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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404657 (100 seq.)
>W1710791878
LJOD01000001
Bacteroidota
Chryseobacterium indologenes [LJOD]
232617
232545
-
Arg
TCG
[ENA]
¡û
>W1710987483
LPUR01000001
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
594850
594776
-
Arg
TCG
[ENA]
¡û
>W1711132207
LUVZ01000034
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
361484
361410
-
Arg
TCG
[ENA]
¡û
>W1711318379
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
1753803
1753729
-
Arg
TCG
[ENA]
¡û
>W1711318426
MAYH01000001
Bacteroidota
Chryseobacterium artocarpi [MAYH]
674609
674683
+
Arg
TCG
[ENA]
¡û
>W1711505113
MKVE01000023
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
112239
112165
-
Arg
TCG
[ENA]
¡û
>W1711767790
MVAG01000128
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
91623
91695
+
Arg
TCG
[ENA]
¡û
>W1711799546
MWZC01000842
Bacteroidota
Chryseobacterium mucoviscidosis VT-16-81 [MWZC]
56
128
+
Arg
TCG
[ENA]
¡û
>C171083782
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
3017887
3017813
-
Arg
TCG
-
¡û
>WENV181167845
OEIU01089142
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
158
86
-
Arg
TCG
[ENA]
¢þ
>W141168440
AXUZ01000015
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
132038
131966
-
Arg
TCG
[ENA]
¡û
>W141233106
BAVL01000007
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
390100
390174
+
Arg
TCG
[ENA]
¡û
>W141261498
CCAV010000002
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
315765
315837
+
Arg
TCG
[ENA]
¡û
>WENV183741646
PJUG01000284
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
8012
8084
+
Arg
TCG
[ENA]
¢þ
>WENV183742537
PJUI01000010
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
166021
166093
+
Arg
TCG
[ENA]
¢þ
>WENV170009832
APMI01003664
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
50104
50176
+
Arg
TCG
[ENA]
¢þ
>WENV170010025
APMI01006948
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
245
173
-
Arg
TCG
[ENA]
¢þ
>WENV170010026
APMI01006949
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
293
221
-
Arg
TCG
[ENA]
¢þ
>C181056706
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
2089566
2089493
-
Arg
TCG
-
¡û
>C181061666
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
1403020
1402948
-
Arg
TCG
-
¡û
>C181075412
CP023049
Bacteroidota
Chryseobacterium piperi ATCC BAA-1782 [CP023049]
510038
510110
+
Arg
TCG
-
¡û
>C181092480
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
2138365
2138293
-
Arg
TCG
-
¡û
>C191111298
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
3124131
3124203
+
Arg
TCG
-
¡û
>C191112480
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
2528139
2528067
-
Arg
TCG
-
¡û
>C191112886
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
1619231
1619303
+
Arg
TCG
-
¡û
>C191115220
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
1916158
1916231
+
Arg
TCG
-
¡û
>C191115453
CP033918
Bacteroidota
Chryseobacterium sp. G0186 [CP033918]
1085226
1085154
-
Arg
TCG
-
¡û
>C191115660
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
4502535
4502607
+
Arg
TCG
-
¡û
>C191115793
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
927571
927499
-
Arg
TCG
-
¡û
>C191116042
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
1060144
1060072
-
Arg
TCG
-
¡û
>C191116262
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
1257544
1257472
-
Arg
TCG
-
¡û
>C191204313
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
1653901
1653828
-
Arg
TCG
-
¡û
>C191210006
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
3609617
3609545
-
Arg
TCG
-
¡û
>C191218981
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
1217344
1217272
-
Arg
TCG
-
¡û
>W09126980
ACKQ01000042
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
29198
29272
+
Arg
TCG
[ENA]
¡û
>W141802069
JPEQ01000004
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
835192
835266
+
Arg
TCG
[ENA]
¡û
>W141809304
JPRJ01000013
Bacteroidota
Chryseobacterium piperi [JPRJ]
51442
51516
+
Arg
TCG
[ENA]
¡û
>W141809563
JPRO01000038
Bacteroidota
Chryseobacterium luteum [JPRO]
1135
1061
-
Arg
TCG
[ENA]
¡û
>W141815942
JQJM01000039
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
39822
39896
+
Arg
TCG
[ENA]
¡û
>W141817736
JQKZ01000027
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
4098
4026
-
Arg
TCG
[ENA]
¡û
>W141819098
JQMA01000027
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
4105
4033
-
Arg
TCG
[ENA]
¡û
>W1910184801
BJTC01000002
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
33871
33943
+
Arg
TCG
[ENA]
¡û
>W1910341189
FTPE01000014
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
232062
232134
+
Arg
TCG
[ENA]
¡û
>W1910439676
FWDI01000005
Bacteroidota
Chryseobacterium phocaeense 6021061333 [FWDI]
2088664
2088592
-
Arg
TCG
[ENA]
¡û
>W1911218394
NRQS01000003
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
110994
111066
+
Arg
TCG
[ENA]
¡û
>W1911218482
NRQT01000009
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
110993
111065
+
Arg
TCG
[ENA]
¡û
>W1911566400
PCOU01000025
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
27500
27428
-
Arg
TCG
[ENA]
¡û
>W1911567040
PCPH01000002
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
72621
72693
+
Arg
TCG
[ENA]
¡û
>W1911567466
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
1289091
1289019
-
Arg
TCG
[ENA]
¡û
>W1911586376
PIZV01000012
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
4294
4222
-
Arg
TCG
[ENA]
¡û
>W1911647577
QAJO01000014
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
69467
69539
+
Arg
TCG
[ENA]
¡û
>W1911680434
QICI01000082
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
100962
101034
+
Arg
TCG
[ENA]
¡û
>W1911680477
QICX01000004
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
7417
7345
-
Arg
TCG
[ENA]
¡û
>W1911701229
QNUE01000027
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
22273
22201
-
Arg
TCG
[ENA]
¡û
>W1911701351
QNUH01000002
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
80518
80590
+
Arg
TCG
[ENA]
¡û
>W1911701878
QNVU01000022
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
58935
59007
+
Arg
TCG
[ENA]
¡û
>W1911701919
QNVV01000001
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
322941
322869
-
Arg
TCG
[ENA]
¡û
>W1911749781
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
2811425
2811353
-
Arg
TCG
[ENA]
¡û
>W1911749845
QWIV01000014
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
369087
369015
-
Arg
TCG
[ENA]
¡û
>W1810234222
PPEG02000005
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
118536
118608
+
Arg
TCG
[ENA]
¡û
>W1810234350
PPEI02000001
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
512572
512500
-
Arg
TCG
[ENA]
¡û
>W1810385660
PXUE01000001
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
1429444
1429516
+
Arg
TCG
[ENA]
¡û
>W1810475305
QAIX01000812
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
616
544
-
Arg
TCG
[ENA]
¡û
>W1810475412
QAJA01000006
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
1710
1782
+
Arg
TCG
[ENA]
¡û
>W1810538611
QDFZ01000010
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
118694
118766
+
Arg
TCG
[ENA]
¡û
>W1810570126
QEHP01000096
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
27510
27438
-
Arg
TCG
[ENA]
¡û
>W1810609236
QGTV01000013
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
52926
52854
-
Arg
TCG
[ENA]
¡û
>W1810707187
QNFY01000003
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
385055
384983
-
Arg
TCG
[ENA]
¡û
>W1810860715
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
1205502
1205574
+
Arg
TCG
[ENA]
¡û
>C151062217
CP009928
Bacteroidota
Chryseobacterium gallinarum DSM 27622 [CP009928]
4431405
4431331
-
Arg
TCG
[Ensembl]
¡û
>W1510072570
CDHM01000002
Bacteroidota
Chryseobacterium oranimense G311 [CDHM]
315765
315837
+
Arg
TCG
[ENA]
¡û
>W1511432085
JUGG01000014
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
94135
94209
+
Arg
TCG
[ENA]
¡û
>W1511432439
JUGN01000011
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
979316
979390
+
Arg
TCG
[ENA]
¡û
>W1511432493
JUGO01000006
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
96163
96089
-
Arg
TCG
[ENA]
¡û
>W1511432567
JUGP01000004
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
159056
158984
-
Arg
TCG
[ENA]
¡û
>W1511432919
JUGW01000003
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
81093
81021
-
Arg
TCG
[ENA]
¡û
>W1511685110
LFND01000003
Bacteroidota
Chryseobacterium angstadtii KM [LFND]
714180
714254
+
Arg
TCG
[ENA]
¡û
>W1511685178
LFNE01000003
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
297871
297943
+
Arg
TCG
[ENA]
¡û
>W1511685250
LFNF01000002
Bacteroidota
Chryseobacterium sp. BLS98 [LFNF]
16327
16253
-
Arg
TCG
[ENA]
¡û
>C161055083
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
1891322
1891250
-
Arg
TCG
[Ensembl]
¡û
>W121086485
AKJY01000076
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
3797
3725
-
Arg
TCG
[ENA]
¡û
>W1610205676
FCNN01000202
Bacteroidota
Chryseobacterium indologenes [FCNN]
12612
12538
-
Arg
TCG
[ENA]
¡û
>W1610436716
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
2027472
2027400
-
Arg
TCG
[ENA]
¡û
>W1610655803
LJOD01000001
Bacteroidota
Chryseobacterium indologenes [LJOD]
232617
232545
-
Arg
TCG
[ENA]
¡û
>W1610842427
LPUR01000001
Bacteroidota
Chryseobacterium kwangjuense [LPUR]
594850
594776
-
Arg
TCG
[ENA]
¡û
>W1610943280
LUVZ01000034
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
361484
361410
-
Arg
TCG
[ENA]
¡û
>W1611061722
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
1753803
1753729
-
Arg
TCG
[ENA]
¡û
>W1611061769
MAYH01000001
Bacteroidota
Chryseobacterium artocarpi [MAYH]
674609
674683
+
Arg
TCG
[ENA]
¡û
>W1710207177
FCNN01000202
Bacteroidota
Chryseobacterium indologenes [FCNN]
12612
12538
-
Arg
TCG
[ENA]
¡û
>W1710436452
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
2027472
2027400
-
Arg
TCG
[ENA]
¡û
>W1710526640
FNKL01000004
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
352473
352545
+
Arg
TCG
[ENA]
¡û
>W1710540294
FNWQ01000002
Bacteroidota
Chryseobacterium culicis [FNWQ]
1037173
1037099
-
Arg
TCG
[ENA]
¡û
>W1710554840
FOIU01000001
Bacteroidota
Chryseobacterium wanjuense [FOIU]
1060949
1061021
+
Arg
TCG
[ENA]
¡û
>W1710565722
FORL01000001
Bacteroidota
Chryseobacterium indologenes [FORL]
597352
597426
+
Arg
TCG
[ENA]
¡û
>W1710585913
FQWT01000001
Bacteroidota
Chryseobacterium oranimense [FQWT]
348245
348173
-
Arg
TCG
[ENA]
¡û
>W1710596339
FTMM01000028
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
25215
25143
-
Arg
TCG
[ENA]
¡û
>W1710596725
FTMT01000036
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
23582
23656
+
Arg
TCG
[ENA]
¡û
>W1710598401
FTNZ01000001
Bacteroidota
Chryseobacterium joostei [FTNZ]
383493
383567
+
Arg
TCG
[ENA]
¡û
>W1710599043
FTOL01000001
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
823504
823578
+
Arg
TCG
[ENA]
¡û
>W1710599627
FTOV01000009
Bacteroidota
Chryseobacterium gambrini [FTOV]
102939
102867
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK