This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.405962 (125 seq.)
>W1710857567
LMAJ01000007
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
244202
244276
+
Thr
GGT
[ENA]
¡û
>W1710862240
LMEF01000031
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
276796
276870
+
Thr
GGT
[ENA]
¡û
>W1710866931
LMHW01000012
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
400931
401005
+
Thr
GGT
[ENA]
¡û
>W1710868436
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
350026
350100
+
Thr
GGT
[ENA]
¡û
>W1710868891
LMJL01000010
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
63733
63659
-
Thr
GGT
[ENA]
¡û
>W1710872477
LMMA01000002
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
80895
80969
+
Thr
GGT
[ENA]
¡û
>W1711088317
LSYT01000013
Bacteroidota
Flavobacterium chilense [LSYT]
88415
88489
+
Thr
GGT
[ENA]
¡û
>W1711138962
LVEO01000004
Bacteroidota
Flavobacterium glycines [LVEO]
159946
159872
-
Thr
GGT
[ENA]
¡û
>W1711139011
LVEP01000013
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
207603
207529
-
Thr
GGT
[ENA]
¡û
>W1711146832
LVJE01000038
Bacteroidota
Flavobacterium fryxellicola [LVJE]
48507
48433
-
Thr
GGT
[ENA]
¡û
>W1711513074
MLFK01000006
Bacteroidota
Flavobacterium johnsoniae [MLFK]
361610
361684
+
Thr
GGT
[ENA]
¡û
>W1711966571
NCWQ01000094
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
329
403
+
Thr
GGT
[ENA]
¡û
>C171053232
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
792589
792515
-
Thr
GGT
-
¡û
>C171066056
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
40664
40590
-
Thr
GGT
-
¡û
>C171067632
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
2611726
2611800
+
Thr
GGT
-
¡û
>W131225301
AUDL01000009
Bacteroidota
Flavobacterium denitrificans DSM 15936 [AUDL]
58912
58838
-
Thr
GGT
[ENA]
¡û
>W131237545
AUOT01000208
Bacteroidota
Flavobacterium sp. JGI 0001001-D01 [AUOT]
1542
1468
-
Thr
GGT
[ENA]
¡û
>W131225436
AUDO01000015
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
55361
55435
+
Thr
GGT
[ENA]
¡û
>W131229116
AUGN01000008
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
109636
109710
+
Thr
GGT
[ENA]
¡û
>C009407
CP000685
Bacteroidota
Flavobacterium johnsoniae UW101 UW101; ATCC 17061 [CP000685]
2238761
2238835
+
Thr
GGT
[Ensembl]
¡û
>W141023478
AJXL01000083
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
14144
14070
-
Thr
GGT
[ENA]
¡û
>WENV180391058
OBPM01003671
[OBPM] marine metagenome; ENVO:00002010
1451
1379
-
Thr
GGT
[ENA]
¢þ
>WENV180593881
OCOY01001876
[OCOY] marine metagenome; ENVO:00002010
154
226
+
Thr
GGT
[ENA]
¢þ
>WENV181384751
OFRI01008379
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1342
1270
-
Thr
GGT
[ENA]
¢þ
>WENV181838549
OGVN01003167
[OGVN] freshwater metagenome; freshwater
689
617
-
Thr
GGT
[ENA]
¢þ
>W141289788
JARP01000007
Bacteroidota
Flavobacterium sp. KJJ [JARP]
361361
361435
+
Thr
GGT
[ENA]
¡û
>WENV183726807
PJTO01000188
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
148
220
+
Thr
GGT
[ENA]
¢þ
>WENV183729063
PJTQ01003662
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
409
337
-
Thr
GGT
[ENA]
¢þ
>WENV183730167
PJTR01001736
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1904
1976
+
Thr
GGT
[ENA]
¢þ
>WENV183730174
PJTR01002041
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1898
1970
+
Thr
GGT
[ENA]
¢þ
>WENV183731025
PJTS01004167
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2655
2727
