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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407608 (142 seq.)
>W1711581271
MNTW01000022
Deltaproteobacteria
Desulfovibrio piger (MNTW)
10306
10380
+
Gln
TTG
[ENA]
¡û
>C171129848
LT630450
Deltaproteobacteria
Desulfovibrio piger (LT630450)
594987
594913
-
Gln
TTG
-
¡û
>W131215421
ATUZ01000015
Deltaproteobacteria
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
267634
267560
-
Gln
TTG
[ENA]
¡û
>WENV180208295
OBAI01119995
[OBAI] human gut metagenome; human gut
35
109
+
Gln
TTG
[ENA]
¢þ
>WENV180223422
OBBG01019216
[OBBG] human gut metagenome; human gut
219
145
-
Gln
TTG
[ENA]
¢þ
>WENV180534838
OCHM01082748
[OCHM] human gut metagenome; human gut
181
107
-
Gln
TTG
[ENA]
¢þ
>WENV180711201
ODFM01080338
[ODFM] human metagenome; G_DNA_Stool
37
111
+
Gln
TTG
[ENA]
¢þ
>WENV180762812
ODHZ01363504
[ODHZ] human metagenome; G_DNA_Stool
131
205
+
Gln
TTG
[ENA]
¢þ
>WENV180909212
ODQJ01118099
[ODQJ] human metagenome; G_DNA_Stool
246
172
-
Gln
TTG
[ENA]
¢þ
>WENV180927044
ODTL01165930
[ODTL] human metagenome; G_DNA_Stool
84
10
-
Gln
TTG
[ENA]
¢þ
>WENV180962708
ODUN01022823
[ODUN] human metagenome; G_DNA_Stool
1026
1100
+
Gln
TTG
[ENA]
¢þ
>WENV181333248
OFMA01071597
[OFMA] human gut metagenome; human gut
314
388
+
Gln
TTG
[ENA]
¢þ
>WENV181341319
OFMH01040459
[OFMH] human gut metagenome; human gut
407
333
-
Gln
TTG
[ENA]
¢þ
>WENV181451533
OGDY01007853
[OGDY] metagenome; Human gut stool
2155
2229
+
Gln
TTG
[ENA]
¢þ
>WENV181504078
OGGJ01022302
[OGGJ] metagenome; Human gut stool
847
921
+
Gln
TTG
[ENA]
¢þ
>WENV181525129
OGHJ01000020
[OGHJ] metagenome; Human gut stool
190564
190638
+
Gln
TTG
[ENA]
¢þ
>WENV181529183
OGHL01033001
[OGHL] metagenome; Human gut stool
267
341
+
Gln
TTG
[ENA]
¢þ
>WENV181578587
OGJY01002511
[OGJY] metagenome; Human gut stool
10954
10880
-
Gln
TTG
[ENA]
¢þ
>WENV181604128
OGLI01008391
[OGLI] metagenome; Human gut stool
2196
2122
-
Gln
TTG
[ENA]
¢þ
>WENV181609405
OGLN01027223
[OGLN] metagenome; Human gut stool
714
788
+
Gln
TTG
[ENA]
¢þ
>WENV181621812
OGMF01016558
[OGMF] metagenome; Human gut stool
519
593
+
Gln
TTG
[ENA]
¢þ
>WENV181637229
OGNB01002155
[OGNB] metagenome; Human gut stool
5585
5659
+
Gln
TTG
[ENA]
¢þ
>WENV181641601
OGNF01007654
[OGNF] metagenome; Human gut stool
3305
3231
-
Gln
TTG
[ENA]
¢þ
>WENV181666428
OGOJ01074167
[OGOJ] human gut metagenome; faeces
404
330
-
Gln
TTG
[ENA]
¢þ
>WENV181669502
OGOL01043555
[OGOL] human gut metagenome; faeces
759
833
+
Gln
TTG
[ENA]
¢þ
>WENV181676057
OGOP01030210
[OGOP] human gut metagenome; faeces
740
666
-
Gln
TTG
[ENA]
¢þ
>WENV181678142
OGOQ01057598
[OGOQ] human gut metagenome; faeces
430
356
-
Gln
TTG
[ENA]
¢þ
>WENV181710241
OGPN01039915
[OGPN] human gut metagenome; faeces
507
433
-
Gln
TTG
[ENA]
¢þ
>WENV181714735
OGPR01004847
[OGPR] human gut metagenome; faeces
3555
3629
+
Gln
TTG
[ENA]
¢þ
>WENV181718853
OGPT01065394
[OGPT] human gut metagenome; faeces
377
451
+
Gln
TTG
[ENA]
¢þ
>WENV181727417
OGQA01000154
[OGQA] human gut metagenome; faeces
2924
2850
-
Gln
TTG
[ENA]
¢þ
>WENV181747485
OGQN01039586
[OGQN] human gut metagenome; faeces
567
641
+
Gln
TTG
[ENA]
¢þ
>WENV181757566
OGQT01038318
[OGQT] human gut metagenome; faeces
85
159
+
Gln
TTG
[ENA]
¢þ
>WENV181765881
OGQY01074614
[OGQY] human gut metagenome; faeces
100
174
+
Gln
TTG
[ENA]
¢þ
>WENV181767377
OGQZ01037166
[OGQZ] human gut metagenome; faeces
633
559
-
Gln
TTG
[ENA]
¢þ
>WENV181785235
OGRM01012392
[OGRM] human gut metagenome; faeces
2622
2548
-
Gln
TTG
[ENA]
¢þ
>WENV181865650
OGWU01059662
[OGWU] human gut metagenome; faeces
407
481
+
Gln
TTG
[ENA]
¢þ
>WENV181871051
OGWY01077542
[OGWY] human gut metagenome; faeces
352
426
+
Gln
TTG
[ENA]
¢þ
>WENV181874725
OGXA01063113
[OGXA] human gut metagenome; faeces
361
435
+
Gln
TTG
[ENA]
¢þ
>WENV181877205
OGXD01002827
[OGXD] human gut metagenome; faeces
9313
9239
-
Gln
TTG
[ENA]
¢þ
>WENV181884087
OGXI01038956
[OGXI] human gut metagenome; faeces
434
360
-
Gln
TTG
[ENA]
¢þ
>WENV181885470
OGXJ01022560
[OGXJ] human gut metagenome; faeces
175
249
+
Gln
TTG
[ENA]
¢þ
>WENV181891491
OGXO01025922
[OGXO] human gut metagenome; faeces
458
532
+
Gln
TTG
[ENA]
¢þ
>WENV181898693
OGXT01010265
[OGXT] human gut metagenome; faeces
2337
2411
+
Gln
TTG
[ENA]
¢þ
>WENV181902667
OGXW01062037
[OGXW] human gut metagenome; faeces
278
204
-
Gln
TTG
[ENA]
¢þ
>WENV181902904
OGXX01000084
[OGXX] human gut metagenome; faeces
75166
75240
+
Gln
TTG
[ENA]
¢þ
>WENV181907149
OGXZ01044099
[OGXZ] human gut metagenome; faeces
432
506
+
Gln
TTG
[ENA]
¢þ
>WENV181910330
OGYC01006763
[OGYC] human gut metagenome; faeces
3125
3051
-
Gln
TTG
[ENA]
¢þ
>WENV181913142
OGYE01003415
[OGYE] human gut metagenome; faeces
2296
2370
+
Gln
TTG
[ENA]
¢þ
>WENV181921453
OGYJ01044952
[OGYJ] human gut metagenome; faeces
115
41
-
Gln
TTG
[ENA]
¢þ
>WENV181926095
OGYM01027112
[OGYM] human gut metagenome; faeces
627
553
-
Gln
TTG
[ENA]
¢þ
>WENV181928820
OGYO01004748
[OGYO] human gut metagenome; faeces
377
451
+
Gln
TTG
[ENA]
¢þ
>WENV181943070
OGYZ01003105
[OGYZ] human gut metagenome; faeces
7097
7171
+
Gln
TTG
[ENA]
¢þ
>WENV181953801
OGZI01032321
[OGZI] human gut metagenome; faeces
209
135
-
Gln
TTG
[ENA]
¢þ
>WENV181955928
OGZK01012212
[OGZK] human gut metagenome; faeces
2046
1972
-
Gln
TTG
[ENA]
¢þ
>WENV181961292
OGZO01006230
[OGZO] human gut metagenome; faeces
1022
1096
+
Gln
TTG
[ENA]
¢þ
>WENV181973378
OHAA01035823
[OHAA] human gut metagenome; faeces
294
220
-
Gln
TTG
[ENA]
¢þ
>WENV181980464
OHAF01035994
[OHAF] human gut metagenome; faeces
1078
1004
-
Gln
TTG
[ENA]
¢þ
>WENV181984768
OHAI01066936
[OHAI] human gut metagenome; faeces
312
238
-
Gln
TTG
[ENA]
¢þ
>WENV181985166
OHAJ01000988
[OHAJ] human gut metagenome; faeces
8752
8826
+
Gln
TTG
[ENA]
¢þ
>WENV181991545
OHAQ01003236
[OHAQ] human gut metagenome; faeces
8842
8768
-
Gln
TTG
[ENA]
¢þ
>WENV181995642
OHAT01005644
[OHAT] human gut metagenome; faeces
2028
1954
-
Gln
TTG
[ENA]
¢þ
>WENV182009848
OHBJ01059635
[OHBJ] human gut metagenome; faeces
452
378
-
Gln
TTG
[ENA]
¢þ
>WENV182012112
OHBM01008737
[OHBM] human gut metagenome; faeces
758
832
+
Gln
TTG
[ENA]
¢þ
>WENV182030654
OHCR01047404
[OHCR] human gut metagenome; feces
506
432
-
Gln
TTG
[ENA]
¢þ
>WENV182097437
OHHO01043790
[OHHO] human gut metagenome; feces
496
422
-
Gln
TTG
[ENA]
¢þ
>WENV182128752
OHJY01020553
[OHJY] human gut metagenome; feces
289
363
+
Gln
TTG
[ENA]
¢þ
>WENV182135186
OHKI01015311
[OHKI] human gut metagenome; feces
450
376
-
Gln
TTG
[ENA]
¢þ
>WENV182291253
OHVZ01000626
[OHVZ] human gut metagenome; feces
308
234
-
Gln
TTG
[ENA]
¢þ
>WENV182509788
OIWK01000088
[OIWK] human gut metagenome; faeces
49022
48948
-
Gln
TTG
[ENA]
¢þ
>WENV182523853
OIWS01065868
[OIWS] human gut metagenome; faeces
306
380
+
Gln
TTG
[ENA]
¢þ
>WENV182535552
OIXG01044240
[OIXG] human gut metagenome; faeces
772
698
-
Gln
TTG
[ENA]
¢þ
>WENV182536678
OIXH01001265
[OIXH] human gut metagenome; faeces
18058
17984
-
Gln
TTG
[ENA]
¢þ
>WENV182596045
OJIY01000457
[OJIY] metagenome; faeces
7219
7145
-
Gln
TTG
[ENA]
¢þ
>WENV182711308
OJPD01020781
[OJPD] human gut metagenome; stool sample
834
760
-
Gln
TTG
[ENA]
¢þ
>WENV182720317
OJPN01007193
[OJPN] human gut metagenome; stool sample
3362
3288
-
Gln
TTG
[ENA]
¢þ
>WENV182727753
OJPW01000160
[OJPW] human gut metagenome; stool sample
48417
48491
+
Gln
TTG
[ENA]
¢þ
>WENV182731768
OJQA01004261
[OJQA] human gut metagenome; stool sample
737
811
+
Gln
TTG
[ENA]
¢þ
>WENV182740454
OJQL01016208
[OJQL] human gut metagenome; stool sample
115
41
-
Gln
TTG
[ENA]
¢þ
>WENV182869849
OKRT01032792
[OKRT] human gut metagenome; faeces
307
233
-
Gln
TTG
[ENA]
¢þ
>WENV182881091
OKSA01003546
[OKSA] human gut metagenome; faeces
9030
8956
-
Gln
TTG
[ENA]
¢þ
>WENV182882457
OKSB01000517
[OKSB] human gut metagenome; faeces
23682
23756
+
Gln
TTG
[ENA]
¢þ
>WENV182889110
OKSE01038063
[OKSE] human gut metagenome; faeces
376
450
+
Gln
TTG
[ENA]
¢þ
>WENV182891758
OKSH01003654
[OKSH] human gut metagenome; faeces
2281
2355
+
Gln
TTG
[ENA]
¢þ
>WENV183027083
OLFU01018688
[OLFU] human gut metagenome; faeces
460
534
+
Gln
TTG
[ENA]
¢þ
>WENV183028337
OLFV01001839
[OLFV] human gut metagenome; faeces
13515
13441
-
Gln
TTG
[ENA]
¢þ
>WENV183029865
OLFW01003886
[OLFW] human gut metagenome; faeces
1652
1578
-
Gln
TTG
[ENA]
¢þ
>WENV183032999
OLFY01001147
[OLFY] human gut metagenome; faeces
22498
22572
+
Gln
TTG
[ENA]
¢þ
>WENV183034375
OLFZ01000037
[OLFZ] human gut metagenome; faeces
101277
101351
+
Gln
TTG
[ENA]
¢þ
>WENV183037136
OLGA01008693
[OLGA] human gut metagenome; faeces
2366
2292
-
Gln
TTG
[ENA]
¢þ
>WENV183222768
OLQM01002918
[OLQM] human gut metagenome; faeces
5769
5695
-
Gln
TTG
[ENA]
¢þ
>WENV183258566
OLRN01010564
[OLRN] human gut metagenome; faeces
1683
1757
+
Gln
TTG
[ENA]
¢þ
>WENV183271136
OLRV01068445
[OLRV] human gut metagenome; faeces
646
720
+
Gln
TTG
[ENA]
¢þ
>WENV183324851
OLVY01069336
[OLVY] human gut metagenome; feces
255
181
-
Gln
TTG
[ENA]
¢þ
>WENV183339149
OLWK01015291
[OLWK] human gut metagenome; feces
1574
1500
-
Gln
TTG
[ENA]
¢þ
>WENV183340325
OLWL01007489
[OLWL] human gut metagenome; feces
3277
3351
+
Gln
TTG
[ENA]
¢þ
>WENV183354949
OLXC01024256
[OLXC] human gut metagenome; feces
855
781
-
Gln
TTG
[ENA]
¢þ
>WENV183360387
OLXI01017808
[OLXI] human gut metagenome; feces
411
337
-
Gln
TTG
[ENA]
¢þ
>WENV183453969
OMDE01028349
[OMDE] human gut metagenome; feces
244
318
+
Gln
TTG
[ENA]
¢þ
>WENV183492976
OMGI01002867
[OMGI] human gut metagenome; human gut
4037
3963
-
Gln
TTG
[ENA]
¢þ
>WENV183501263
OMGS01000007
[OMGS] human gut metagenome; human gut
110636
110562
-
Gln
TTG
[ENA]
¢þ
>WENV183540028
OOAJ01001621
[OOAJ] human gut metagenome; human gut
5020
4946
-
Gln
TTG
[ENA]
¢þ
>WENV183545526
OOAQ01005870
[OOAQ] human gut metagenome; human gut
3534
3608
+
Gln
TTG
[ENA]
¢þ
>WENV183570798
OOCD01011741
[OOCD] human gut metagenome; human gut
846
772
-
Gln
TTG
[ENA]
¢þ
>WENV183574091
OOCH01002613
[OOCH] human gut metagenome; human gut
9302
9376
+
Gln
TTG
[ENA]
¢þ
>WENV183575338
OOCI01001255
[OOCI] human gut metagenome; human gut
1774
1700
-
Gln
TTG
[ENA]
¢þ
>WENV183579270
OOCM01000460
[OOCM] human gut metagenome; human gut
29379
29453
+
Gln
TTG
[ENA]
¢þ
>WENV183583977
OOCQ01001086
[OOCQ] human gut metagenome; human gut
18126
18200
+
Gln
TTG
[ENA]
¢þ
>WENV183597767
OODF01004545
[OODF] human gut metagenome; human gut
1726
1800
+
Gln
TTG
[ENA]
¢þ
>WENV183600926
OODJ01000065
[OODJ] human gut metagenome; human gut
10946
10872
-
Gln
TTG
[ENA]
¢þ
>WENV183603688
OODL01000081
[OODL] human gut metagenome; human gut
104721
104795
+
Gln
TTG
[ENA]
¢þ
>WENV183632584
OOIF01007419
[OOIF] human gut metagenome; human gut
2094
2168
+
Gln
TTG
[ENA]
¢þ
>WENV183633933
OOIG01004557
[OOIG] human gut metagenome; human gut
3098
3024
-
Gln
TTG
[ENA]
¢þ
>WENV183776159
PPYF01083966
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1574
1500
-
Gln
TTG
[ENA]
¢þ
>WENV183787283
PPYF01319349
[PPYF] human gut metagenome; stool from patient with Crohn's disease
295
369
+
Gln
TTG
[ENA]
¢þ
>WENV183788806
PPYF01370465
[PPYF] human gut metagenome; stool from patient with Crohn's disease
24299
24373
+
Gln
TTG
[ENA]
¢þ
>WENV170026315
CDTW01033699
[CDTW] gut metagenome; human stools
728
654
-
Gln
TTG
[ENA]
¢þ
>WENV170028842
CDYF01019513
[CDYF] gut metagenome; human stools
707
633
-
Gln
TTG
[ENA]
¢þ
>WENV170032675
CDYK01009411
[CDYK] gut metagenome; human stools
525
599
+
Gln
TTG
[ENA]
¢þ
>WENV170035576
CDYM01023944
[CDYM] gut metagenome; human stools
300
374
+
Gln
TTG
[ENA]
¢þ
>WENV170057770
CDZG01050549
[CDZG] gut metagenome; human stools
7635
7709
+
Gln
TTG
[ENA]
¢þ
>WENV170059699
CDZH01057397
[CDZH] gut metagenome; human stools
7691
7765
+
Gln
TTG
[ENA]
¢þ
>WENV170061770
CDZI01063129
[CDZI] gut metagenome; human stools
588
662
+
Gln
TTG
[ENA]
¢þ
>WENV170071407
CDZQ01055815
[CDZQ] gut metagenome; human stools
8711
8785
+
Gln
TTG
[ENA]
¢þ
>WENV170074880
CDZT01012511
[CDZT] gut metagenome; human stools
29718
29792
+
Gln
TTG
[ENA]
¢þ
>WENV170077048
CDZU01019679
[CDZU] gut metagenome; human stools
10651
10725
+
Gln
TTG
[ENA]
¢þ
>WENV170078967
CDZV01044754
[CDZV] gut metagenome; human stools
7103
7177
+
Gln
TTG
[ENA]
¢þ
>WENV170089957
CEAF01025650
[CEAF] gut metagenome; human stools
238
164
-
Gln
TTG
[ENA]
¢þ
>WENV170093022
CEAH01008141
[CEAH] gut metagenome; human stools
128
54
-
Gln
TTG
[ENA]
¢þ
>C181001569
AP017368
Deltaproteobacteria
Candidatus Desulfovibrio trichonymphae Rs-N31 (AP017368)
402191
402117
-
Gln
TTG
-
¡û
>C181081073
CP023415
Deltaproteobacteria
Desulfovibrio sp. G11 (CP023415)
1337828
1337754
-
Gln
TTG
-
¡û
>C191149714
CP036295
Deltaproteobacteria
Desulfovibrio desulfuricans (CP036295)
1457890
1457816
-
Gln
TTG
-
¡û
>W09112367
ABXU01000029
Deltaproteobacteria
Desulfovibrio piger ATCC 29098 [ABXU]
85169
85095
-
Gln
TTG
[ENA]
¡û
>W09118224
ACCT01000003
Deltaproteobacteria
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
300406
300332
-
Gln
TTG
[ENA]
¡û
>C09103835
CP001358
Deltaproteobacteria
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1738928
1739002
+
Gln
TTG
[Ensembl]
¡û
>W1810792925
QRJJ01000002
Deltaproteobacteria
Desulfovibrio sp. AM18-2 (QRJJ)
146187
146261
+
Gln
TTG
[ENA]
¡û
>W10111700
ADDR01000116
Deltaproteobacteria
Desulfovibrio sp. 3_1_syn3 [ADDR]
28317
28391
+
Gln
TTG
[ENA]
¡û
>W11106993
ACWM01000014
Deltaproteobacteria
Desulfovibrio sp. 6_1_46AFAA [ACWM]
44569
44643
+
Gln
TTG
[ENA]
¡û
>W11114627
ADDR01000116
Deltaproteobacteria
Desulfovibrio sp. 3_1_syn3 [ADDR]
28317
28391
+
Gln
TTG
[ENA]
¡û
>C161069000
CP014229
Deltaproteobacteria
Desulfovibrio fairfieldensis CCUG 45958
1289480
1289406
-
Gln
TTG
[Ensembl]
¡û
>W1710515604
FNBX01000010
Deltaproteobacteria
Desulfovibrio legallii (FNBX)
7121
7047
-
Gln
TTG
[ENA]
¡û
>W1710579872
FPIW01000043
Deltaproteobacteria
Desulfovibrio desulfuricans (FPIW)
8896
8822
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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