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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406320 (51 seq.)
>W1711135708
LUZJ01000133
Bacteroidota
Bacteroidales bacterium Bact_18 [LUZJ]
8883
8811
-
Glu
TTC
[ENA]
¡û
>W1711167081
LVWA01000005
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
1005454
1005380
-
Glu
TTC
[ENA]
¡û
>W1711167082
LVWA01000005
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
970063
969991
-
Glu
TTC
[ENA]
¡û
>W1711167101
LVWA01000012
Bacteroidota
Pontibacter flavimaris S10-8 [LVWA]
175579
175653
+
Glu
TTC
[ENA]
¡û
>W1711392221
MENJ01000024
Bacteroidota
Bacteroidetes bacterium GWA2_42_15 [MENJ]
136711
136639
-
Glu
TTC
[ENA]
¡û
>W1711392925
MEOB01000037
Bacteroidota
Bacteroidetes bacterium GWE2_42_39 [MEOB]
25584
25656
+
Glu
TTC
[ENA]
¡û
>W1711393383
MEOO01000027
Bacteroidota
Bacteroidetes bacterium GWF2_42_66 [MEOO]
64915
64843
-
Glu
TTC
[ENA]
¡û
>WENV180014026
FPIC01031883
[FPIC] soil metagenome; Soil
87
13
-
Glu
TTC
[ENA]
¢þ
>WENV180323426
OBKR01030987
[OBKR] human gut metagenome; feces
992
1066
+
Glu
TTC
[ENA]
¢þ
>WENV180543332
OCHT01110492
[OCHT] human gut metagenome; human gut
45
119
+
Glu
TTC
[ENA]
¢þ
>WENV180609631
OCPV01006216
[OCPV] human gut metagenome; human gut
2725
2799
+
Glu
TTC
[ENA]
¢þ
>WENV180886816
ODME01215866
[ODME] human metagenome; G_DNA_Stool
82
154
+
Glu
TTC
[ENA]
¢þ
>WENV180894519
ODMR01116187
[ODMR] human metagenome; G_DNA_Stool
329
403
+
Glu
TTC
[ENA]
¢þ
>WENV180956502
ODUK01001563
[ODUK] human metagenome; G_DNA_Stool
14978
15050
+
Glu
TTC
[ENA]
¢þ
>WENV181029001
ODXE01063585
[ODXE] human metagenome; G_DNA_Stool
87
15
-
Glu
TTC
[ENA]
¢þ
>WENV181093692
OEBW01007194
[OEBW] human metagenome; G_DNA_Stool
2329
2401
+
Glu
TTC
[ENA]
¢þ
>WENV181452039
OGDY01059686
[OGDY] metagenome; Human gut stool
230
158
-
Glu
TTC
[ENA]
¢þ
>WENV181532090
OGHO01031482
[OGHO] metagenome; Human gut stool
983
1055
+
Glu
TTC
[ENA]
¢þ
>W141152181
AXBP01000011
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
534304
534230
-
Glu
TTC
[ENA]
¡û
>W141152192
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
1584
1658
+
Glu
TTC
[ENA]
¡û
>W141152193
AXBP01000015
Bacteroidota
Pontibacter actiniarum DSM 19842 [AXBP]
40161
40235
+
Glu
TTC
[ENA]
¡û
>WENV182655237
OJMI01024535
[OJMI] human gut metagenome; feces
716
790
+
Glu
TTC
[ENA]
¢þ
>WENV182969491
OKXB01031333
[OKXB] human gut metagenome; human gut
237
311
+
Glu
TTC
[ENA]
¢þ
>WENV170050163
CDZB01016623
[CDZB] gut metagenome; human stools
235
309
+
Glu
TTC
[ENA]
¢þ
>WENV170063463
CDZK01016028
[CDZK] gut metagenome; human stools
172
98
-
Glu
TTC
[ENA]
¢þ
>WENV170101677
CEAR01041499
[CEAR] gut metagenome; human stools
713
639
-
Glu
TTC
[ENA]
¢þ
>WENV170109316
CECA01072450
[CECA] gut metagenome; human stools
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV170638160
JFBN01432819
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1243
1169
-
Glu
TTC
[ENA]
¢þ
>WENV170642674
JFJP01043287
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1389
1463
+
Glu
TTC
[ENA]
¢þ
>C191018687
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1888363
1888435
+
Glu
TTC
-
¡û
>C191018688
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
1926940
1927012
+
Glu
TTC
-
¡û
>C191018724
CP021235
Bacteroidota
Pontibacter actiniarum DSM 19842 [CP021235]
883825
883753
-
Glu
TTC
-
¡û
>W1911749355
QWGE01000002
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
823225
823297
+
Glu
TTC
[ENA]
¡û
>W1911749356
QWGE01000002
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
847530
847604
+
Glu
TTC
[ENA]
¡û
>W1911749375
QWGE01000005
Bacteroidota
Pontibacter oryzae KIRAN [QWGE]
53023
53095
+
Glu
TTC
[ENA]
¡û
>W1810400062
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
6884409
6884337
-
Glu
TTC
[ENA]
¡û
>W1810400084
PYFT01000001
Bacteroidota
Adhaeribacter arboris HMF7605 [PYFT]
902059
901987
-
Glu
TTC
[ENA]
¡û
>W1810483265
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
2903345
2903417
+
Glu
TTC
[ENA]
¡û
>W1810483268
QASA01000001
Bacteroidota
Adhaeribacter pallidiroseus HMF7616 [QASA]
3671379
3671451
+
Glu
TTC
[ENA]
¡û
>W1810503701
QBKI01000003
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
8817
8743
-
Glu
TTC
[ENA]
¡û
>W1810503722
QBKI01000012
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
25151
25225
+
Glu
TTC
[ENA]
¡û
>W1810503724
QBKI01000015
Bacteroidota
Pontibacter mucosus DSM 100162 [QBKI]
30408
30334
-
Glu
TTC
[ENA]
¡û
>W1810789482
QRGR01000004
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
291177
291249
+
Glu
TTC
[ENA]
¡û
>W1810789512
QRGR01000033
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
28938
28866
-
Glu
TTC
[ENA]
¡û
>C151055999
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4589346
4589418
+
Glu
TTC
[Ensembl]
¡û
>C151056000
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
4737471
4737543
+
Glu
TTC
[Ensembl]
¡û
>C151056007
CP009621
Bacteroidota
Pontibacter korlensis X14-1T [CP009621]
3429069
3428997
-
Glu
TTC
[Ensembl]
¡û
>W1610946828
LUZJ01000133
Bacteroidota
Bacteroidales bacterium Bact_18 [LUZJ]
8883
8811
-
Glu
TTC
[ENA]
¡û
>W1710562170
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
97727
97801
+
Glu
TTC
[ENA]
¡û
>W1710562171
FOOT01000006
Bacteroidota
Pontibacter chinhatensis [FOOT]
141332
141404
+
Glu
TTC
[ENA]
¡û
>W1710562178
FOOT01000013
Bacteroidota
Pontibacter chinhatensis [FOOT]
33247
33321
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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