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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406803 (34 seq.)
>W1710893499
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
255660
255586
-
Gln
TTG
[ENA]
¡û
>C171115959
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
27933
27859
-
Gln
TTG
-
¡û
>WENV180020158
FTCV01002649
[FTCV] metagenome; soil
8816
8890
+
Gln
TTG
[ENA]
¢þ
>WENV180257307
OBEQ010897499
[OBEQ] groundwater metagenome; groundwater
69
143
+
Gln
TTG
[ENA]
¢þ
>WENV180260118
OBEQ011171019
[OBEQ] groundwater metagenome; groundwater
322
248
-
Gln
TTG
[ENA]
¢þ
>WENV181144542
OEHO01035634
[OEHO] metagenome; unknown
203
277
+
Gln
TTG
[ENA]
¢þ
>WENV181168355
OEIU01297720
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
16
90
+
Gln
TTG
[ENA]
¢þ
>WENV183660238
ORJL010007737
[ORJL] groundwater metagenome; groundwater
700
774
+
Gln
TTG
[ENA]
¢þ
>WENV183672785
ORJL011208644
[ORJL] groundwater metagenome; groundwater
3472
3398
-
Gln
TTG
[ENA]
¢þ
>WENV183676606
ORJL011646477
[ORJL] groundwater metagenome; groundwater
2557
2483
-
Gln
TTG
[ENA]
¢þ
>WENV183679606
ORMF010084611
[ORMF] groundwater metagenome; groundwater
260
186
-
Gln
TTG
[ENA]
¢þ
>WENV183680773
ORMF010220986
[ORMF] groundwater metagenome; groundwater
781
855
+
Gln
TTG
[ENA]
¢þ
>WENV183682569
ORMF010460422
[ORMF] groundwater metagenome; groundwater
915
989
+
Gln
TTG
[ENA]
¢þ
>WENV183684074
ORMF010658560
[ORMF] groundwater metagenome; groundwater
443
369
-
Gln
TTG
[ENA]
¢þ
>WENV183687285
ORMF011123513
[ORMF] groundwater metagenome; groundwater
82
8
-
Gln
TTG
[ENA]
¢þ
>WENV183691208
ORMF011722278
[ORMF] groundwater metagenome; groundwater
443
369
-
Gln
TTG
[ENA]
¢þ
>WENV183692222
ORMF011881897
[ORMF] groundwater metagenome; groundwater
1090
1164
+
Gln
TTG
[ENA]
¢þ
>WENV183694474
ORMF012239835
[ORMF] groundwater metagenome; groundwater
468
542
+
Gln
TTG
[ENA]
¢þ
>WENV170003639
AGTN01403158
[AGTN] bioreactor metagenome; poplar biomass
89
163
+
Gln
TTG
[ENA]
¢þ
>WENV170576540
FRDC01000847
[FRDC] freshwater metagenome; water
341908
341982
+
Gln
TTG
[ENA]
¢þ
>WENV170577532
FSSH01000122
[FSSH] freshwater metagenome; drinking water
10399
10473
+
Gln
TTG
[ENA]
¢þ
>WENV170680634
LFEF01005855
[LFEF] freshwater metagenome; waterbloom
194
268
+
Gln
TTG
[ENA]
¢þ
>WENV170708952
LNFM01000043
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3814
3888
+
Gln
TTG
[ENA]
¢þ
>WENV170709184
LNFM01000166
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
158483
158409
-
Gln
TTG
[ENA]
¢þ
>WENV170709247
LNFM01000215
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
202
276
+
Gln
TTG
[ENA]
¢þ
>C181001061
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
4179006
4178932
-
Gln
TTG
-
¡û
>C191000417
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
1881272
1881198
-
Gln
TTG
-
¡û
>C191005692
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2704828
2704754
-
Gln
TTG
-
¡û
>C191152100
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3218768
3218694
-
Gln
TTG
-
¡û
>W1911148482
NPEW01000374
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
849
775
-
Gln
TTG
[ENA]
¡û
>C161016818
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
3061745
3061819
+
Gln
TTG
[Ensembl]
¡û
>C161048039
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
663643
663569
-
Gln
TTG
-
¡û
>C161108117
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
63617
63543
-
Gln
TTG
[Ensembl]
¡û
>W1610753765
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
255660
255586
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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