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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404610 (33 seq.)
>W1710867793
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
422229
422303
+
Arg
CCT
[ENA]
¡û
>W1710876078
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
653356
653282
-
Arg
CCT
[ENA]
¡û
>W1710876133
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
852950
853024
+
Arg
CCT
[ENA]
¡û
>W131235261
AULK01000005
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
25561
25486
-
Arg
CCT
[ENA]
¡û
>W1711360795
MDJY01000044
Actinomycetota
Clavibacter michiganensis [MDJY]
105479
105405
-
Arg
CCT
[ENA]
¡û
>W1711385627
MEEK01000011
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
7524
7599
+
Arg
CCT
[ENA]
¡û
>W1711961763
NCSR01000022
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
42631
42559
-
Arg
CCT
[ENA]
¡û
>C171111576
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1162966
1163040
+
Arg
CCT
-
¡û
>WENV180018347
FSYX01000164
[FSYX] metagenome; soil
2894
2822
-
Arg
CCT
[ENA]
¢þ
>WENV180028929
FTJH01492466
[FTJH] metagenome; soil
92
20
-
Arg
CCT
[ENA]
¢þ
>W141146513
AWVQ01000447
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
12992
12918
-
Arg
CCT
[ENA]
¡û
>WENV170713521
LNFM01033710
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2054
2128
+
Arg
CCT
[ENA]
¢þ
>WENV170923083
MDTG01042765
[MDTG] marine metagenome; seawater
1209
1283
+
Arg
CCT
[ENA]
¢þ
>WENV170935543
MDTG01258941
[MDTG] marine metagenome; seawater
14
88
+
Arg
CCT
[ENA]
¢þ
>WENV170938582
MDTG01311335
[MDTG] marine metagenome; seawater
6580
6654
+
Arg
CCT
[ENA]
¢þ
>C181001432
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
656297
656369
+
Arg
CCT
-
¡û
>C191056084
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
2299870
2299797
-
Arg
CCT
-
¡û
>C191100984
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2136392
2136464
+
Arg
CCT
-
¡û
>C191122399
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1211550
1211477
-
Arg
CCT
-
¡û
>C191158804
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2628597
2628669
+
Arg
CCT
-
¡û
>W1910839858
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1725533
1725460
-
Arg
CCT
[ENA]
¡û
>W1911075329
NMUN01000005
Actinomycetota
Microbacterium sp. BR1 [NMUN]
311916
311844
-
Arg
CCT
[ENA]
¡û
>W1911681958
QKLB01000007
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
51830
51757
-
Arg
CCT
[ENA]
¡û
>W1810242579
PPXD01000001
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
271094
271167
+
Arg
CCT
[ENA]
¡û
>W1810570363
QEIJ01000003
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
297306
297379
+
Arg
CCT
[ENA]
¡û
>W1810586223
QFFE01000006
Actinomycetota
Microbacterium sp. KCTC 39802 [QFFE]
201602
201530
-
Arg
CCT
[ENA]
¡û
>W1810861604
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
2878115
2878188
+
Arg
CCT
[ENA]
¡û
>W1511352460
JROD01000015
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
96556
96482
-
Arg
CCT
[ENA]
¡û
>W1511528979
JYJA01000032
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
169005
168930
-
Arg
CCT
[ENA]
¡û
>W1610730139
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
422229
422303
+
Arg
CCT
[ENA]
¡û
>W1610738424
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
653356
653282
-
Arg
CCT
[ENA]
¡û
>W1610738479
LMOZ01000001
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
852950
853024
+
Arg
CCT
[ENA]
¡û
>W1710608051
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
320056
320130
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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