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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406378 (87 seq.)
>W1711581264
MNTW01000006
Thermodesulfobacteriota
Desulfovibrio piger [MNTW]
96839
96765
-
Gly
CCC
[ENA]
¡û
>C171129803
LT630450
Thermodesulfobacteriota
Desulfovibrio piger [LT630450]
1189963
1190037
+
Gly
CCC
-
¡û
>W131215426
ATUZ01000016
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
27829
27755
-
Gly
CCC
[ENA]
¡û
>WENV180205485
OBAH01028939
[OBAH] human gut metagenome; human gut
53
127
+
Gly
CCC
[ENA]
¢þ
>WENV180223546
OBBG01052653
[OBBG] human gut metagenome; human gut
186
112
-
Gly
CCC
[ENA]
¢þ
>WENV180223740
OBBH01011077
[OBBH] human gut metagenome; human gut
125
199
+
Gly
CCC
[ENA]
¢þ
>WENV180243793
OBDJ01108579
[OBDJ] human gut metagenome; human gut
186
112
-
Gly
CCC
[ENA]
¢þ
>WENV180274793
OBHE01046894
[OBHE] human gut metagenome; human gut
181
255
+
Gly
CCC
[ENA]
¢þ
>WENV180276726
OBHU01093638
[OBHU] human gut metagenome; feces
234
160
-
Gly
CCC
[ENA]
¢þ
>WENV180323702
OBKR01059198
[OBKR] human gut metagenome; feces
75
149
+
Gly
CCC
[ENA]
¢þ
>WENV180330632
OBKV01133149
[OBKV] human gut metagenome; human gut
231
157
-
Gly
CCC
[ENA]
¢þ
>WENV180540082
OCHP01323111
[OCHP] human gut metagenome; human gut
148
74
-
Gly
CCC
[ENA]
¢þ
>WENV180547589
OCIU01059268
[OCIU] human gut metagenome; human gut
468
542
+
Gly
CCC
[ENA]
¢þ
>WENV180711212
ODFM01086651
[ODFM] human metagenome; G_DNA_Stool
329
255
-
Gly
CCC
[ENA]
¢þ
>WENV180762574
ODHZ01194814
[ODHZ] human metagenome; G_DNA_Stool
286
212
-
Gly
CCC
[ENA]
¢þ
>WENV180957671
ODUK01113613
[ODUK] human metagenome; G_DNA_Stool
313
239
-
Gly
CCC
[ENA]
¢þ
>WENV180962438
ODUN01011528
[ODUN] human metagenome; G_DNA_Stool
2049
1975
-
Gly
CCC
[ENA]
¢þ
>WENV181204268
OERY01004227
[OERY] metagenome; Caecal content
1181
1107
-
Gly
CCC
[ENA]
¢þ
>WENV181244320
OFFH01061856
[OFFH] mouse gut metagenome; faeces
363
289
-
Gly
CCC
[ENA]
¢þ
>WENV181247413
OFFK01024241
[OFFK] mouse gut metagenome; faeces
1754
1680
-
Gly
CCC
[ENA]
¢þ
>WENV181260703
OFFX01000611
[OFFX] mouse gut metagenome; faeces
29179
29253
+
Gly
CCC
[ENA]
¢þ
>WENV181263825
OFFZ01019745
[OFFZ] mouse gut metagenome; faeces
1754
1680
-
Gly
CCC
[ENA]
¢þ
>WENV181272663
OFGG01036214
[OFGG] mouse gut metagenome; faeces
845
771
-
Gly
CCC
[ENA]
¢þ
>WENV181277875
OFGL01051028
[OFGL] mouse gut metagenome; faeces
548
474
-
Gly
CCC
[ENA]
¢þ
>WENV181278731
OFGM01010631
[OFGM] mouse gut metagenome; faeces
891
965
+
Gly
CCC
[ENA]
¢þ
>WENV181280027
OFGN01020173
[OFGN] mouse gut metagenome; faeces
77
151
+
Gly
CCC
[ENA]
¢þ
>WENV181287763
OFGX01032814
[OFGX] mouse gut metagenome; faeces
326
400
+
Gly
CCC
[ENA]
¢þ
>WENV181446015
OGDS01044783
[OGDS] metagenome; Human gut stool
764
690
-
Gly
CCC
[ENA]
¢þ
>WENV181460719
OGEL01044783
[OGEL] metagenome; Human gut stool
764
690
-
Gly
CCC
[ENA]
¢þ
>WENV181525340
OGHJ01000163
[OGHJ] metagenome; Human gut stool
83263
83189
-
Gly
CCC
[ENA]
¢þ
>WENV181702169
OGPH01024621
[OGPH] human gut metagenome; faeces
204
130
-
Gly
CCC
[ENA]
¢þ
>WENV181714382
OGPR01001608
[OGPR] human gut metagenome; faeces
6789
6863
+
Gly
CCC
[ENA]
¢þ
>WENV181742282
OGQK01025397
[OGQK] human gut metagenome; faeces
1079
1005
-
Gly
CCC
[ENA]
¢þ
>WENV181747284
OGQN01017737
[OGQN] human gut metagenome; faeces
391
465
+
Gly
CCC
[ENA]
¢þ
>WENV181800240
OGRY01019936
[OGRY] human gut metagenome; faeces
428
502
+
Gly
CCC
[ENA]
¢þ
>WENV181822135
OGUF01035892
[OGUF] metagenome; Human gut stool
245
319
+
Gly
CCC
[ENA]
¢þ
>WENV181890934
OGXO01002543
[OGXO] human gut metagenome; faeces
8004
7930
-
Gly
CCC
[ENA]
¢þ
>WENV181894045
OGXQ01017294
[OGXQ] human gut metagenome; faeces
1021
947
-
Gly
CCC
[ENA]
¢þ
>WENV181953751
OGZI01024633
[OGZI] human gut metagenome; faeces
1474
1400
-
Gly
CCC
[ENA]
¢þ
>WENV181984698
OHAI01040845
[OHAI] human gut metagenome; faeces
781
855
+
Gly
CCC
[ENA]
¢þ
>WENV181995293
OHAT01001779
[OHAT] human gut metagenome; faeces
8783
8709
-
Gly
CCC
[ENA]
¢þ
>WENV182002136
OHAY01086983
[OHAY] human gut metagenome; faeces
516
442
-
Gly
CCC
[ENA]
¢þ
>W141201057
AZAO01000002
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
14554
14480
-
Gly
CCC
[ENA]
¡û
>WENV182182442
OHNQ01025804
[OHNQ] human gut metagenome; feces
423
497
+
Gly
CCC
[ENA]
¢þ
>WENV182254527
OHTB01024042
[OHTB] human gut metagenome; feces
173
247
+
Gly
CCC
[ENA]
¢þ
>WENV182537453
OIXH01007992
[OIXH] human gut metagenome; faeces
5184
5110
-
Gly
CCC
[ENA]
¢þ
>WENV182596029
OJIY01000369
[OJIY] metagenome; faeces
6830
6756
-
Gly
CCC
[ENA]
¢þ
>WENV182661295
OJMM01064747
[OJMM] human gut metagenome; feces
598
524
-
Gly
CCC
[ENA]
¢þ
>WENV182710921
OJPD01002278
[OJPD] human gut metagenome; stool sample
6983
6909
-
Gly
CCC
[ENA]
¢þ
>WENV182727568
OJPW01000011
[OJPW] human gut metagenome; stool sample
149383
149309
-
Gly
CCC
[ENA]
¢þ
>WENV182740483
OJQL01019696
[OJQL] human gut metagenome; stool sample
202
276
+
Gly
CCC
[ENA]
¢þ
>WENV182882796
OKSB01001533
[OKSB] human gut metagenome; faeces
67
141
+
Gly
CCC
[ENA]
¢þ
>WENV182891917
OKSH01007566
[OKSH] human gut metagenome; faeces
67
141
+
Gly
CCC
[ENA]
¢þ
>WENV183028509
OLFV01002783
[OLFV] human gut metagenome; faeces
12230
12156
-
Gly
CCC
[ENA]
¢þ
>WENV183079611
OLIX01045051
[OLIX] human gut metagenome; feces
144
218
+
Gly
CCC
[ENA]
¢þ
>WENV183223111
OLQM01006768
[OLQM] human gut metagenome; faeces
6745
6671
-
Gly
CCC
[ENA]
¢þ
>WENV183275390
OLRY01045427
[OLRY] human gut metagenome; faeces
157
83
-
Gly
CCC
[ENA]
¢þ
>WENV183357525
OLXF01062498
[OLXF] human gut metagenome; feces
268
194
-
Gly
CCC
[ENA]
¢þ
>WENV183492987
OMGI01003097
[OMGI] human gut metagenome; human gut
1324
1250
-
Gly
CCC
[ENA]
¢þ
>WENV183501599
OMGS01001033
[OMGS] human gut metagenome; human gut
7343
7269
-
Gly
CCC
[ENA]
¢þ
>WENV183505681
OMGX01015588
[OMGX] human gut metagenome; human gut
490
416
-
Gly
CCC
[ENA]
¢þ
>WENV183660039
OQWM01103525
[OQWM] human gut metagenome; human gut
504
578
+
Gly
CCC
[ENA]
¢þ
>WENV183764202
PPYE01319214
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
389
315
-
Gly
CCC
[ENA]
¢þ
>WENV183786955
PPYF01309199
[PPYF] human gut metagenome; stool from patient with Crohn's disease
480
554
+
Gly
CCC
[ENA]
¢þ
>WENV183788911
PPYF01371078
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1493
1419
-
Gly
CCC
[ENA]
¢þ
>WENV170059081
CDZH01033195
[CDZH] gut metagenome; human stools
10438
10512
+
Gly
CCC
[ENA]
¢þ
>WENV170059083
CDZH01033195
[CDZH] gut metagenome; human stools
10665
10739
+
Gly
CCC
[ENA]
¢þ
>WENV170060086
CDZH01073295
[CDZH] gut metagenome; human stools
6412
6338
-
Gly
CCC
[ENA]
¢þ
>WENV170070060
CDZQ01012767
[CDZQ] gut metagenome; human stools
81
155
+
Gly
CCC
[ENA]
¢þ
>WENV170075791
CDZT01046164
[CDZT] gut metagenome; human stools
486
412
-
Gly
CCC
[ENA]
¢þ
>C181081053
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2550326
2550400
+
Gly
CCC
-
¡û
>C191149723
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
634010
633936
-
Gly
CCC
-
¡û
>W09112333
ABXU01000002
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
9455
9381
-
Gly
CCC
[ENA]
¡û
>W09118204
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
686373
686447
+
Gly
CCC
[ENA]
¡û
>W1910020645
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
1602813
1602887
+
Gly
CCC
[ENA]
¡û
>W1910182295
BJMT01000009
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
158833
158759
-
Gly
CCC
[ENA]
¡û
>W1910339995
FTLM01000031
Thermodesulfobacteriota
Mailhella massiliensis Marseille-P3199 [FTLM]
157088
157162
+
Gly
CCC
[ENA]
¡û
>C09103868
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
676320
676246
-
Gly
CCC
[Ensembl]
¡û
>C09104429
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
9590
9516
-
Gly
CCC
[Ensembl]
¡û
>W1810792959
QRJJ01000026
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
330
256
-
Gly
CCC
[ENA]
¡û
>W10111719
ADDR01000183
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
15190
15116
-
Gly
CCC
[ENA]
¡û
>W11107028
ACWM01000077
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
103022
102948
-
Gly
CCC
[ENA]
¡û
>W11114646
ADDR01000183
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
15190
15116
-
Gly
CCC
[ENA]
¡û
>W11178848
AGFG01000070
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
70827
70753
-
Gly
CCC
[ENA]
¡û
>C161069012
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
515718
515644
-
Gly
CCC
[Ensembl]
¡û
>W1710515599
FNBX01000008
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
13363
13289
-
Gly
CCC
[ENA]
¡û
>W1710579865
FPIW01000016
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
953
879
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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