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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406233 (105 seq.)
>W1711186427
LWOF01000027
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
83874
83800
-
Val
CAC
[ENA]
¡û
>W1711187069
LWOT01000045
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
1170
1244
+
Val
CAC
[ENA]
¡û
>W1712077679
NGUZ01000001
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
373327
373253
-
Val
CAC
[ENA]
¡û
>C171001924
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
1514658
1514732
+
Val
CAC
-
¡û
>WENV180228659
OBCD01003681
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
374
302
-
Val
CAC
[ENA]
¢þ
>WENV180405197
OBSE01029337
[OBSE] human gut metagenome; ENVO:feces
168
94
-
Val
CAC
[ENA]
¢þ
>WENV180503322
OCAM01012461
[OCAM] human gut metagenome; faeces
655
727
+
Val
CAC
[ENA]
¢þ
>WENV180554415
OCJN01000539
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
438
512
+
Val
CAC
[ENA]
¢þ
>WENV180557053
OCJU01007439
[OCJU] human gut metagenome; Infant 2 DOL 12 skin
67
139
+
Val
CAC
[ENA]
¢þ
>WENV180711567
ODFP01002575
[ODFP] human metagenome; G_DNA_Anterior nares
315
241
-
Val
CAC
[ENA]
¢þ
>WENV180711707
ODFQ01002264
[ODFQ] human metagenome; G_DNA_Anterior nares
546
472
-
Val
CAC
[ENA]
¢þ
>WENV180766205
ODIE01000006
[ODIE] human metagenome; G_DNA_Anterior nares
7026
7100
+
Val
CAC
[ENA]
¢þ
>WENV180836523
ODKF01000334
[ODKF] human metagenome; G_DNA_Anterior nares
748
822
+
Val
CAC
[ENA]
¢þ
>WENV180838969
ODKH01005634
[ODKH] human metagenome; G_DNA_Anterior nares
343
269
-
Val
CAC
[ENA]
¢þ
>WENV180844779
ODKO01003971
[ODKO] human metagenome; G_DNA_Anterior nares
57
131
+
Val
CAC
[ENA]
¢þ
>WENV180878855
ODLY01000359
[ODLY] human metagenome; G_DNA_Anterior nares
755
829
+
Val
CAC
[ENA]
¢þ
>WENV180912926
ODSQ01001016
[ODSQ] human metagenome; G_DNA_Anterior nares
147
73
-
Val
CAC
[ENA]
¢þ
>WENV180913484
ODSU01005370
[ODSU] human metagenome; G_DNA_Anterior nares
588
514
-
Val
CAC
[ENA]
¢þ
>WENV180916296
ODTC01002089
[ODTC] human metagenome; G_DNA_Anterior nares
509
435
-
Val
CAC
[ENA]
¢þ
>WENV180917994
ODTF01000013
[ODTF] human metagenome; G_DNA_Anterior nares
97785
97859
+
Val
CAC
[ENA]
¢þ
>WENV180937572
ODTW01015468
[ODTW] human metagenome; G_DNA_Anterior nares
264
190
-
Val
CAC
[ENA]
¢þ
>WENV180966721
ODUR01001010
[ODUR] human metagenome; G_DNA_Anterior nares
102
176
+
Val
CAC
[ENA]
¢þ
>WENV180967027
ODUS01006182
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
296
224
-
Val
CAC
[ENA]
¢þ
>WENV180972500
ODUV01003051
[ODUV] human metagenome; G_DNA_Anterior nares
550
624
+
Val
CAC
[ENA]
¢þ
>WENV180984697
ODVI01003175
[ODVI] human metagenome; G_DNA_Anterior nares
191
117
-
Val
CAC
[ENA]
¢þ
>WENV181000287
ODVU01002320
[ODVU] human metagenome; G_DNA_Anterior nares
729
655
-
Val
CAC
[ENA]
¢þ
>WENV181010183
ODWG01005109
[ODWG] human metagenome; G_DNA_Anterior nares
92
18
-
Val
CAC
[ENA]
¢þ
>WENV181025138
ODWY01019889
[ODWY] human metagenome; G_DNA_Anterior nares
120
194
+
Val
CAC
[ENA]
¢þ
>WENV181040345
ODXR01000067
[ODXR] human metagenome; G_DNA_Anterior nares
180
254
+
Val
CAC
[ENA]
¢þ
>WENV181119529
OEFI01000092
[OEFI] human metagenome; G_DNA_Anterior nares
755
829
+
Val
CAC
[ENA]
¢þ
>WENV181131409
OEGC01000042
[OEGC] human metagenome; G_DNA_Anterior nares
755
829
+
Val
CAC
[ENA]
¢þ
>WENV181131700
OEGD01004713
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
1078
1152
+
Val
CAC
[ENA]
¢þ
>WENV181212259
OFBN01002270
[OFBN] metagenome; hydrothermal vent
424
496
+
Val
CAC
[ENA]
¢þ
>WENV181212336
OFBO01001694
[OFBO] metagenome; hydrothermal vent
488
416
-
