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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.405556 (84 seq.)
>W131165308
ARBL01000007
Actinomycetota
Catelliglobosispora koreensis DSM 44566 [ARBL]
289953
290025
+
Gln
CTG
[ENA]
¡û
>W1711261862
LYXF01000008
Actinomycetota
Micromonospora sp. II [LYXF]
124061
124133
+
Gln
CTG
[ENA]
¡û
>W131217655
ATXA01000002
Actinomycetota
Frankia sp. Iso899 [ATXA]
105173
105245
+
Gln
CTG
[ENA]
¡û
>W1711388709
MEIA01000274
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
17005
17077
+
Gln
CTG
[ENA]
¡û
>W131169304
AREQ01000011
Actinomycetota
Salinispora arenicola CNT849 [AREQ]
136107
136179
+
Gln
CTG
[ENA]
¡û
>W131171508
ARGG01000049
Actinomycetota
Salinispora fenicalii CNR942 [ARGG]
194830
194758
-
Gln
CTG
[ENA]
¡û
>W131171722
ARGK01000117
Actinomycetota
Salinispora pacifica CNS996 [ARGK]
127649
127721
+
Gln
CTG
[ENA]
¡û
>W131172485
ARGY01000071
Actinomycetota
Salinispora arenicola CNP193 [ARGY]
96775
96847
+
Gln
CTG
[ENA]
¡û
>W131173013
ARHI01000092
Actinomycetota
Salinispora pacifica CNQ768 [ARHI]
139691
139763
+
Gln
CTG
[ENA]
¡û
>W131173070
ARHJ01000081
Actinomycetota
Salinispora pacifica CNT584 [ARHJ]
137387
137459
+
Gln
CTG
[ENA]
¡û
>W131173158
ARHL01000104
Actinomycetota
Salinispora pacifica CNT851 [ARHL]
149074
149002
-
Gln
CTG
[ENA]
¡û
>W131173207
ARHM01000064
Actinomycetota
Salinispora arenicola CNY237 [ARHM]
91326
91254
-
Gln
CTG
[ENA]
¡û
>W131177312
ARKR01000085
Actinomycetota
Salinispora arenicola CNH877 [ARKR]
86789
86717
-
Gln
CTG
[ENA]
¡û
>W131177472
ARKU01000053
Actinomycetota
Salinispora arenicola CNY234 [ARKU]
254158
254230
+
Gln
CTG
[ENA]
¡û
>W131234373
AUKS01000014
Actinomycetota
Salinispora tropica CNT261 [AUKS]
88984
88912
-
Gln
CTG
[ENA]
¡û
>WENV180309171
OBJR01640971
[OBJR] soil metagenome; soil
134
206
+
Gln
CTG
[ENA]
¢þ
>WENV180356861
OBNL01056678
[OBNL] marine metagenome; ENVO:00002010
241
169
-
Gln
CTG
[ENA]
¢þ
>WENV180377192
OBON01002708
[OBON] marine metagenome; sea water
1302
1374
+
Gln
CTG
[ENA]
¢þ
>WENV181126388
OEFV01062333
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV181192565
OEPS010791594
[OEPS] soil metagenome; soil
164
236
+
Gln
CTG
[ENA]
¢þ
>WENV181309641
OFIW01019742
[OFIW] marine metagenome; seawater
127
55
-
Gln
CTG
[ENA]
¢þ
>WENV181371512
OFQV01010815
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
836
908
+
Gln
CTG
[ENA]
¢þ
>WENV181390968
OFRQ01008460
[OFRQ] seawater metagenome; seawater
922
994
+
Gln
CTG
[ENA]
¢þ
>WENV181401327
OFSF01125270
[OFSF] wastewater metagenome; Exp Tend VB 100WW
172
100
-
Gln
CTG
[ENA]
¢þ
>W141216764
AZVD01000004
Actinomycetota
Salinispora arenicola CNT799 [AZVD]
278167
278239
+
Gln
CTG
[ENA]
¡û
>W141218016
AZVZ01000004
Actinomycetota
Salinispora pacifica CNT131 [AZVZ]
220050
220122
+
Gln
CTG
[ENA]
¡û
>W141218159
AZWC01000005
Actinomycetota
Salinispora pacifica CNT001 [AZWC]
128811
128883
+
Gln
CTG
[ENA]
¡û
>W141218324
AZWF01000009
Actinomycetota
Salinispora arenicola CNR921 [AZWF]
129721
129649
-
Gln
CTG
[ENA]
¡û
>W141218378
AZWG01000008
Actinomycetota
Salinispora arenicola CNT850 [AZWG]
86442
86370
-
Gln
CTG
[ENA]
¡û
>W141218714
AZWN01000004
Actinomycetota
Salinispora pacifica CNR894 [AZWN]
220110
220182
+
Gln
CTG
[ENA]
¡û
>W141219467
AZXB01000017
Actinomycetota
Salinispora arenicola CNH905 [AZXB]
91737
91665
-
Gln
CTG
[ENA]
¡û
>W141242235
CAIE01000014
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
50530
50602
+
Gln
CTG
[ENA]
¡û
>WENV183626076
OOGH01009139
[OOGH] marine metagenome; seawater
956
1028
+
Gln
CTG
[ENA]
¢þ
>WENV183627581
OOGL01014192
[OOGL] marine metagenome; sea ice
902
974
+
Gln
CTG
[ENA]
¢þ
>WENV183629684
OOGQ01001052
[OOGQ] marine metagenome; seawater
753
681
-
Gln
CTG
[ENA]
¢þ
>WENV183630020
OOGR01004321
[OOGR] marine metagenome; seawater
223
151
-
Gln
CTG
[ENA]
¢þ
>WENV170567889
FLMP01008770
[FLMP] seawater metagenome; seawater
922
996
+
Gln
CTG
[ENA]
¢þ
>WENV170571077
FLOH01000065
[FLOH] marine metagenome; water
310222
310296
+
Gln
CTG
[ENA]
¢þ
>WENV170571898
FLOH01000366
[FLOH] marine metagenome; water
62347
62273
-
Gln
CTG
[ENA]
¢þ
>WENV170572291
FLOH01000704
[FLOH] marine metagenome; water
21861
21787
-
Gln
CTG
[ENA]
¢þ
>WENV170627403
FUWD013232685
[FUWD] metagenome; unknown
3089
3015
-
Gln
CTG
[ENA]
¢þ
>WENV170627494
FUWD013232959
[FUWD] metagenome; unknown
381367
381293
-
Gln
CTG
[ENA]
¢þ
>WENV170949444
MEHZ011419227
[MEHZ] marine metagenome; marine surface water
391
317
-
Gln
CTG
[ENA]
¢þ
>C191026491
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
7206396
7206324
-
Gln
CTG
-
¡û
>C191026840
CP024087
Actinomycetota
Micromonospora tulbaghiae CNY-010 [CP024087]
3898787
3898715
-
Gln
CTG
-
¡û
>W141734597
JNLS01000007
Actinomycetota
Salinispora arenicola [JNLS]
134102
134174
+
Gln
CTG
[ENA]
¡û
>W141758056
JNYJ01000005
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
23436
23364
-
Gln
CTG
[ENA]
¡û
>W141767712
JOEU01000008
Actinomycetota
Micromonospora purpureochromogenes [JOEU]
81159
81087
-
Gln
CTG
[ENA]
¡û
>W1910549515
FZPH01000021
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
71305
71233
-
Gln
CTG
[ENA]
¡û
>W1910901025
NGNT01000015
Actinomycetota
Micromonospora echinospora ATCC 15837 [NGNT]
89159
89087
-
Gln
CTG
[ENA]
¡û
>W1911676363
QGTA01000280
Actinomycetota
Micromonospora chalcea LB41 [QGTA]
6560
6632
+
Gln
CTG
[ENA]
¡û
>W1810072273
PEFG01000001
Actinomycetota
Micromonospora sp. CNZ299 [PEFG]
2714876
2714948
+
Gln
CTG
[ENA]
¡û
>W1810223895
POTX01000402
Actinomycetota
Micromonospora endophytica DSM 45430 [POTX]
2547
2619
+
Gln
CTG
[ENA]
¡û
>W1810224145
POUB01000402
Actinomycetota
Micromonospora deserti 13K206 [POUB]
3491
3563
+
Gln
CTG
[ENA]
¡û
>W1810392143
PYAB01000012
Actinomycetota
Micromonospora noduli Lupac 07 [PYAB]
152996
152924
-
Gln
CTG
[ENA]
¡û
>W1810392278
PYAD01000097
Actinomycetota
Micromonospora noduli ONO23 [PYAD]
11794
11722
-
Gln
CTG
[ENA]
¡û
>W1810392403
PYAG01000041
Actinomycetota
Micromonospora saelicesensis PSN13 [PYAG]
61500
61428
-
Gln
CTG
[ENA]
¡û
>W1810392502
PYAI01000185
Actinomycetota
Micromonospora saelicesensis PSN01 [PYAI]
1220
1292
+
Gln
CTG
[ENA]
¡û
>W1810392613
PYAK01000013
Actinomycetota
Micromonospora noduli GUI43 [PYAK]
135347
135419
+
Gln
CTG
[ENA]
¡û
>W1810608142
QGSW01000116
Actinomycetota
Micromonospora sp. S4605 [QGSW]
577
505
-
Gln
CTG
[ENA]
¡û
>W1810884451
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
3979503
3979575
+
Gln
CTG
[ENA]
¡û
>SRA1024175
SRR035084.266994
454 Sequencing (SRP001805)
117
191
+
Gln
CTG
[SRA]
>SRA1025099
SRR035084.484263
454 Sequencing (SRP001805)
294
220
-
Gln
CTG
[SRA]
>SRA1025266
SRR035084.534455
454 Sequencing (SRP001805)
326
400
+
Gln
CTG
[SRA]
>SRA1046169
SRR035093.249644
454 Sequencing (SRP001814)
245
319
+
Gln
CTG
[SRA]
>SRA1046811
SRR035093.390485
454 Sequencing (SRP001814)
292
366
+
Gln
CTG
[SRA]
>SRA1047067
SRR035093.447213
454 Sequencing (SRP001814)
410
484
+
Gln
CTG
[SRA]
>SRA1047511
SRR035093.561732
454 Sequencing (SRP001814)
98
172
+
Gln
CTG
[SRA]
>C11114536
CP002399
Actinomycetota
Micromonospora sp. L5 [CP002399]
1614941
1615013
+
Gln
CTG
[Ensembl]
¡û
>WENV041023
AACY022126563
Marine microbial communities from Global Ocean Sampling (GOS)
194
120
-
Gln
CTG
[ENA]
>C121007271
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
8113199
8113127
-
Gln
CTG
[Ensembl]
¡û
>C161109599
LT594323
Actinomycetota
Micromonospora auratinigra DSM 44815 [LT594323]
6410181
6410253
+
Gln
CTG
-
¡û
>WENV058052
AACY023315763
Marine microbial communities from Global Ocean Sampling (GOS)
1036
962
-
Gln
CTG
[ENA]
>W121055756
AIIH01000945
Actinomycetota
Salinispora pacifica CNT-133 [AIIH]
1174
1246
+
Gln
CTG
[ENA]
¡û
>W121055848
AIIJ01000445
Actinomycetota
Salinispora arenicola CNT-088 [AIIJ]
1262
1334
+
Gln
CTG
[ENA]
¡û
>W1610052609
BBIB01000245
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
612
538
-
Gln
CTG
[ENA]
¡û
>W1610054796
BBVA01000004
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
264157
264229
+
Gln
CTG
[ENA]
¡û
>C131015985
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
7906996
7906924
-
Gln
CTG
[Ensembl]
¡û
>W1710048987
BBIB01000245
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
612
538
-
Gln
CTG
[ENA]
¡û
>W1710051495
BBVA01000004
Actinomycetota
Micromonospora sp. NBRC 110037 [BBVA]
264157
264229
+
Gln
CTG
[ENA]
¡û
>W1710503009
FMCW01000001
Actinomycetota
Micromonospora haikouensis [FMCW]
269579
269653
+
Gln
CTG
[ENA]
¡û
>W1710504114
FMHT01000003
Actinomycetota
Micromonospora nigra [FMHT]
4479054
4479126
+
Gln
CTG
[ENA]
¡û
>W1710504210
FMHV01000002
Actinomycetota
Micromonospora rhizosphaerae [FMHV]
2274342
2274414
+
Gln
CTG
[ENA]
¡û
>W1710504589
FMIB01000002
Actinomycetota
Micromonospora chersina [FMIB]
2926621
2926549
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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