+
Thr
GGT
[ENA]
¢þ
>WENV183731067
PJTS01006616
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1571
1643
+
Thr
GGT
[ENA]
¢þ
>WENV183731129
PJTS01011763
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
5
77
+
Thr
GGT
[ENA]
¢þ
>WENV183731645
PJTT01000075
[PJTT] soil metagenome; Soil (2) enriched on wood chips
3647
3575
-
Thr
GGT
[ENA]
¢þ
>WENV183734851
PJUA01000054
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
77901
77973
+
Thr
GGT
[ENA]
¢þ
>WENV183735789
PJUB01002575
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
519
591
+
Thr
GGT
[ENA]
¢þ
>WENV183736140
PJUC01000046
[PJUC] soil metagenome; Soil enriched on filter paper
77901
77973
+
Thr
GGT
[ENA]
¢þ
>WENV170559527
CXWL01127526
[CXWL] groundwater metagenome; biofilm material
1769
1843
+
Thr
GGT
[ENA]
¢þ
>WENV170559634
CXWL01134340
[CXWL] groundwater metagenome; biofilm material
1518
1592
+
Thr
GGT
[ENA]
¢þ
>C181047513
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
38304
38232
-
Thr
GGT
-
¡û
>W09105484
AAPM01000007
Bacteroidota
Flavobacterium johnsoniae UW101 [AAPM]
66233
66159
-
Thr
GGT
[ENA]
¡û
>C181176621
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
2278473
2278545
+
Thr
GGT
-
¡û
>C181190988
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
2073298
2073370
+
Thr
GGT
-
¡û
>C191025446
CP023642
Bacteroidota
Flavobacterium anhuiense M168 [CP023642]
1058907
1058979
+
Thr
GGT
-
¡û
>C191099780
CP033068
Bacteroidota
Flavobacterium sp. 140616W15 [CP033068]
196035
196107
+
Thr
GGT
-
¡û
>W141726688
JNCA01000017
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
64925
64999
+
Thr
GGT
[ENA]
¡û
>W141809362
JPRL01000001
Bacteroidota
Flavobacterium reichenbachii [JPRL]
2991972
2991898
-
Thr
GGT
[ENA]
¡û
>W141809392
JPRM01000005
Bacteroidota
Flavobacterium hydatis [JPRM]
14838
14764
-
Thr
GGT
[ENA]
¡û
>W141816575
JQJY01000009
Bacteroidota
Flavobacterium sp. ASV13 Fl [JQJY]
318917
318991
+
Thr
GGT
[ENA]
¡û
>W141820211
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
1868788
1868862
+
Thr
GGT
[ENA]
¡û
>W1910183315
BJNP01000039
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
38919
38847
-
Thr
GGT
[ENA]
¡û
>W1910547018
FZNL01000009
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
114086
114158
+
Thr
GGT
[ENA]
¡û
>W1910577911
JUIV01000003
Bacteroidota
Flavobacterium anhuiense RCM74 [JUIV]
63433
63361
-
Thr
GGT
[ENA]
¡û
>W1910728185
MGWJ01000035
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
5478
5406
-
Thr
GGT
[ENA]
¡û
>W1910792763
MRCM01000004
Bacteroidota
Flavobacterium sp. ACN2 [MRCM]
294780
294852
+
Thr
GGT
[ENA]
¡û
>W1910793017
MRCQ01000016
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
52823
52895
+
Thr
GGT
[ENA]
¡û
>W1910805364
MTQF01000008
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
67331
67259
-
Thr
GGT
[ENA]
¡û
>W1910809059
MUGV01000031
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
68169
68097
-
Thr
GGT
[ENA]
¡û
>W1910809119
MUGW01000074
Bacteroidota
Flavobacterium hercynium DSM 18292 [MUGW]
13478
13406
-
Thr
GGT
[ENA]
¡û
>W1910809164
MUGX01000033
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
24654
24582
-
Thr
GGT
[ENA]
¡û
>W1910809222
MUGY01000032
Bacteroidota
Flavobacterium hydatis ATCC 29551 [MUGY]
103103
103175
+
Thr
GGT
[ENA]
¡û
>W1910809269
MUGZ01000012
Bacteroidota
Flavobacterium johnsoniae UW101 ATCC 17061 [MUGZ]
65315
65243
-
Thr
GGT
[ENA]
¡û
>W1910809308