Val
CAC
[ENA]
¢þ
>WENV181212363
OFBP01000103
[OFBP] metagenome; hydrothermal vent
322
394
+
Val
CAC
[ENA]
¢þ
>WENV181212478
OFBQ01000649
[OFBQ] metagenome; hydrothermal vent
299
371
+
Val
CAC
[ENA]
¢þ
>WENV181212648
OFBS01001830
[OFBS] metagenome; hydrothermal vent
301
373
+
Val
CAC
[ENA]
¢þ
>WENV181212727
OFBT01001290
[OFBT] metagenome; hydrothermal vent
655
583
-
Val
CAC
[ENA]
¢þ
>W141154884
AXLN01000007
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
13629
13555
-
Val
CAC
[ENA]
¡û
>W141154918
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
233983
234057
+
Val
CAC
[ENA]
¡û
>W141154978
AXLP01000003
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
236058
236132
+
Val
CAC
[ENA]
¡û
>W141155104
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
230712
230786
+
Val
CAC
[ENA]
¡û
>W141155186
AXLT01000006
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
281592
281518
-
Val
CAC
[ENA]
¡û
>W141155197
AXLU01000001
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
226689
226763
+
Val
CAC
[ENA]
¡û
>W141155295
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
281496
281422
-
Val
CAC
[ENA]
¡û
>W141155329
AXLW01000007
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
222941
223015
+
Val
CAC
[ENA]
¡û
>W141155365
AXLX01000007
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
63497
63423
-
Val
CAC
[ENA]
¡û
>W141155423
AXLY01000006
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
151097
151171
+
Val
CAC
[ENA]
¡û
>W141155448
AXLZ01000001
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
225244
225318
+
Val
CAC
[ENA]
¡û
>W141155539
AXMA01000008
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
320173
320099
-
Val
CAC
[ENA]
¡û
>W141155567
AXMB01000002
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
281591
281517
-
Val
CAC
[ENA]
¡û
>W141155618
AXMC01000004
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
61706
61632
-
Val
CAC
[ENA]
¡û
>WENV182629031
OJKR01001573
[OJKR] metagenome; surface
3220
3292
+
Val
CAC
[ENA]
¢þ
>WENV182629358
OJKS01000129
[OJKS] metagenome; surface
297
371
+
Val
CAC
[ENA]
¢þ
>WENV182629594
OJKT01002653
[OJKT] metagenome; surface
294
368
+
Val
CAC
[ENA]
¢þ
>WENV182629840
OJKV01000071
[OJKV] metagenome; surface
10640
10714
+
Val
CAC
[ENA]
¢þ
>WENV182636540
OJKZ01017140
[OJKZ] metagenome; surface
296
368
+
Val
CAC
[ENA]
¢þ
>WENV182640800
OJLE01000002
[OJLE] metagenome; surface
299
373
+
Val
CAC
[ENA]
¢þ
>WENV182642225
OJLL01006874
[OJLL] metagenome; surface
851
779
-
Val
CAC
[ENA]
¢þ
>WENV182642386
OJLM01003828
[OJLM] metagenome; surface
385
311
-
Val
CAC
[ENA]
¢þ
>WENV182642764
OJLP01000297
[OJLP] metagenome; surface
532
604
+
Val
CAC
[ENA]
¢þ
>WENV182643001
OJLS01000058
[OJLS] metagenome; surface
27582
27510
-
Val
CAC
[ENA]
¢þ
>WENV182644023
OJLW01005527
[OJLW] metagenome; surface
2828
2756
-
Val
CAC
[ENA]
¢þ
>WENV182644779
OJLY01000350
[OJLY] metagenome; surface
299
371
+
Val
CAC
[ENA]
¢þ
>WENV182646224
OJMA01000321
[OJMA] metagenome; surface
10549
10475
-
Val
CAC
[ENA]
¢þ
>WENV182646587
OJMC01000009
[OJMC] metagenome; surface
67700
67774
+
Val
CAC
[ENA]
¢þ
>WENV182646652
OJMC01000423
[OJMC] metagenome; surface
170
244
+
Val
CAC
[ENA]
¢þ
>WENV182671815
OJNM01003715
[OJNM] metagenome; surface
3165
3091
-
Val
CAC
[ENA]
¢þ
>WENV182803944
OJUR01000457
[OJUR] human gut metagenome; human gut
2252
2326
+
Val
CAC
[ENA]
¢þ
>WENV182811944
OJXO01000007
[OJXO] human gut metagenome; human gut
853
925
+
Val
CAC
[ENA]
¢þ
>WENV182812175
OJXQ01001135
[OJXQ] human gut metagenome; human gut
299
371
+
Val
CAC
[ENA]
¢þ
>WENV182828893
OKDK01000690
[OKDK] human gut metagenome; human gut
957
885
-
Val
CAC
[ENA]
¢þ
>WENV182829137
OKDM01000144
[OKDM] human gut metagenome; human gut
322
394
+
Val
CAC
[ENA]
¢þ
>WENV182830990
OKEC01000927
[OKEC] human gut metagenome; human gut
2553
2481
-
Val
CAC
[ENA]
¢þ
>WENV182833950
OKEX01000033
[OKEX] human gut metagenome; human gut
12471
12399
-
Val
CAC
[ENA]
¢þ
>WENV182834017
OKEY01000158
[OKEY] human gut metagenome; human gut
4499
4427
-
Val
CAC
[ENA]
¢þ
>WENV182855579
OKNB01002132
[OKNB] human gut metagenome; human gut
300
372
+
Val
CAC
[ENA]
¢þ
>WENV183090806
OLKE01036427
[OLKE] metagenome; surface
291
219
-
Val
CAC
[ENA]
¢þ
>WENV183724052
PEHZ01022166
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
341
415
+
Val
CAC
[ENA]
¢þ
>W09113466
ABYQ01000258
Actinomycetota
Corynebacterium pseudogenitalium ATCC 33035 [ABYQ]
24131
24057
-
Val
CAC
[ENA]
¡û
>W09122418
ACGD01000044
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
272585
272511
-
Val
CAC
[ENA]
¡û
>W09135430
ACVP01000023
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
134168
134242
+
Val
CAC
[ENA]
¡û
>C181108824
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
794027
794101
+
Val
CAC
-
¡û
>C191210950
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1392949
1393023
+
Val
CAC
-
¡û
>W1910182618
BJNB01000002
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
90881
90955
+
Val
CAC
[ENA]
¡û
>W1911204429
NRIM01000016
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
32234
32160
-
Val
CAC
[ENA]
¡û
>W1911204452
NRIM01000036
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
629
703
+
Val
CAC
[ENA]
¡û
>W1911204550
NRIO01000014
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
37005
36931
-
Val
CAC
[ENA]
¡û
>W1911498451
OCTS01000005
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
83184
83258
+
Val
CAC
[ENA]
¡û
>W1911770940
QXJK01000003
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
214336
214264
-
Val
CAC
[ENA]
¡û
>W1810118398
PHQP01000047
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
5194
5266
+
Val
CAC
[ENA]
¡û
>W1810623588
QHCV01000053
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
3214
3286
+
Val
CAC
[ENA]
¡û
>C151017698
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
1372704
1372632
-
Val
CAC
[Ensembl]
¡û
>W10113791
ADGN01000052
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
403
477
+
Val
CAC
[ENA]
¡û
>W10127204
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
14185
14259
+
Val
CAC
[ENA]
¡û
>C11106284
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
1409621
1409547
-
Val
CAC
[Ensembl]
¡û
>W11117127
ADGN01000052
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
403
477
+
Val
CAC
[ENA]
¡û
>W1511357087
JRVJ01000001
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
219799
219873
+
Val
CAC
[ENA]
¡û
>W1511439799
JUOH01000090
Actinomycetota
Corynebacterium aurimucosum 911_CAUR [JUOH]
138107
138033
-
Val
CAC
[ENA]
¡û
>W1511443065
JUSN01000044
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
129508
129434
-
Val
CAC
[ENA]
¡û
>W1511448423
JUZU01000026
Actinomycetota
Corynebacterium aurimucosum 620_CAUR [JUZU]
298
372
+
Val
CAC
[ENA]
¡û
>W1511471093
JVXO01000034
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
284380
284306
-
Val
CAC
[ENA]
¡û
>W1511472678
JVZP01000123
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
278
352
+
Val
CAC
[ENA]
¡û
>W1511473104
JWAB01000650
Actinomycetota
Corynebacterium aurimucosum 118_CAUR [JWAB]
143680
143606
-
Val
CAC
[ENA]
¡û
>W11134692
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
14185
14259
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK