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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406406 (88 seq.)
>W1711334208
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
264
336
+
Val
CAC
[ENA]
¡û
>W1711717994
MTHC01000001
Actinomycetota
Tessaracoccus sp. ZS01 [MTHC]
480600
480528
-
Val
CAC
[ENA]
¡û
>C171091519
CP019229
Actinomycetota
Tessaracoccus sp. T2.5-30 [CP019229]
82128
82056
-
Val
CAC
-
¡û
>C171096222
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1240330
1240256
-
Val
CAC
-
¡û
>C171096265
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
1098527
1098453
-
Val
CAC
-
¡û
>C171096299
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
3550498
3550572
+
Val
CAC
-
¡û
>WENV180728689
ODGU01081518
[ODGU] human metagenome; G_DNA_Supragingival plaque
73
1
-
Val
CAC
[ENA]
¢þ
>WENV180733816
ODGZ01000865
[ODGZ] human metagenome; G_DNA_Supragingival plaque
416
488
+
Val
CAC
[ENA]
¢þ
>WENV180733820
ODGZ01000873
[ODGZ] human metagenome; G_DNA_Supragingival plaque
691
764
+
Val
CAC
[ENA]
¢þ
>WENV180735591
ODHB01000076
[ODHB] human metagenome; G_DNA_Supragingival plaque
34354
34427
+
Val
CAC
[ENA]
¢þ
>WENV180750039
ODHS01000285
[ODHS] human metagenome; G_DNA_Supragingival plaque
2757
2684
-
Val
CAC
[ENA]
¢þ
>WENV180777161
ODIL01000195
[ODIL] human metagenome; G_DNA_Supragingival plaque
10508
10435
-
Val
CAC
[ENA]
¢þ
>WENV180782074
ODIP01018357
[ODIP] human metagenome; G_DNA_Supragingival plaque
962
1035
+
Val
CAC
[ENA]
¢þ
>WENV180789031
ODIS01201657
[ODIS] human metagenome; G_DNA_Supragingival plaque
298
370
+
Val
CAC
[ENA]
¢þ
>WENV180796246
ODJB01002364
[ODJB] human metagenome; G_DNA_Supragingival plaque
8945
8873
-
Val
CAC
[ENA]
¢þ
>WENV180801193
ODJD01012487
[ODJD] human metagenome; G_DNA_Supragingival plaque
433
506
+
Val
CAC
[ENA]
¢þ
>WENV180804398
ODJG01002507
[ODJG] human metagenome; G_DNA_Supragingival plaque
753
826
+
Val
CAC
[ENA]
¢þ
>WENV180814108
ODJO01007197
[ODJO] human metagenome; G_DNA_Supragingival plaque
2736
2663
-
Val
CAC
[ENA]
¢þ
>WENV180822635
ODJT01038977
[ODJT] human metagenome; G_DNA_Supragingival plaque
1
73
+
Val
CAC
[ENA]
¢þ
>WENV180822981
ODJW01001483
[ODJW] human metagenome; G_DNA_Supragingival plaque
2950
2878
-
Val
CAC
[ENA]
¢þ
>WENV180824403
ODJX01005446
[ODJX] human metagenome; G_DNA_Supragingival plaque
2259
2187
-
Val
CAC
[ENA]
¢þ
>WENV180832909
ODKC01007734
[ODKC] human metagenome; G_DNA_Supragingival plaque
2450
2523
+
Val
CAC
[ENA]
¢þ
>WENV180833926
ODKD01001002
[ODKD] human metagenome; G_DNA_Supragingival plaque
6988
6915
-
Val
CAC
[ENA]
¢þ
>WENV180834195
ODKD01005853
[ODKD] human metagenome; G_DNA_Supragingival plaque
2257
2184
-
Val
CAC
[ENA]
¢þ
>WENV180835988
ODKE01026150
[ODKE] human metagenome; G_DNA_Supragingival plaque
421
493
+
Val
CAC
[ENA]
¢þ
>WENV180843842
ODKN01014174
[ODKN] human metagenome; G_DNA_Supragingival plaque
1570
1642
+
Val
CAC
[ENA]
¢þ
>WENV180846603
ODKT01015857
[ODKT] human metagenome; G_DNA_Supragingival plaque
5
78
+
Val
CAC
[ENA]
¢þ
>WENV180859479
ODLD01000877
[ODLD] human metagenome; G_DNA_Supragingival plaque
467
539
+
Val
CAC
[ENA]
¢þ
>WENV180881742
ODMA01068455
[ODMA] human metagenome; G_DNA_Supragingival plaque
32
104
+
Val
CAC
[ENA]
¢þ
>WENV180922497