MUHA01000010
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
30743
30671
-
Thr
GGT
[ENA]
¡û
>W1910809371
MUHB01000019
Bacteroidota
Flavobacterium pectinovorum ATCC 19366 [MUHB]
54247
54319
+
Thr
GGT
[ENA]
¡û
>W1910809469
MUHD01000034
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
108325
108397
+
Thr
GGT
[ENA]
¡û
>W1910809571
MUHF01000030
Bacteroidota
Flavobacterium reichenbachii DSM 21791 [MUHF]
57634
57706
+
Thr
GGT
[ENA]
¡û
>W1911180828
NQOT01000392
Bacteroidota
Flavobacterium sp. IR1 [NQOT]
53763
53691
-
Thr
GGT
[ENA]
¡û
>W1911218544
NRQU01000026
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
61462
61390
-
Thr
GGT
[ENA]
¡û
>W1911218599
NRQV01000018
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
30783
30711
-
Thr
GGT
[ENA]
¡û
>W1911747571
QWDM01000017
Bacteroidota
Flavobacterium cupreum CCM 8825 [QWDM]
57657
57585
-
Thr
GGT
[ENA]
¡û
>W1911747617
QWDN01000012
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
79109
79181
+
Thr
GGT
[ENA]
¡û
>W1810072057
PEFC01000002
Bacteroidota
Flavobacterium sp. 2 [PEFC]
899061
898989
-
Thr
GGT
[ENA]
¡û
>W1810156553
PJBJ01000030
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
166726
166654
-
Thr
GGT
[ENA]
¡û
>W1810530617
QCWV01000018
Bacteroidota
Flavobacterium sp. WLB [QCWV]
65398
65326
-
Thr
GGT
[ENA]
¡û
>W1810580553
QETH01000010
Bacteroidota
Flavobacterium sp. HTF [QETH]
26690
26618
-
Thr
GGT
[ENA]
¡û
>W1810657089
QJGZ01000028
Bacteroidota
Flavobacterium sharifuzzamanii A7.6 [QJGZ]
90
162
+
Thr
GGT
[ENA]
¡û
>W1810669697
QJRH01000062
Bacteroidota
Flavobacterium tistrianum GB 56.1 [QJRH]
64539
64467
-
Thr
GGT
[ENA]
¡û
>W1810669733
QJRI01000159
Bacteroidota
Flavobacterium nitrogenifigens NXU-44 [QJRI]
78
150
+
Thr
GGT
[ENA]
¡û
>W1810669781
QJRJ01000062
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
81
153
+
Thr
GGT
[ENA]
¡û
>W1810672686
QJTO01000025
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
38376
38448
+
Thr
GGT
[ENA]
¡û
>W1810676079
QKLS01000025
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
38376
38448
+
Thr
GGT
[ENA]
¡û
>W1810787331
QRDQ01000011
Bacteroidota
Flavobacterium cutihirudinis DSM 25795 [QRDQ]
301238
301310
+
Thr
GGT
[ENA]
¡û
>W1810861156
QTTR01000001
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
61431
61359
-
Thr
GGT
[ENA]
¡û
>W1511311996
JPRK01000008
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
107808
107734
-
Thr
GGT
[ENA]
¡û
>W1511390916
JSYM01000001
Bacteroidota
Flavobacterium sp. AED [JSYM]
1882137
1882211
+
Thr
GGT
[ENA]
¡û
>W1511391014
JSYO01000014
Bacteroidota
Flavobacterium sp. JRM [JSYO]
87880
87954
+
Thr
GGT
[ENA]
¡û
>W1511391066
JSYP01000001
Bacteroidota
Flavobacterium sp. KMS [JSYP]
381899
381825
-
Thr
GGT
[ENA]
¡û
>W1511508971
JXQR01000014
Bacteroidota
Flavobacterium sp. MEB061 [JXQR]
347749
347823
+
Thr
GGT
[ENA]
¡û
>W121086518
AKJZ01000026
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
19480
19406
-
Thr
GGT
[ENA]
¡û
>W121103531
AKZQ01000030
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
63908
63834
-
Thr
GGT
[ENA]
¡û
>W1610534874
JRLF01000010
Bacteroidota
Flavobacterium aquidurense [JRLF]
61935
61861
-
Thr
GGT
[ENA]
¡û
>W1610719948
LMAJ01000007
Bacteroidota
Flavobacteriaceae bacterium CRH [LMAJ]
244202
244276
+
Thr
GGT
[ENA]
¡û
>W1610724586
LMEF01000031
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
276796
276870
+
Thr
GGT
[ENA]
¡û
>W1610729277
LMHW01000012
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
400931
401005
+
Thr
GGT
[ENA]
¡û
>W1610730782
LMJB01000008
Bacteroidota
Flavobacterium sp. Root901 [LMJB]
350026
350100
+
Thr
GGT
[ENA]
¡û
>W1610731237
LMJL01000010
Bacteroidota
Flavobacterium sp. Root935 [LMJL]
63733
63659
-
Thr
GGT
[ENA]
¡û
>W1610734823
LMMA01000002
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
80895
80969
+
Thr
GGT
[ENA]
¡û
>W1610922856
LSYT01000013
Bacteroidota
Flavobacterium chilense [LSYT]
88415
88489
+
Thr
GGT
[ENA]
¡û
>W1610949970
LVEO01000004
Bacteroidota
Flavobacterium glycines [LVEO]
159946
159872
-
Thr
GGT
[ENA]
¡û
>W1610950019
LVEP01000013
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
207603
207529
-
Thr
GGT
[ENA]
¡û
>W1610957729
LVJE01000038
Bacteroidota
Flavobacterium fryxellicola [LVJE]
48507
48433
-
Thr
GGT
[ENA]
¡û
>W1710507252
FMVC01000008
Bacteroidota
Flavobacterium anhuiense [FMVC]
198364
198438
+
Thr
GGT
[ENA]
¡û
>W1710517119
FNDB01000022
Bacteroidota
Flavobacterium omnivorum [FNDB]
24190
24116
-
Thr
GGT
[ENA]
¡û
>W1710519191
FNEO01000001
Bacteroidota
Flavobacterium glycines [FNEO]
1736041
1736115
+
Thr
GGT
[ENA]
¡û
>W1710531671
FNPS01000004
Bacteroidota
Flavobacterium aquidurense [FNPS]
320628
320702
+
Thr
GGT
[ENA]
¡û
>W1710533460
FNRD01000001
Bacteroidota
Flavobacterium gillisiae [FNRD]
552333
552407
+
Thr
GGT
[ENA]
¡û
>W1710539679
FNVP01000005
Bacteroidota
Flavobacterium urumqiense [FNVP]
104890
104964
+
Thr
GGT
[ENA]
¡û
>W1710541057
FNYA01000002
Bacteroidota
Flavobacterium terrigena [FNYA]
209573
209499
-
Thr
GGT
[ENA]
¡û
>W1710548032
FODK01000010
Bacteroidota
Flavobacterium sp. fv08 [FODK]
70903
70829
-
Thr
GGT
[ENA]
¡û
>W1710548145
FODN01000001
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
171136
171062
-
Thr
GGT
[ENA]
¡û
>W1710551324
FOFZ01000002
Bacteroidota
Flavobacterium frigoris [FOFZ]
118736
118662
-
Thr
GGT
[ENA]
¡û
>W1710559000
FOMH01000004
Bacteroidota
Flavobacterium phragmitis [FOMH]
346546
346620
+
Thr
GGT
[ENA]
¡û
>W1710560746
FONQ01000001
Bacteroidota
Flavobacterium xueshanense [FONQ]
31388
31314
-
Thr
GGT
[ENA]
¡û
>W1710585129
FQWC01000012
Bacteroidota
Flavobacterium defluvii [FQWC]
58847
58921
+
Thr
GGT
[ENA]
¡û
>W1710585355
FQWH01000013
Bacteroidota
Flavobacterium johnsoniae [FQWH]
61429
61355
-
Thr
GGT
[ENA]
¡û
>W1710586084
FQWW01000012
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
67992
68066
+
Thr
GGT
[ENA]
¡û
>W1710589901
FRAO01000001
Bacteroidota
Flavobacterium johnsoniae [FRAO]
1564465
1564539
+
Thr
GGT
[ENA]
¡û
>W1710591530
FRBT01000011
Bacteroidota
Flavobacterium chilense [FRBT]
94392
94466
+
Thr
GGT
[ENA]
¡û
>W1710591567
FRBU01000034
Bacteroidota
Flavobacterium xanthum [FRBU]
20528
20602
+
Thr
GGT
[ENA]
¡û
>W1710591706
FRBX01000005
Bacteroidota
Flavobacterium pectinovorum [FRBX]
385156
385230
+
Thr
GGT
[ENA]
¡û
>W1710591936
FRCC01000001
Bacteroidota
Flavobacterium flevense [FRCC]
195211
195137
-
Thr
GGT
[ENA]
¡û
>W1710592409
FRCL01000001
Bacteroidota
Flavobacterium xinjiangense [FRCL]
29841
29767
-
Thr
GGT
[ENA]
¡û
>W1710593403
FRDK01000005
Bacteroidota
Flavobacterium fryxellicola [FRDK]
48583
48509
-
Thr
GGT
[ENA]
¡û
>W1710637110
JRLF01000010
Bacteroidota
Flavobacterium aquidurense [JRLF]
61935
61861
-
Thr
GGT
[ENA]
¡û
>W1710756335
LIAC01000010
Bacteroidota
Flavobacterium sp. NLM [LIAC]
75157
75083
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK