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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404652 (25 seq.)
>W131229995
AUHG01000010
Bacteroidota
Christiangramia echinicola DSM 19838 [AUHG]
467921
467995
+
Arg
CCT
[ENA]
¡û
>W131236992
AUMT01000004
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
161710
161784
+
Arg
CCT
[ENA]
¡û
>C171074053
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
2201362
2201288
-
Arg
CCT
-
¡û
>C171083788
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
2225475
2225401
-
Arg
CCT
-
¡û
>C009882
CU207366
Bacteroidota
Christiangramia forsetii KT0803 [CU207366]
3612688
3612759
+
Arg
CCT
[Ensembl]
¡û
>W141168423
AXUZ01000009
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
91741
91815
+
Arg
CCT
[ENA]
¡û
>WENV170176732
CEOS01117168
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
848
776
-
Arg
CCT
[ENA]
¢þ
>WENV170579577
FUFK010039803
[FUFK] metagenome; unknown
234
306
+
Arg
CCT
[ENA]
¢þ
>WENV170582515
FUFK010082790
[FUFK] metagenome; unknown
535
461
-
Arg
CCT
[ENA]
¢þ
>WENV170592273
FUFK010803582
[FUFK] metagenome; unknown
476
404
-
Arg
CCT
[ENA]
¢þ
>WENV170922647
MDTG01034810
[MDTG] marine metagenome; seawater
3704
3778
+
Arg
CCT
[ENA]
¢þ
>C181056712
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
1202612
1202540
-
Arg
CCT
-
¡û
>C191204320
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
440566
440494
-
Arg
CCT
-
¡û
>W09126961
ACKQ01000007
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
362849
362775
-
Arg
CCT
[ENA]
¡û
>W141809488
JPRN01000008
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
165285
165213
-
Arg
CCT
[ENA]
¡û
>C09106212
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
949631
949703
+
Arg
CCT
[Ensembl]
¡û
>W1911701269
QNUF01000015
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
107338
107410
+
Arg
CCT
[ENA]
¡û
>W1810504125
QBKQ01000001
Bacteroidota
Christiangramia gaetbulicola DSM 23082 [QBKQ]
944827
944755
-
Arg
CCT
[ENA]
¡û
>W1511433358
JUHD01000016
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
16642
16714
+
Arg
CCT
[ENA]
¡û
>W121086489
AKJY01000101
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
79351
79425
+
Arg
CCT
[ENA]
¡û
>W1710010660
AMRU01000001
Bacteroidota
Christiangramia flava JLT2011 [AMRU]
335848
335776
-
Arg
CCT
[ENA]
¡û
>W1710554844
FOIU01000001
Bacteroidota
Chryseobacterium wanjuense [FOIU]
1535470
1535544
+
Arg
CCT
[ENA]
¡û
>W1710565762
FORL01000005
Bacteroidota
Chryseobacterium indologenes [FORL]
90593
90665
+
Arg
CCT
[ENA]
¡û
>W1710576769
FPAG01000001
Bacteroidota
Zhouia amylolytica [FPAG]
250290
250364
+
Arg
CCT
[ENA]
¡û
>W1710606016
FWXM01000001
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
798439
798511
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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