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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4067 (59 seq.)
>W1710897115
LNHS01000089
Gammaproteobacteria
Providencia stuartii [LNHS]
58327
58421
+
SeC(p)
TCA
[ENA]
¡û
>W1711144459
LVIE01000156
Gammaproteobacteria
Providencia stuartii [LVIE]
43734
43828
+
SeC(p)
TCA
[ENA]
¡û
>W1711233529
LYBX01000007
Gammaproteobacteria
Providencia rettgeri [LYBX]
340926
341020
+
SeC(p)
TCA
[ENA]
¡û
>W1711684371
MSAA01000010
Gammaproteobacteria
Providencia stuartii [MSAA]
48681
48775
+
SeC(p)
TCA
[ENA]
¡û
>W1712108848
NJEY01000002
Gammaproteobacteria
Providencia stuartii [NJEY]
1498420
1498514
+
SeC(p)
TCA
[ENA]
¡û
>C171056074
CP017054
Gammaproteobacteria
Providencia stuartii BE2467 [CP017054]
2848974
2848880
-
SeC(p)
TCA
-
¡û
>C171065720
CP017671
Gammaproteobacteria
Providencia rettgeri RB151 [CP017671]
142429
142523
+
SeC(p)
TCA
-
¡û
>WENV180044248
MAUZ01000277
[MAUZ] viral metagenome; DNA from tracheal sample collected at farm Unique, Mogri
556
462
-
SeC
TCA
[ENA]
¢þ
>W141022125
AJSB01000001
Gammaproteobacteria
Providencia rettgeri Dmel1 [AJSB]
288132
288038
-
SeC(p)
TCA
[ENA]
¡û
>W141024340
AKKL01000045
Gammaproteobacteria
Providencia burhodogranariea DSM 19968 [AKKL]
112768
112674
-
SeC(p)
TCA
[ENA]
¡û
>W141024413
AKKM01000042
Gammaproteobacteria
Providencia alcalifaciens Dmel2 [AKKM]
12113
12019
-
SeC(p)
TCA
[ENA]
¡û
>W141024431
AKKN01000003
Gammaproteobacteria
Providencia sneebia DSM 19967 [AKKN]
38393
38487
+
SeC(p)
TCA
[ENA]
¡û
>W08006516
ABJD02000105
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
15404
15310
-
SeC
TCA
[ENA]
¡û
>W141221467
AZYZ01000016
Gammaproteobacteria
Providencia alcalifaciens PAL-3 [AZYZ]
10120
10026
-
SeC(p)
TCA
[ENA]
¡û
>WENV182621593
OJKJ01000152
[OJKJ] metagenome; faeces
6387
6293
-
SeC
TCA
[ENA]
¢þ
>W141275281
JACS01000073
Gammaproteobacteria
Providencia alcalifaciens F90-2004 [JACS]
38769
38863
+
SeC(p)
TCA
[ENA]
¡û
>W141283219
JAKZ01000052
Gammaproteobacteria
Providencia alcalifaciens PAL-2 [JAKZ]
12158
12064
-
SeC(p)
TCA
[ENA]
¡û
>W141283252
JALA01000005
Gammaproteobacteria
Providencia alcalifaciens PAL-1 [JALA]
42022
42116
+
SeC(p)
TCA
[ENA]
¡û
>W141283300
JALB01000004
Gammaproteobacteria
Providencia alcalifaciens RIMD 1656011 [JALB]
270048
269954
-
SeC(p)
TCA
[ENA]
¡û
>W141283368
JALC01000011
Gammaproteobacteria
Providencia alcalifaciens R90-1475 [JALC]
12153
12059
-
SeC(p)
TCA
[ENA]
¡û
>W141283422
JALD01000012
Gammaproteobacteria
Providencia alcalifaciens 205/92 [JALD]
9993
9899
-
SeC(p)
TCA
[ENA]
¡û
>WENV170656628
JTFO01029256
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
133
227
+
SeC(p)
TCA
[ENA]
¢þ
>C181084096
CP023536
Gammaproteobacteria
Providencia alcalifaciens FDAARGOS_408 [CP023536]
927443
927349
-
SeC
TCA
-
¡û
>C181138176
CP026704
Gammaproteobacteria
Providencia stuartii AR_0026 [CP026704]
1511472
1511378
-
SeC
TCA
-
¡û
>C181152004
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
4116665
4116759
+
SeC
TCA
-
¡û
>C181152617
CP027418
Gammaproteobacteria
Providencia rettgeri FDAARGOS_330 [CP027418]
1555666
1555760
+
SeC
TCA
-
¡û
>C181184477
CP029736
Gammaproteobacteria
Providencia rettgeri AR_0082 [CP029736]
664266
664172
-
SeC
TCA
-
¡û
>C181195869
CP031123
Gammaproteobacteria
Providencia huaxiensis WCHPr000369 [CP031123]
3023137
3023043
-
SeC
TCA
-
¡û
>C181212359
LS483422
Gammaproteobacteria
Providencia heimbachae NCTC12003 [LS483422]
147297
147391
+
SeC
TCA
-
¡û
>C181215311
LS483467
Gammaproteobacteria
Providencia alcalifaciens NCTC10286 [LS483467]
112443
112537
+
SeC
TCA
-
¡û
>C191057217
CP028384
Gammaproteobacteria
Providencia heimbachae 99101 [CP028384]
136396
136490
+
Sec
TCA
-
¡û
>C191171978
CP039844
Gammaproteobacteria
Providencia rettgeri Pr-15-2-50 [CP039844]
149779
149873
+
Sec
TCA
-
¡û
>C191199161
LR134189
Gammaproteobacteria
Providencia rustigianii NCTC6933 [LR134189]
111800
111894
+
Sec
TCA
-
¡û
>C191210572
LR134396
Gammaproteobacteria
Providencia rustigianii NCTC8113 [LR134396]
114863
114957
+
Sec
TCA
-
¡û
>W09112421
ABXV01000035
Gammaproteobacteria
Providencia rustigianii DSM 4541 [ABXV]
38729
38823
+
SeC
TCA
[ENA]
¡û
>W09112467
ABXW01000005
Gammaproteobacteria
Providencia alcalifaciens DSM 30120 [ABXW]
38671
38765
+
SeC
TCA
[ENA]
¡û
>W09117700
ACCI01000068
Gammaproteobacteria
Providencia rettgeri DSM 1131 [ACCI]
89959
89865
-
SeC
TCA
[ENA]
¡û
>W1911049426
NMED01000036
Gammaproteobacteria
Escherichia coli MOD1-EC6040 [NMED]
12097
12003
-
Sec
TCA
[ENA]
¡û
>W1911137374
NOWC01000035
Gammaproteobacteria
Providencia rettgeri PR1 [NOWC]
7588
7494
-
Sec
TCA
[ENA]
¡û
>W1911429417
NXKD01000003
Gammaproteobacteria
Providencia rettgeri PR002 [NXKD]
43577
43671
+
Sec
TCA
[ENA]
¡û
>W1911744591
QVPC01000012
Gammaproteobacteria
Providencia rettgeri DCX [QVPC]
74505
74599
+
Sec
TCA
[ENA]
¡û
>W1810015009
BGMI01000024
Gammaproteobacteria
Providencia rettgeri TUM9994 [BGMI]
11225
11131
-
Sec
TCA
[ENA]
¡û
>W1810091227
PGGX01000013
Gammaproteobacteria
Providencia stuartii YD789-2 [PGGX]
114427
114333
-
Sec
TCA
[ENA]
¡û
>W1810376739
PXIC01000017
Gammaproteobacteria
Providencia alcalifaciens PRM-2 [PXIC]
12638
12544
-
Sec
TCA
[ENA]
¡û
>W1810678943
QKNQ01000002
Gammaproteobacteria
Providencia rettgeri Pret_2032 [QKNQ]
296526
296432
-
Sec
TCA
[ENA]
¡û
>W1810869966
QUAF01000006
Gammaproteobacteria
Providencia rettgeri NVIT03 [QUAF]
45243
45337
+
Sec
TCA
[ENA]
¡û
>C151040020
CP008920
Gammaproteobacteria
Providencia stuartii ATCC 33672 [CP008920]
1302057
1302151
+
SeC
TCA
[Ensembl]
¡û
>W1510642688
CVLT01000009
Gammaproteobacteria
Providencia rettgeri H1736 [CVLT]
21618
21524
-
SeC
TCA
[ENA]
¡û
>W1511365782
JSEQ01000014
Gammaproteobacteria
Providencia rettgeri CCBH11880 [JSEQ]
40890
40796
-
SeC
TCA
[ENA]
¡û
>W1511393847
JTAU01000001
Gammaproteobacteria
Providencia stuartii FDAARGOS_87 [JTAU]
2507328
2507234
-
SeC
TCA
[ENA]
¡û
>W1511426191
JUBW01000055
Gammaproteobacteria
Escherichia coli CVM N38795PS [JUBW]
19302
19396
+
SeC
TCA
[ENA]
¡û
>W1511621885
LCVM01000225
Gammaproteobacteria
Providencia rettgeri MR4 [LCVM]
334
240
-
SeC
TCA
[ENA]
¡û
>C121013433
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
2123679
2123585
-
SeC
TCA
[Ensembl]
¡û
>C161064805
CP014024
Gammaproteobacteria
Providencia stuartii FDAARGOS_145 [CP014024]
3193252
3193346
+
SeC(p)
TCA
-
¡û
>W1610419452
FIZD01000005
Gammaproteobacteria
Providencia heimbachae [FIZD]
311935
311841
-
SeC(p)
TCA
[ENA]
¡û
>W1610757519
LNHS01000089
Gammaproteobacteria
Providencia stuartii [LNHS]
58327
58421
+
SeC(p)
TCA
[ENA]
¡û
>W1610994915
LXEW01000032
Gammaproteobacteria
Providencia heimbachae ATCC 35613 [LXEW]
44385
44479
+
SeC(p)
TCA
[ENA]
¡û
>W1611014082
LYBX01000007
Gammaproteobacteria
Providencia rettgeri [LYBX]
340926
341020
+
SeC(p)
TCA
[ENA]
¡û
>W1710419188
FIZD01000005
Gammaproteobacteria
Providencia heimbachae [FIZD]
311935
311841
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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