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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407330 (81 seq.)
>W131162576
AQYZ01000007
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
7460
7388
-
Arg
CCG
[ENA]
¡û
>W131162956
AQZI01000004
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
3547
3475
-
Arg
CCG
[ENA]
¡û
>WENV180110808
OAPN01007431
[OAPN] marine metagenome; 2011
750
678
-
Arg
CCG
[ENA]
¢þ
>WENV180357550
OBNN01027177
[OBNN] marine metagenome; Coastal water
32
104
+
Arg
CCG
[ENA]
¢þ
>WENV180377049
OBON01000015
[OBON] marine metagenome; sea water
13271
13199
-
Arg
CCG
[ENA]
¢þ
>WENV180591873
OCOV01125799
[OCOV] marine metagenome; ENVO:01000301
42
114
+
Arg
CCG
[ENA]
¢þ
>WENV181367243
OFPW01007944
[OFPW] freshwater metagenome; Freshwater Lake
225
297
+
Arg
CCG
[ENA]
¢þ
>WENV181367405
OFQB01000429
[OFQB] freshwater metagenome; Freshwater Lake
1810
1738
-
Arg
CCG
[ENA]
¢þ
>WENV181367656
OFQC01000402
[OFQC] freshwater metagenome; Freshwater Lake
1830
1902
+
Arg
CCG
[ENA]
¢þ
>WENV181368321
OFQL01000661
[OFQL] freshwater metagenome; Freshwater Lake
678
606
-
Arg
CCG
[ENA]
¢þ
>WENV181368421
OFQL01003924
[OFQL] freshwater metagenome; Freshwater Lake
1129
1203
+
Arg
CCG
[ENA]
¢þ
>WENV181368741
OFQN01000206
[OFQN] freshwater metagenome; Freshwater Lake
6479
6407
-
Arg
CCG
[ENA]
¢þ
>WENV181369363
OFQP01000768
[OFQP] freshwater metagenome; Freshwater Lake
609
537
-
Arg
CCG
[ENA]
¢þ
>WENV181369384
OFQP01001040
[OFQP] freshwater metagenome; Freshwater Lake
222
150
-
Arg
CCG
[ENA]
¢þ
>WENV181369799
OFQR01000157
[OFQR] freshwater metagenome; Freshwater Lake
1375
1447
+
Arg
CCG
[ENA]
¢þ
>WENV181369948
OFQR01002992
[OFQR] freshwater metagenome; Freshwater Lake
29
101
+
Arg
CCG
[ENA]
¢þ
>WENV181370170
OFQS01000224
[OFQS] freshwater metagenome; Freshwater Lake
67
139
+
Arg
CCG
[ENA]
¢þ
>WENV181370409
OFQS01009252
[OFQS] freshwater metagenome; Freshwater Lake
250
322
+
Arg
CCG
[ENA]
¢þ
>WENV181370680
OFQT01002912
[OFQT] freshwater metagenome; Freshwater Lake
1252
1324
+
Arg
CCG
[ENA]
¢þ
>WENV181376766
OFRA01000072
[OFRA] wastewater metagenome; Lake Maggiore Verbania
6110
6038
-
Arg
CCG
[ENA]
¢þ
>WENV181379447
OFRD01001686
[OFRD] wastewater metagenome; Exp Tend CN 100WW
5763
5835
+
Arg
CCG
[ENA]
¢þ
>WENV181380087
OFRD01029357
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1012
940
-
Arg
CCG
[ENA]
¢þ
>WENV181384285
OFRI01000004
[OFRI] wastewater metagenome; Exp Tend VB 90WW
26423
26495
+
Arg
CCG
[ENA]
¢þ
>WENV181385915
OFRL01000098
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
18192
18264
+
Arg
CCG
[ENA]
¢þ
>WENV181386194
OFRL01001203
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
6229
6157
-
Arg
CCG
[ENA]
¢þ
>WENV181395732
OFSB01001110
[OFSB] freshwater metagenome; Freshwater Lake
1690
1762
+
Arg
CCG
[ENA]
¢þ
>WENV181399461
OFSE01033699
[OFSE] wastewater metagenome; Exp Tend VB 50WW
457
385
-
Arg
CCG
[ENA]
¢þ
>WENV181399881
OFSF01000130
[OFSF] wastewater metagenome; Exp Tend VB 100WW
27937
28009
+
Arg
CCG
[ENA]
¢þ
>WENV181400422
OFSF01006202
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1125
1053
-
Arg
CCG
[ENA]
¢þ
>WENV181836907
OGVJ01047988
[OGVJ] freshwater metagenome; freshwater
368
296
-
Arg
CCG
[ENA]
¢þ
>WENV181845581
OGVX01004567
[OGVX] freshwater metagenome; freshwater
609
537
-
Arg
CCG
[ENA]
¢þ
>WENV181847291
OGVY01012446
[OGVY] freshwater metagenome; freshwater
244
172
-
Arg
CCG
[ENA]
¢þ
>WENV181848237
OGVZ01003558
[OGVZ] freshwater metagenome; freshwater
2550
2622
+
Arg
CCG
[ENA]
¢þ
>WENV181848426
OGVZ01007026
[OGVZ] freshwater metagenome; freshwater
1699
1627
-
Arg
CCG
[ENA]
¢þ
>WENV181848501
OGVZ01009198
[OGVZ] freshwater metagenome; freshwater
144
72
-
Arg
CCG
[ENA]
¢þ
>WENV181854482
OGWK01003136
[OGWK] freshwater metagenome; freshwater
1712
1784
+
Arg
CCG
[ENA]
¢þ
>WENV181854520
OGWK01004704
[OGWK] freshwater metagenome; freshwater
1275
1347
+
Arg
CCG
[ENA]
¢þ
>WENV183666410
ORJL010548685
[ORJL] groundwater metagenome; groundwater
1058
1130
+
Arg
CCG
[ENA]
¢þ
>WENV001985
AACY020055863
Marine microbial communities from Global Ocean Sampling (GOS)
1012
1086
+
Arg
CCG
[ENA]
>WENV170572000
FLOH01000439
[FLOH] marine metagenome; water
14651
14579
-
Arg
CCG
[ENA]
¢þ
>WENV170624653
FUWD013184666
[FUWD] metagenome; unknown
9383
9311
-
Arg
CCG
[ENA]
¢þ
>WENV170624654
FUWD013184667
[FUWD] metagenome; unknown
73
1
-
Arg
CCG
[ENA]
¢þ
>WENV170632935
FUWD013389013
[FUWD] metagenome; unknown
9383
9311
-
Arg
CCG
[ENA]
¢þ
>WENV170632936
FUWD013389014
[FUWD] metagenome; unknown
73
1
-
Arg
CCG
[ENA]
¢þ
>WENV170645488
JNSK01000007
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
55186
55112
-
Arg
CCG
[ENA]
¢þ
>WENV170645498
JNSK01000019
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2147
2221
+
Arg
CCG
[ENA]
¢þ
>WENV170645502
JNSK01000021
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
19207
19279
+
Arg
CCG
[ENA]
¢þ
>WENV170645503
JNSK01000024
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16751
16823
+
Arg
CCG
[ENA]
¢þ
>WENV002086
AACY020058353
Marine microbial communities from Global Ocean Sampling (GOS)
5129
5055
-
Arg
CCG
[ENA]
>C181018707
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
657672
657600
-
Arg
CCG
-
¡û
>C181018744
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
690760
690688
-
Arg
CCG
-
¡û
>C181020852
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1066413
1066485
+
Arg
CCG
-
¡û
>C181021073
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
939994
940066
+
Arg
CCG
-
¡û
>C181021105
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1043497
1043569
+
Arg
CCG
-
¡û
>C181021261
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
990463
990535
+
Arg
CCG
-
¡û
>C181021374
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1015247
1015319
+
Arg
CCG
-
¡û
>WENV024342
AACY020798256
Marine microbial communities from Global Ocean Sampling (GOS)
339
413
+
Arg
CCG
[ENA]
>WENV026174
AACY020945877
Marine microbial communities from Global Ocean Sampling (GOS)
478
404
-
Arg
CCG
[ENA]
>WENV031488
AACY021371963
Marine microbial communities from Global Ocean Sampling (GOS)
303
377
+
Arg
CCG
[ENA]
>WENV057562
AACY023298994
Marine microbial communities from Global Ocean Sampling (GOS)
636
562
-
Arg
CCG
[ENA]
>WENV058211
AACY023321203
Marine microbial communities from Global Ocean Sampling (GOS)
1419
1493
+
Arg
CCG
[ENA]
>WENV058351
AACY023325920
Marine microbial communities from Global Ocean Sampling (GOS)
590
664
+
Arg
CCG
[ENA]
>WENV058902
AACY023346402
Marine microbial communities from Global Ocean Sampling (GOS)
1038
1112
+
Arg
CCG
[ENA]
>WENV059108
AACY023353829
Marine microbial communities from Global Ocean Sampling (GOS)
790
716
-
Arg
CCG
[ENA]
>WENV006263
AACY020170996
Marine microbial communities from Global Ocean Sampling (GOS)
2042
1968
-
Arg
CCG
[ENA]
>W1610625343
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
>W1610625518
LIAS01000065
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
396
324
-
Arg
CCG
[ENA]
¡û
>W1610625537
LIAT01000010
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120813-bin23 [LIAT]
1605
1533
-
Arg
CCG
[ENA]
¡û
>W1610625563
LIAU01000086
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120820-bin50 [LIAU]
847
775
-
Arg
CCG
[ENA]
¡û
>W1610625635
LIAW01000310
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121001-bin67 [LIAW]
369
297
-
Arg
CCG
[ENA]
¡û
>W1610625639
LIAX01000001
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121220-bin52 [LIAX]
19451
19379
-
Arg
CCG
[ENA]
¡û
>W1610626136
LIBS01000117
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120920-bin34 [LIBS]
763
691
-
Arg
CCG
[ENA]
¡û
>W1610627258
LIDL01000209
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120507-bin38 [LIDL]
272
344
+
Arg
CCG
[ENA]
¡û
>W1710756470
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
>W1710756645
LIAS01000065
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120802-bin41 [LIAS]
396
324
-
Arg
CCG
[ENA]
¡û
>W1710756664
LIAT01000010
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120813-bin23 [LIAT]
1605
1533
-
Arg
CCG
[ENA]
¡û
>W1710756690
LIAU01000086
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120820-bin50 [LIAU]
847
775
-
Arg
CCG
[ENA]
¡û
>W1710756762
LIAW01000310
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121001-bin67 [LIAW]
369
297
-
Arg
CCG
[ENA]
¡û
>W1710756766
LIAX01000001
Actinomycetota
Actinobacteria bacterium BACL2 MAG-121220-bin52 [LIAX]
19451
19379
-
Arg
CCG
[ENA]
¡û
>W1710757263
LIBS01000117
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120920-bin34 [LIBS]
763
691
-
Arg
CCG
[ENA]
¡û
>W1710758385
LIDL01000209
Actinomycetota
Actinobacteria bacterium BACL2 MAG-120507-bin38 [LIDL]
272
344
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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