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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404662 (92 seq.)
>W1710926754
LOEL01000023
Bacteroidota
Porphyromonas gingivalis [LOEL]
29302
29376
+
Arg
CCT
[ENA]
¡û
>W131175793
ARJN01000039
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
8868
8940
+
Arg
CCT
[ENA]
¡û
>W131111453
APMB01000260
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
2108
2182
+
Arg
CCT
[ENA]
¡û
>W1712084858
NHRU01000002
Bacteroidota
Porphyromonas gingivalis [NHRU]
116230
116304
+
Arg
CCT
[ENA]
¡û
>C016364
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1394153
1394227
+
Arg
CCT
[Ensembl]
¡û
>WENV180004925
FLRT01008124
[FLRT] metagenome; saliva
41
115
+
Arg
CCT
[ENA]
¢þ
>WENV180006383
FLRY01023605
[FLRY] metagenome; saliva
254
328
+
Arg
CCT
[ENA]
¢þ
>WENV180006861
FLRZ01002749
[FLRZ] metagenome; saliva
826
900
+
Arg
CCT
[ENA]
¢þ
>WENV180009648
FLSC01036663
[FLSC] metagenome; saliva
112
38
-
Arg
CCT
[ENA]
¢þ
>WENV180010515
FLSD01003694
[FLSD] metagenome; saliva
225
151
-
Arg
CCT
[ENA]
¢þ
>WENV180010953
FLSI01033299
[FLSI] metagenome; saliva
15
89
+
Arg
CCT
[ENA]
¢þ
>WENV180011752
FLSK01037812
[FLSK] metagenome; saliva
187
261
+
Arg
CCT
[ENA]
¢þ
>WENV180551743
OCJG01043298
[OCJG] human oral metagenome; human oral
160
234
+
Arg
CCT
[ENA]
¢þ
>WENV180696607
ODCT01032792
[ODCT] human metagenome; G_DNA_Buccal mucosa
213
139
-
Arg
CCT
[ENA]
¢þ
>WENV180731718
ODGW01008217
[ODGW] human metagenome; G_DNA_Supragingival plaque
812
738
-
Arg
CCT
[ENA]
¢þ
>W141074440
ASYL01000093
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
9826
9900
+
Arg
CCT
[ENA]
¡û
>W141145625
AWUU01000033
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
4665
4591
-
Arg
CCT
[ENA]
¡û
>W141145663
AWUV01000018
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
2047
2121
+
Arg
CCT
[ENA]
¡û
>W141145705
AWUW01000028
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
3968
3894
-
Arg
CCT
[ENA]
¡û
>W141145948
AWVC01000067
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
3892
3818
-
Arg
CCT
[ENA]
¡û
>W141146005
AWVD01000114
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
1929
2003
+
Arg
CCT
[ENA]
¡û
>W141146038
AWVE01000068
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
1940
2014
+
Arg
CCT
[ENA]
¡û
>WENV182005037
OHBE01001587
[OHBE] human gut metagenome; faeces
17230
17156
-
Arg
CCT
[ENA]
¢þ
>C08007282
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
1229586
1229660
+
Arg
CCT
[Ensembl]
¡û
>WENV183507901
OMGZ01000146
[OMGZ] human oral metagenome; human oral
2187
2261
+
Arg
CCT
[ENA]
¢þ
>WENV183510905
OMHT01000304
[OMHT] human oral metagenome; human oral
385
311
-
Arg
CCT
[ENA]
¢þ
>C181102091
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
2332296
2332222
-
Arg
CCT
-
¡û
>C181102127
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1531641
1531715
+
Arg
CCT
-
¡û
>C181102184
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
2098878
2098804
-
Arg
CCT
-
¡û
>C181102245
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1085769
1085695
-
Arg
CCT
-
¡û
>C181102272
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
1377775
1377849
+
Arg
CCT
-
¡û
>C181102335
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1534491
1534417
-
Arg
CCT
-
¡û
>C181102371
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
2154432
2154506
+
Arg
CCT
-
¡û
>C181102437
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
2139466
2139392
-
Arg
CCT
-
¡û
>C181102458
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
364509
364583
+
Arg
CCT
-
¡û
>C181102541
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1363696
1363622
-
Arg
CCT
-
¡û
>C181102571
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
2385593
2385519
-
Arg
CCT
-
¡û
>C181123586
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
1230641
1230715
+
Arg
CCT
-
¡û
>C181123665
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
832635
832561
-
Arg
CCT
-
¡û
>C181123714
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1021508
1021434
-
Arg
CCT
-
¡û
>W1910371027
FUFB01000040
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
18933
18859
-
Arg
CCT
[ENA]
¡û
>W1910371060
FUFC01000015
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
25528
25454
-
Arg
CCT
[ENA]
¡û
>W1910371121
FUFD01000057
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
4134
4060
-
Arg
CCT
[ENA]
¡û
>W1910371151
FUFE01000062
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
35331
35257
-
Arg
CCT
[ENA]
¡û
>W1910371179
FUFF01000006
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
113952
113878
-
Arg
CCT
[ENA]
¡û
>W1910371253
FUFG01000046
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
161643
161569
-
Arg
CCT
[ENA]
¡û
>W1910371267
FUFH01000019
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
4720
4646
-
Arg
CCT
[ENA]
¡û
>W1910371328
FUFI01000032
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
4506
4432
-
Arg
CCT
[ENA]
¡û
>W1910371380
FUFJ01000068
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
40906
40980
+
Arg
CCT
[ENA]
¡û
>W1910372571
FUGF01000039
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
10587
10661
+
Arg
CCT
[ENA]
¡û
>W1910372608
FUGG01000020
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
40631
40705
+
Arg
CCT
[ENA]
¡û
>W1911247387
NSLL01000019
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
41527
41601
+
Arg
CCT
[ENA]
¡û
>W1911247428
NSLM01000016
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
41108
41182
+
Arg
CCT
[ENA]
¡û
>W1911247459
NSLN01000016
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
4837
4763
-
Arg
CCT
[ENA]
¡û
>W1911247520
NSLO01000046
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
2188
2262
+
Arg
CCT
[ENA]
¡û
>W1911247564
NSLP01000048
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
4871
4797
-
Arg
CCT
[ENA]
¡û
>W1911247606
NSLQ01000036
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
3808
3734
-
Arg
CCT
[ENA]
¡û
>W1911247637
NSLR01000022
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
5291
5217
-
Arg
CCT
[ENA]
¡û
>W1911247689
NSLS01000019
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
4284
4210
-
Arg
CCT
[ENA]
¡û
>W1911247732
NSLT01000036
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
4193
4119
-
Arg
CCT
[ENA]
¡û
>W1911247778
NSLU01000088
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
5924
5850
-
Arg
CCT
[ENA]
¡û
>W1911247825
NSLV01000061
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
2325
2399
+
Arg
CCT
[ENA]
¡û
>W1911247862
NSLW01000014
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
2407
2481
+
Arg
CCT
[ENA]
¡û
>W1911247894
NSLX01000011
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
2334
2408
+
Arg
CCT
[ENA]
¡û
>W1911709145
QPGS01000062
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
2544
2618
+
Arg
CCT
[ENA]
¡û
>W1810573721
QEKY01000006
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
142311
142383
+
Arg
CCT
[ENA]
¡û
>C151089067
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
729200
729126
-
Arg
CCT
-
¡û
>C151089114
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
662490
662416
-
Arg
CCT
-
¡û
>C11117315
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
2233038
2232964
-
Arg
CCT
[Ensembl]
¡û
>W1511328367
JQJE01000031
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
33205
33133
-
Arg
CCT
[ENA]
¡û
>W1511336145
JQZY01000029
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
31642
31570
-
Arg
CCT
[ENA]
¡û
>W1511336346
JRAE01000005
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
6578
6652
+
Arg
CCT
[ENA]
¡û
>W1511336414
JRAF01000050
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
4987
4915
-
Arg
CCT
[ENA]
¡û
>W1511336452
JRAG01000019
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
33319
33247
-
Arg
CCT
[ENA]
¡û
>W1511336554
JRAI01000079
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
36819
36891
+
Arg
CCT
[ENA]
¡û
>W1511336586
JRAJ01000011
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
73366
73438
+
Arg
CCT
[ENA]
¡û
>W1511336618
JRAK01000054
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
4475
4549
+
Arg
CCT
[ENA]
¡û
>W1511336654
JRAL01000012
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
4913
4841
-
Arg
CCT
[ENA]
¡û
>W1511336834
JRAQ01000022
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
67670
67742
+
Arg
CCT
[ENA]
¡û
>W1511336931
JRAT01000010
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
72460
72388
-
Arg
CCT
[ENA]
¡û
>W1511343909
JRFD01000004
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
4746
4674
-
Arg
CCT
[ENA]
¡û
>C161018139
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
1663255
1663329
+
Arg
CCT
[Ensembl]
¡û
>C161046927
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
1229356
1229430
+
Arg
CCT
-
¡û
>C161051800
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
690828
690754
-
Arg
CCT
-
¡û
>W121073541
AJZS01000003
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
2283
2357
+
Arg
CCT
[ENA]
¡û
>W1610060547
BCBV01000076
Bacteroidota
Porphyromonas gingivalis [BCBV]
4723
4649
-
Arg
CCT
[ENA]
¡û
>W1610784247
LOEL01000023
Bacteroidota
Porphyromonas gingivalis [LOEL]
29302
29376
+
Arg
CCT
[ENA]
¡û
>W1710017907
ASYM01000147
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
2075
2149
+
Arg
CCT
[ENA]
¡û
>W1710017908
ASYN01000015
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
2098
2172
+
Arg
CCT
[ENA]
¡û
>W1710017982
ASYO01000090
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
2042
2116
+
Arg
CCT
[ENA]
¡û
>W1710017998
ASYP01000007
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
2013
2087
+
Arg
CCT
[ENA]
¡û
>W1710057802
BCBV01000076
Bacteroidota
Porphyromonas gingivalis [BCBV]
4723
4649
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK