
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
63045
62971
-
Gly
GCC
[ENA]
¡û
>W1610734613
LMLV01000032
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
1355
1429
+
Gly
GCC
[ENA]
¡û
>W1610915159
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
227472
227546
+
Gly
GCC
[ENA]
¡û
>W1610915167
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
356336
356410
+
Gly
GCC
[ENA]
¡û
>W1710081897
BDGM01000001
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
161109
161035
-
Gly
GCC
[ENA]
¡û
>W1710081948
BDGM01000044
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1204
1278
+
Gly
GCC
[ENA]
¡û
>W1710081962
BDGM01000045
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
1471
1545
+
Gly
GCC
[ENA]
¡û
>W1710082573
BDHH01000006
Bacillota
Fusibacter sp. 3D3 [BDHH]
2269
2343
+
Gly
GCC
[ENA]
¡û
>W1710082581
BDHH01000007
Bacillota
Fusibacter sp. 3D3 [BDHH]
1487
1561
+
Gly
GCC
[ENA]
¡û
>W1710560607
FONN01000010
Bacillota
Paenibacillus algorifonticola [FONN]
212390
212316
-
Gly
GCC
[ENA]
¡û
>W1710560621
FONN01000013
Bacillota
Paenibacillus algorifonticola [FONN]
1646
1720
+
Gly
GCC
[ENA]
¡û
>W1710560632
FONN01000019
Bacillota
Paenibacillus algorifonticola [FONN]
5697
5771
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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