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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404604 (33 seq.)
>W1711108857
LTUC01000113
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
21943
22017
+
Gln
TTG
[ENA]
¡û
>W1711186931
LWOP01000061
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
37316
37388
+
Gln
TTG
[ENA]
¡û
>W1711186957
LWOR01000015
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
25393
25321
-
Gln
TTG
[ENA]
¡û
>W1711517368
MLJM01000025
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
23176
23250
+
Gln
TTG
[ENA]
¡û
>W131159183
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
264640
264712
+
Gln
TTG
[ENA]
¡û
>W131159221
AQUW01000002
Actinomycetota
Corynebacterium ciconiae DSM 44920 [AQUW]
152299
152371
+
Gln
TTG
[ENA]
¡û
>WENV180773574
ODIJ01000641
[ODIJ] human metagenome; G_DNA_Tongue dorsum
15794
15866
+
Gln
TTG
[ENA]
¢þ
>WENV180806148
ODJH01002984
[ODJH] human metagenome; G_DNA_Tongue dorsum
1467
1539
+
Gln
TTG
[ENA]
¢þ
>W141243563
CAJP01000024
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
21075
21147
+
Pseudo
TTG
[ENA]
¡û
>WENV182643070
OJLS01000420
[OJLS] metagenome; surface
2616
2544
-
Gln
TTG
[ENA]
¢þ
>WENV183097954
OLNE01021317
[OLNE] human gut metagenome; faeces
1104
1176
+
Gln
TTG
[ENA]
¢þ
>C181039054
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
843234
843162
-
Gln
TTG
-
¡û
>C181143909
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
795714
795642
-
Gln
TTG
-
¡û
>C191209529
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
2372944
2373016
+
Gln
TTG
-
¡û
>C191209716
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
1162748
1162820
+
Gln
TTG
-
¡û
>C191210887
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
1035045
1035117
+
Gln
TTG
-
¡û
>W09124037
ACHJ01000032
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
4427
4499
+
Gln
TTG
[ENA]
¡û
>W09127954
ACLJ01000027
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
39773
39701
-
Gln
TTG
[ENA]
¡û
>W1910339893
FTLL01000010
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
133367
133439
+
Gln
TTG
[ENA]
¡û
>C141004811
CP006365
Actinomycetota
Corynebacterium argentoratense DSM 44202 [CP006365]
651938
651864
-
Gln
TTG
[Ensembl]
¡û
>W1911551195
OVSI01000002
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
163002
163074
+
Gln
TTG
[ENA]
¡û
>W1911596534
PNHG01000001
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
236159
236087
-
Gln
TTG
[ENA]
¡û
>W1810187346
PKHN01000002
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
72758
72830
+
Gln
TTG
[ENA]
¡û
>W1810568892
QEEY01000005
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
48526
48598
+
Gln
TTG
[ENA]
¡û
>C151079768
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
1751839
1751911
+
Gln
TTG
[Ensembl]
¡û
>W1511351445
JRNG01000026
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
23924
23852
-
Gln
TTG
[ENA]
¡û
>W1511542035
JZEZ01000020
Actinomycetota
Corynebacterium argentoratense CNM 463/05 [JZEZ]
15466
15540
+
Gln
TTG
[ENA]
¡û
>W1511542069
JZFA01000013
Actinomycetota
Corynebacterium argentoratense CNM 601/08 [JZFA]
47863
47937
+
Gln
TTG
[ENA]
¡û
>C161041039
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
1160454
1160526
+
Gln
TTG
[Ensembl]
¡û
>W1610436838
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
414110
414184
+
Gln
TTG
[ENA]
¡û
>W1710436574
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
414110
414184
+
Gln
TTG
[ENA]
¡û
>W1710563025
FOPJ01000004
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
153670
153742
+
Gln
TTG
[ENA]
¡û
>W1710598785
FTOF01000006
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
96204
96276
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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