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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404641 (46 seq.)
>W1710797152
LJSU01000019
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
105890
105816
-
Val
CAC
[ENA]
¡û
>W131164632
ARAY01000002
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
7958
7884
-
Val
CAC
[ENA]
¡û
>W1711282614
LZNT01000122
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
76809
76883
+
Val
CAC
[ENA]
¡û
>W1712106665
NIVZ01000001
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
363878
363804
-
Val
CAC
[ENA]
¡û
>W1712106714
NIWA01000002
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
160661
160587
-
Val
CAC
[ENA]
¡û
>W1712106769
NIWB01000006
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
31903
31829
-
Val
CAC
[ENA]
¡û
>W1712106801
NIWC01000001
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
379436
379362
-
Val
CAC
[ENA]
¡û
>WENV180209977
OBAL01055531
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
222
148
-
Val
CAC
[ENA]
¢þ
>W141065857
AQRC01000005
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
181945
181871
-
Val
CAC
[ENA]
¡û
>WENV181233971
OFET01000485
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1358
1284
-
Val
CAC
[ENA]
¢þ
>WENV181234075
OFET01001912
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
4250
4176
-
Val
CAC
[ENA]
¢þ
>WENV181234261
OFEU01000015
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
105855
105781
-
Val
CAC
[ENA]
¢þ
>WENV181234491
OFEU01000214
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
48177
48103
-
Val
CAC
[ENA]
¢þ
>WENV181234627
OFEU01000711
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
10477
10551
+
Val
CAC
[ENA]
¢þ
>WENV181234724
OFEU01002160
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1359
1285
-
Val
CAC
[ENA]
¢þ
>WENV182547985
OJBU01008033
[OJBU] seawater metagenome; Sea water
417
491
+
Val
CAC
[ENA]
¢þ
>WENV182592876
OJIS01000359
[OJIS] seawater metagenome; Sea water
9049
8975
-
Val
CAC
[ENA]
¢þ
>WENV183512542
OMKS01000706
[OMKS] sediment metagenome; hot spring sediment
24997
24923
-
Val
CAC
[ENA]
¢þ
>WENV170016455
AZIK01006288
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
68
142
+
Val
CAC
[ENA]
¢þ
>WENV170016508
AZIK01011228
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
304
230
-
Val
CAC
[ENA]
¢þ
>WENV170229335
CEQG01106415
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
277
+
Val
CAC
[ENA]
¢þ
>WENV170975252
MTKY01099255
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1554
1480
-
Val
CAC
[ENA]
¢þ
>W09132534
ACNW01000073
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
27231
27305
+
Val
CAC
[ENA]
¡û
>C181008673
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
2109844
2109770
-
Val
CAC
-
¡û
>C181008843
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
2546837
2546763
-
Val
CAC
-
¡û
>C181009131
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
2092532
2092458
-
Val
CAC
-
¡û
>C191160521
CP038492
Alphaproteobacteria
Rhodophyticola sp. CCM32 [CP038492]
1806981
1806907
-
Val
CAC
-
¡û
>W1910549350
FZPF01000004
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
156062
155988
-
Val
CAC
[ENA]
¡û
>W1911081217
NMZM01000004
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
270154
270228
+
Val
CAC
[ENA]
¡û
>W1911538457
OMOJ01000004
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
127877
127803
-
Val
CAC
[ENA]
¡û
>W1911538641
OMOQ01000001
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
945223
945297
+
Val
CAC
[ENA]
¡û
>W1810268886
PRDS01000002
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
314798
314724
-
Val
CAC
[ENA]
¡û
>W1810364310
PVTD01000001
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
258347
258421
+
Val
CAC
[ENA]
¡û
>W1810477609
QAOY01000002
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
160875
160801
-
Val
CAC
[ENA]
¡û
>W1810584045
QEYE01000035
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
1200
1126
-
Val
CAC
[ENA]
¡û
>W1810596872
QGGW01000001
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
788849
788775
-
Val
CAC
[ENA]
¡û
>W1810692274
QLIW01000001
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
612375
612301
-
Val
CAC
[ENA]
¡û
>W1810721886
QNTQ01000001
Alphaproteobacteria
Rhodosalinus halophilus E84 [QNTQ]
241024
240950
-
Val
CAC
[ENA]
¡û
>C151006141
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
2533123
2533197
+
Val
CAC
[Ensembl]
¡û
>W1511387342
JSUQ01000012
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
312799
312873
+
Val
CAC
[ENA]
¡û
>W1610014752
AONG01000012
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
7959
7885
-
Val
CAC
[ENA]
¡û
>W1610526225
JPPB01000050
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
293
367
+
Val
CAC
[ENA]
¡û
>W1610661109
LJSU01000019
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
105890
105816
-
Val
CAC
[ENA]
¡û
>W1710011643
AONG01000012
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
7959
7885
-
Val
CAC
[ENA]
¡û
>W1710512324
FMZI01000002
Alphaproteobacteria
Mameliella alba [FMZI]
341092
341166
+
Val
CAC
[ENA]
¡û
>W1710627526
JPPB01000050
Alphaproteobacteria
alpha proteobacterium 3107 [JPPB]
293
367
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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