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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406658 (84 seq.)
>W1710786923
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2876800
2876872
+
Arg
CCG
[ENA]
¡û
>W1711183425
LWLA01000023
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
316443
316515
+
Arg
CCG
[ENA]
¡û
>W1711386163
MEEZ01000128
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
16680
16606
-
Arg
CCG
[ENA]
¡û
>W1711386198
MEFA01000087
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
1797
1869
+
Arg
CCG
[ENA]
¡û
>W1711387148
MEGH01000066
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
6547
6621
+
Arg
CCG
[ENA]
¡û
>W1711627025
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
2610802
2610874
+
Arg
CCG
[ENA]
¡û
>C171109482
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
1665463
1665535
+
Arg
CCG
-
¡û
>WENV180000030
CZKA01000025
[CZKA] metagenome; liquid mineral medium
79501
79429
-
Arg
CCG
[ENA]
¢þ
>WENV180023479
FTHY01000965
[FTHY] metagenome; soil
1328
1400
+
Arg
CCG
[ENA]
¢þ
>WENV180024722
FTIJ01001093
[FTIJ] metagenome; soil
4944
4872
-
Arg
CCG
[ENA]
¢þ
>WENV180028630
FTJE01292649
[FTJE] metagenome; soil
300
372
+
Arg
CCG
[ENA]
¢þ
>WENV180033199
FTKF01034839
[FTKF] metagenome; soil
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180033281
FTKF01251873
[FTKF] metagenome; soil
609
681
+
Arg
CCG
[ENA]
¢þ
>WENV180035033
FTKT01000306
[FTKT] metagenome; soil
18888
18960
+
Arg
CCG
[ENA]
¢þ
>WENV180343808
OBLK01098644
[OBLK] soil metagenome; Clay
95
168
+
Arg
CCG
[ENA]
¢þ
>WENV180690202
OCZS010000571
[OCZS] soil metagenome; soil
10840
10914
+
Arg
CCG
[ENA]
¢þ
>WENV181166316
OEIU01000081
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
45863
45791
-
Arg
CCG
[ENA]
¢þ
>W141282702
JAIY01000006
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
1032194
1032266
+
Arg
CCG
[ENA]
¡û
>WENV170009665
APMI01001457
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10249
10321
+
Arg
CCG
[ENA]
¢þ
>WENV170565569
FJVZ01000239
[FJVZ] metagenome; soil
1398
1326
-
Arg
CCG
[ENA]
¢þ
>WENV170565591
FJVZ01000753
[FJVZ] metagenome; soil
240
168
-
Arg
CCG
[ENA]
¢þ
>C191159915
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
2449634
2449706
+
Arg
CCG
-
¡û
>W141726651
JNBY01000095
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
413560
413488
-
Arg
CCG
[ENA]
¡û
>W141755532
JNWQ01000004
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
40304
40232
-
Arg
CCG
[ENA]
¡û
>W141755631
JNWR01000019
Actinomycetota
Kitasatospora aureofaciens [JNWR]
157943
158015
+
Arg
CCG
[ENA]
¡û
>W141756078
JNWY01000036
Actinomycetota
Kitasatospora setae [JNWY]
38647
38575
-
Arg
CCG
[ENA]
¡û
>W141757017
JNXO01001961
Actinomycetota
Kitasatospora misakiensis [JNXO]
149
221
+
Arg
CCG
[ENA]
¡û
>W141759678
JNZN01000648
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
3274
3346
+
Arg
CCG
[ENA]
¡û
>W141760850
JOAI01000010
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
129051
128979
-
Arg
CCG
[ENA]
¡û
>W141761741
JOAY01000002
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
126811
126739
-
Arg
CCG
[ENA]
¡û
>W141763720
JOCF01000053
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
56726
56798
+
Arg
CCG
[ENA]
¡û
>W141764987
JODB01001758
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
1628
1556
-
Arg
CCG
[ENA]
¡û
>W141766003
JODS01000004
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
158221
158293
+
Arg
CCG
[ENA]
¡û
>W141766933
JOEH01000016
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
47872
47944
+
Arg
CCG
[ENA]
¡û
>W141768726
JOFK01000005
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
123912
123840
-
Arg
CCG
[ENA]
¡û
>W141770035
JOGF01000539
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
210
282
+
Arg
CCG
[ENA]
¡û
>W141770082
JOGG01000010
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
89747
89819
+
Arg
CCG
[ENA]
¡û
>W141770145
JOGH01000003
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
80092
80164
+
Arg
CCG
[ENA]
¡û
>W141771647
JOHH01003208
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
758
686
-
Arg
CCG
[ENA]
¡û
>W141771905
JOHM01001494
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
390
318
-
Arg
CCG
[ENA]
¡û
>W141771941
JOHN01000010
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
2892
2820
-
Arg
CCG
[ENA]
¡û
>W141772023
JOHO01000009
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
83464
83392
-
Arg
CCG
[ENA]
¡û
>W141774366
JOJA01000010
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
90954
90880
-
Arg
CCG
[ENA]
¡û
>W141818480
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
389082
389154
+
Arg
CCG
[ENA]
¡û
>W141819658
JQMJ01000004
Actinomycetota
Streptacidiphilus rugosus AM-16 [JQMJ]
6340136
6340208
+
Arg
CCG
[ENA]
¡û
>W141819744
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
3295993
3296065
+
Arg
CCG
[ENA]
¡û
>W141820004
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
1392039
1391967
-
Arg
CCG
[ENA]
¡û
>W1910038435
BEGX01000114
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
591845
591917
+
Arg
CCG
[ENA]
¡û
>W1911083721
NNBO01000010
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
173414
173486
+
Arg
CCG
[ENA]
¡û
>W1911243727
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
2856521
2856593
+
Arg
CCG
[ENA]
¡û
>W1911494794
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
2656094
2656166
+
Arg
CCG
[ENA]
¡û
>W1810073023
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
4911444
4911372
-
Arg
CCG
[ENA]
¡û
>W1810120734
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
2901213
2901285
+
Arg
CCG
[ENA]
¡û
>W1810121504
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
3009447
3009519
+
Arg
CCG
[ENA]
¡û
>W1810173031
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
5460710
5460638
-
Arg
CCG
[ENA]
¡û
>W1810173583
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
944927
944999
+
Arg
CCG
[ENA]
¡û
>W1810176391
PJPW02000059
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
5837
5765
-
Arg
CCG
[ENA]
¡û
>W1810394693
PYBW01000035
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
52495
52567
+
Arg
CCG
[ENA]
¡û
>W1810684576
QKYN01000211
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
3801
3729
-
Arg
CCG
[ENA]
¡û
>W1810694003
QLLT01000011
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
198676
198604
-
Arg
CCG
[ENA]
¡û
>W1810907970
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6709861
6709789
-
Arg
CCG
[ENA]
¡û
>W1510013929
BBPL01000004
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
277660
277732
+
Arg
CCG
[ENA]
¡û
>W1510013986
BBPM01000002
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
256838
256910
+
Arg
CCG
[ENA]
¡û
>W1510014116
BBPN01000053
Actinomycetota
Streptacidiphilus jiangxiensis NBRC 100920 [BBPN]
8472
8544
+
Arg
CCG
[ENA]
¡û
>W1510014186
BBPO01000104
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
8312
8386
+
Arg
CCG
[ENA]
¡û
>W1510014260
BBPP01000086
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
4887
4813
-
Arg
CCG
[ENA]
¡û
>W1510014326
BBPQ01000096
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
8504
8576
+
Arg
CCG
[ENA]
¡û
>C10102550
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
1162361
1162435
+
Arg
CCG
[Ensembl]
¡û
>C11111764
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
5531020
5530948
-
Arg
CCG
[Ensembl]
¡û
>C11117097
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
1747823
1747751
-
Arg
CCG
[Ensembl]
¡û
>W1511311646
JPRF01000368
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
8473
8545
+
Arg
CCG
[ENA]
¡û
>W1511519309
JXZB01000004
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
3286472
3286398
-
Arg
CCG
[ENA]
¡û
>W1511545198
JZKG01000091
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
8762
8834
+
Arg
CCG
[ENA]
¡û
>W1511545238
JZKH01000017
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
18373
18301
-
Arg
CCG
[ENA]
¡û
>W1511555653
JZWY01000430
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
8726
8798
+
Arg
CCG
[ENA]
¡û
>W1511590458
LBHA01000256
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
893
821
-
Arg
CCG
[ENA]
¡û
>W1511696805
LGDO01000358
Actinomycetota
Streptomyces sp. XY431 [LGDO]
45197
45269
+
Arg
CCG
[ENA]
¡û
>W1610050375
BBFU01000416
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
1008
936
-
Arg
CCG
[ENA]
¡û
>W1610068239
BCRE01000028
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
4704
4776
+
Arg
CCG
[ENA]
¡û
>W1610650778
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2876800
2876872
+
Arg
CCG
[ENA]
¡û
>W1710046774
BBFU01000416
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
1008
936
-
Arg
CCG
[ENA]
¡û
>W1710065612
BCRE01000028
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
4704
4776
+
Arg
CCG
[ENA]
¡û
>W1710765812
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
480764
480692
-
Arg
CCG
[ENA]
¡û
>W1710769528
LISX01000008
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
265861
265933
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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