ODTJ01004886
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4891
4963
+
Val
CAC
[ENA]
¢þ
>WENV180924109
ODTK01001237
[ODTK] human metagenome; G_DNA_Supragingival plaque
7966
8038
+
Val
CAC
[ENA]
¢þ
>WENV180927626
ODTM01001889
[ODTM] human metagenome; G_DNA_Supragingival plaque
7188
7115
-
Val
CAC
[ENA]
¢þ
>WENV180927729
ODTM01002974
[ODTM] human metagenome; G_DNA_Supragingival plaque
4845
4772
-
Val
CAC
[ENA]
¢þ
>WENV180927798
ODTM01004067
[ODTM] human metagenome; G_DNA_Supragingival plaque
4895
4823
-
Val
CAC
[ENA]
¢þ
>WENV180933296
ODTR01000015
[ODTR] human metagenome; G_DNA_Supragingival plaque
10844
10917
+
Val
CAC
[ENA]
¢þ
>WENV180934371
ODTS01000001
[ODTS] human metagenome; G_DNA_Subgingival plaque
266811
266884
+
Val
CAC
[ENA]
¢þ
>WENV180938595
ODTX01003879
[ODTX] human metagenome; G_DNA_Supragingival plaque
6655
6583
-
Val
CAC
[ENA]
¢þ
>WENV180938831
ODTX01007942
[ODTX] human metagenome; G_DNA_Supragingival plaque
2958
2885
-
Val
CAC
[ENA]
¢þ
>WENV180939197
ODTX01019920
[ODTX] human metagenome; G_DNA_Supragingival plaque
674
747
+
Val
CAC
[ENA]
¢þ
>WENV180943936
ODUC01004603
[ODUC] human metagenome; G_DNA_Supragingival plaque
6053
5981
-
Val
CAC
[ENA]
¢þ
>WENV180944583
ODUC01023863
[ODUC] human metagenome; G_DNA_Supragingival plaque
691
764
+
Val
CAC
[ENA]
¢þ
>WENV180958061
ODUL01000250
[ODUL] human metagenome; G_DNA_Supragingival plaque
10225
10152
-
Val
CAC
[ENA]
¢þ
>WENV180964050
ODUO01000164
[ODUO] human metagenome; G_DNA_Supragingival plaque
41596
41523
-
Val
CAC
[ENA]
¢þ
>WENV180972945
ODUW01000576
[ODUW] human metagenome; G_DNA_Supragingival plaque
13336
13408
+
Val
CAC
[ENA]
¢þ
>WENV180973324
ODUW01003447
[ODUW] human metagenome; G_DNA_Supragingival plaque
5028
4955
-
Val
CAC
[ENA]
¢þ
>WENV180973692
ODUW01013206
[ODUW] human metagenome; G_DNA_Supragingival plaque
1233
1160
-
Val
CAC
[ENA]
¢þ
>WENV180980386
ODVE01000095
[ODVE] human metagenome; G_DNA_Supragingival plaque
30371
30299
-
Val
CAC
[ENA]
¢þ
>WENV180982464
ODVF01000024
[ODVF] human metagenome; G_DNA_Supragingival plaque
70320
70247
-
Val
CAC
[ENA]
¢þ
>WENV180987577
ODVK01044847
[ODVK] human metagenome; G_DNA_Supragingival plaque
81
154
+
Val
CAC
[ENA]
¢þ
>WENV180999778
ODVT01065297
[ODVT] human metagenome; G_DNA_Buccal mucosa
41
113
+
Val
CAC
[ENA]
¢þ
>WENV181002362
ODVX01000230
[ODVX] human metagenome; G_DNA_Supragingival plaque
16488
16561
+
Val
CAC
[ENA]
¢þ
>WENV181008541
ODWE01007276
[ODWE] human metagenome; G_DNA_Supragingival plaque
2780
2707
-
Val
CAC
[ENA]
¢þ
>WENV181008952
ODWE01020764
[ODWE] human metagenome; G_DNA_Supragingival plaque
1874
1946
+
Val
CAC
[ENA]
¢þ
>WENV181012824
ODWK01033697
[ODWK] human metagenome; G_DNA_Supragingival plaque
277
205
-
Val
CAC
[ENA]
¢þ
>WENV181049822
ODYD01002412
[ODYD] human metagenome; G_DNA_Supragingival plaque
7179
7106
-
Val
CAC
[ENA]
¢þ
>WENV181049905
ODYD01003130
[ODYD] human metagenome; G_DNA_Supragingival plaque
3956
3883
-
Val
CAC
[ENA]
¢þ
>WENV181050370
ODYD01015290
[ODYD] human metagenome; G_DNA_Supragingival plaque
572
644
+
Val
CAC
[ENA]
¢þ
>WENV181063216
ODYP01000220
[ODYP] human metagenome; G_DNA_Supragingival plaque
31499
31427
-
Val
CAC
[ENA]
¢þ
>WENV181067938
ODZI01077192
[ODZI] human metagenome; G_DNA_Supragingival plaque
435
508
+
Val
CAC
[ENA]
¢þ
>WENV181070446
OEAE01001668
[OEAE] human metagenome; G_DNA_Supragingival plaque
7186
7113
-
Val
CAC
[ENA]
¢þ
>WENV181070646
OEAE01004693
[OEAE] human metagenome; G_DNA_Supragingival plaque
3472
3400
-
Val
CAC
[ENA]
¢þ
>WENV181076804
OEAP01014440
[OEAP] human metagenome; G_DNA_Supragingival plaque
73
1
-
Val
CAC
[ENA]
¢þ
>WENV181078684
OEAS01000315
[OEAS] human metagenome; G_DNA_Supragingival plaque
1873
1946
+
Val
CAC
[ENA]
¢þ
>WENV181079156
OEAS01002503
[OEAS] human metagenome; G_DNA_Supragingival plaque
8371
8298
-
Val
CAC
[ENA]
¢þ
>WENV181082560
OEAV01000074
[OEAV] human metagenome; G_DNA_Supragingival plaque
36852
36925
+
Val
CAC
[ENA]
¢þ
>WENV181091845
OEBC01105120
[OEBC] human metagenome; G_DNA_Supragingival plaque
395
468
+
Val
CAC
[ENA]
¢þ
>WENV181122006
OEFL01045954
[OEFL] human metagenome; G_DNA_Supragingival plaque
433
506
+
Val
CAC
[ENA]
¢þ
>WENV181146186
OEHQ01001606
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4845
4772
-
Val
CAC
[ENA]
¢þ
>WENV181152539
OEIA01002224
[OEIA] human metagenome; G_DNA_Supragingival plaque
8391
8319
-
Val
CAC
[ENA]
¢þ
>WENV181155999
OEIE01001574
[OEIE] human metagenome; G_DNA_Supragingival plaque
458
531
+
Val
CAC
[ENA]
¢þ
>WENV181177202
OEJS01000125
[OEJS] human metagenome; G_DNA_Supragingival plaque
17960
18033
+
Val
CAC
[ENA]
¢þ
>WENV181179123
OEJT01001470
[OEJT] human metagenome; G_DNA_Supragingival plaque
11385
11313
-
Val
CAC
[ENA]
¢þ
>WENV181181673
OEJV01000062
[OEJV] human metagenome; G_DNA_Supragingival plaque
39867
39940
+
Val
CAC
[ENA]
¢þ
>WENV183508563
OMHE01001256
[OMHE] human oral metagenome; human oral
271
344
+
Val
CAC
[ENA]
¢þ
>WENV183509317
OMHH01009056
[OMHH] human oral metagenome; human oral
386
458
+
Val
CAC
[ENA]
¢þ
>WENV183717875
PDWJ01001849
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
32804
32876
+
Val
CAC
[ENA]
¢þ
>WENV183722053
PDWJ01102484
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1198
1124
-
Val
CAC
[ENA]
¢þ
>WENV170685531
LFRM01096943
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
694
622
-
Val
CAC
[ENA]
¢þ
>C191173853
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1676612
1676540
-
Val
CAC
-
¡û
>C191210868
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1672792
1672720
-
Val
CAC
-
¡û
>C191214583
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1664126
1664054
-
Val
CAC
-
¡û
>W1510061412
CCYJ01000020
Actinomycetota
Tessaracoccus massiliensis SIT6 [CCYJ]
399948
400020
+
Val
CAC
[ENA]
¡û
>C121002960
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1688951
1688879
-
Val
CAC
[Ensembl]
¡û
>W1610074466
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
520222
520294
+
Val
CAC
[ENA]
¡û
>W1611066175
MBQD01000023
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
264
336
+
Val
CAC
[ENA]
¡û
>W1710071584
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
520222
520294
+
Val
CAC
[ENA]
¡û
>W1710531779
FNPU01000003
Actinomycetota
Tessaracoccus flavus [FNPU]
79745
79671
-
Val
CAC
[ENA]
¡û
>W1710588351
FQZG01000061
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
16935
16861
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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