This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407858 (113 seq.)
>W1710855570
LLYX01000002
Bacillota
Christensenella hongkongensis [LLYX]
122
196
+
Gly
GCC
[ENA]
¡û
>W1710855577
LLYX01000016
Bacillota
Christensenella hongkongensis [LLYX]
389
463
+
Gly
GCC
[ENA]
¡û
>W1710855596
LLYX01000038
Bacillota
Christensenella hongkongensis [LLYX]
4763
4689
-
Gly
GCC
[ENA]
¡û
>W1711089679
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
108728
108654
-
Gly
GCC
[ENA]
¡û
>W1711090956
LTBB01000001
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
138977
138903
-
Gly
GCC
[ENA]
¡û
>W1711178693
LWGY01000034
Bacillota
Christensenella minuta [LWGY]
37996
38070
+
Gly
GCC
[ENA]
¡û
>W1711178699
LWGY01000034
Bacillota
Christensenella minuta [LWGY]
146692
146766
+
Gly
GCC
[ENA]
¡û
>W1711302010
MAIQ01000009
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
47596
47670
+
Gly
GCC
[ENA]
¡û
>W1711302016
MAIQ01000011
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
1351
1277
-
Gly
GCC
[ENA]
¡û
>W1711302049
MAIR01000005
Bacillota
Christensenella minuta [MAIR]
110971
110897
-
Gly
GCC
[ENA]
¡û
>W1711302055
MAIR01000005
Bacillota
Christensenella minuta [MAIR]
2275
2201
-
Gly
GCC
[ENA]
¡û
>C171130796
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
2528196
2528122
-
Gly
GCC
-
¡û
>C171130802
LT700187
Bacillota
Christensenella massiliensis Marseille-P2438 [LT700187]
2438457
2438383
-
Gly
GCC
-
¡û
>WENV180239017
OBDA01164112
[OBDA] human gut metagenome; human gut
32
106
+
Gly
GCC
[ENA]
¢þ
>WENV180541272
OCHR01084624
[OCHR] human gut metagenome; human gut
260
186
-
Gly
GCC
[ENA]
¢þ
>WENV180543176
OCHT01079648
[OCHT] human gut metagenome; human gut
237
163
-
Gly
GCC
[ENA]
¢þ
>WENV180552640
OCJH01135994
[OCJH] human gut metagenome; human gut
220
146
-
Gly
GCC
[ENA]
¢þ
>WENV180650056
OCSK01278104
[OCSK] human gut metagenome; human gut
142
216
+
Gly
GCC
[ENA]
¢þ
>WENV180710423
ODFM01001344
[ODFM] human metagenome; G_DNA_Stool
3905
3831
-
Gly
GCC
[ENA]
¢þ
>WENV180772558
ODIH01121248
[ODIH] human metagenome; G_DNA_Stool
421
347
-
Gly
GCC
[ENA]
¢þ
>WENV180916107
ODTB01098616
[ODTB] human metagenome; G_DNA_Stool
120
194
+
Gly
GCC
[ENA]
¢þ
>WENV181053545
ODYI01000277
[ODYI] human metagenome; G_DNA_Stool
51259
51185
-
Gly
GCC
[ENA]
¢þ
>WENV181053952
ODYI01001126
[ODYI] human metagenome; G_DNA_Stool
24468
24542
+
Gly
GCC
[ENA]
¢þ
>WENV181089200
OEBA01015951
[OEBA] human metagenome; G_DNA_Stool
1420
1494
+
Gly
GCC
[ENA]
¢þ
>WENV181099747
OECI01010301
[OECI] human metagenome; G_DNA_Stool
778
704
-
Gly
GCC
[ENA]
¢þ
>WENV181239830
OFFD01010869
[OFFD] mouse gut metagenome; faeces
2161
2087
-
Gly
GCC
[ENA]
¢þ
>WENV181425856
OGCQ01001397
[OGCQ] human gut metagenome; human gut
8567
8493
-
Gly
GCC
[ENA]
¢þ
>WENV181510279
OGGQ01062556
[OGGQ] metagenome; Human gut stool
774
700
-
Gly
GCC
[ENA]
¢þ
>WENV181626373
OGML01021830
[OGML] metagenome; Human gut stool
995
921
-
Gly
GCC
[ENA]
¢þ
>WENV181661799
OGOG01007217
[OGOG] human gut metagenome; faeces
4273
4347
+
Gly
GCC
[ENA]
¢þ
>WENV181703647
OGPJ01019014
[OGPJ] human gut metagenome; faeces
2256
2182
-
Gly
GCC
[ENA]
¢þ
>WENV181742278
OGQK01025157
[OGQK] human gut metagenome; faeces
649
575
-
Gly
GCC
[ENA]
¢þ
>WENV181750518
OGQP01006086
[OGQP] human gut metagenome; faeces
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV181781360
OGRJ01048051
[OGRJ] human gut metagenome; faeces
353
279
-
Gly
GCC
[ENA]
¢þ
>WENV181803588
OGSD01025498
[OGSD] human gut metagenome; faeces
1579
1505
-
Gly
GCC
[ENA]
¢þ
>WENV181899074
OGXT01064605
[OGXT] human gut metagenome; faeces
559
485
-
Gly
GCC
[ENA]
¢þ
>WENV181938678
OGYW01028382
[OGYW] human gut metagenome; faeces
31
105
+
Gly
GCC
[ENA]
¢þ
>WENV182150838
OHLI01033928
[OHLI] human gut metagenome; feces
289
215
-
Gly
GCC
[ENA]
¢þ
>WENV182307703
OHXF01004026
[OHXF] human gut metagenome; feces
1315
1389
+
Gly
GCC
[ENA]
¢þ
>WENV182320772
OHYI01027611
[OHYI] human gut metagenome; feces
323
397
+
Gly
GCC
[ENA]
¢þ
>WENV182331417
OHZI01001832
[OHZI] human gut metagenome; feces
2372
2446
+
Gly
GCC
[ENA]
¢þ
>WENV182358103
OIBU01001311
[OIBU] human gut metagenome; feces
450
524
+
Gly
GCC
[ENA]
¢þ
>WENV182386887
OIDZ01005751
[OIDZ] human gut metagenome; feces
617
691
+
Gly
GCC
[ENA]
¢þ
>WENV182392631
OIEG01065101
[OIEG] human gut metagenome; human gut
423
497
+
Gly
GCC
[ENA]
¢þ
>WENV182531136
OIWV01037500
[OIWV] human gut metagenome; faeces
650
724
+
Gly
GCC
[ENA]
¢þ
>WENV182651636
OJMH01003116
[OJMH] human gut metagenome; feces
3829
3903
+
Gly
GCC
[ENA]
¢þ
>WENV182663290
OJMO01005892
[OJMO] human gut metagenome; feces
4070
4144
+
Gly
GCC
[ENA]
¢þ
>WENV182725003
OJPS01059753
[OJPS] human gut metagenome; stool sample
166
92
-
Gly
GCC
[ENA]
¢þ
>WENV182782062
OJSE01034934
[OJSE] human gut metagenome; human gut
902
976
+
Gly
GCC
[ENA]
¢þ
>WENV182874889
OKRW01054049
[OKRW] human gut metagenome; faeces
712
638
-
Gly
GCC
[ENA]
¢þ
>WENV183069142
OLIQ01078655
[OLIQ] metagenome; faeces
419
493
+
Gly
GCC
[ENA]
¢þ
>WENV183075848
OLIW01000601
[OLIW] human gut metagenome; feces
15301
15227
-
Gly
GCC
[ENA]
¢þ
>WENV183077033
OLIW01016630
[OLIW] human gut metagenome; feces
1974
1900
-
Gly
GCC
[ENA]
¢þ
>WENV183142758
OLOK01002662
[OLOK] human gut metagenome; faeces
8263
8337
+
Gly
GCC
[ENA]
¢þ
>WENV183154500
OLOR01005388
[OLOR] human gut metagenome; faeces
4865
4939
+
Gly
GCC
[ENA]
¢þ
>WENV183159448
OLOU01002880
[OLOU] human gut metagenome; faeces
124
50
-
Gly
GCC
[ENA]
¢þ
>WENV183162045
OLOV01043106
[OLOV] human gut metagenome; faeces
267
193
-
Gly
GCC
[ENA]
¢þ
>WENV183194393
OLPS01086039
[OLPS] human gut metagenome; faeces
579
505
-
Gly
GCC
[ENA]
¢þ
>WENV183196398
OLPU01000769
[OLPU] human gut metagenome; faeces
77
3
-
Gly
GCC
[ENA]
¢þ
>WENV183213108
OLQD01021839
[OLQD] human gut metagenome; faeces
760
834
+
Gly
GCC
[ENA]
¢þ
>WENV183252433
OLRI01001903
[OLRI] human gut metagenome; faeces
13267
13193
-
Gly
GCC
[ENA]
¢þ
>WENV183273492
OLRX01010544
[OLRX] human gut metagenome; faeces
1974
2048
+
Gly
GCC
[ENA]
¢þ
>WENV183286567
OLSE01020591
[OLSE] human gut metagenome; faeces
1202
1128
-
Gly
GCC
[ENA]
¢þ
>WENV183332766
OLWD01006250
[OLWD] human gut metagenome; feces
432
506
+
Gly
GCC
[ENA]
¢þ
>WENV183389171
OLZA01011323
[OLZA] human gut metagenome; feces
963
1037
+
Gly
GCC
[ENA]
¢þ
>WENV183390147
OLZB01009252
[OLZB] human gut metagenome; feces
1374
1300
-
Gly
GCC
[ENA]
¢þ
>WENV183420585
OMBA01009784
[OMBA] human gut metagenome; feces
166
92
-
Gly
GCC
[ENA]
¢þ
>WENV183425633
OMBK01044863
[OMBK] human gut metagenome; feces
124
50
-
Gly
GCC
[ENA]
¢þ
>WENV183435752
OMCA01056198
[OMCA] human gut metagenome; feces
149
75
-
Gly
GCC
[ENA]
¢þ
>WENV183488102
OMFY01003550
[OMFY] human gut metagenome; feces
1780
1851
+
Gly
GCC
[ENA]
¢þ
>WENV183634156
OOIG01010673
[OOIG] human gut metagenome; human gut
2424
2498
+
Gly
GCC
[ENA]
¢þ
>W141428460
JENX01000105
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
232
306
+
Gly
GCC
[ENA]
¡û
>WENV170562041
CZCB01000682
[CZCB] anaerobic digester metagenome; anaerobic digester
33864
33938
+
Gly
GCC
[ENA]
¢þ
>WENV170562046
CZCB01000682
[CZCB] anaerobic digester metagenome; anaerobic digester
57491
57565
+
Gly
GCC
[ENA]
¢þ
>WENV170562078
CZCB01000805
[CZCB] anaerobic digester metagenome; anaerobic digester
25574
25648
+
Gly
GCC
[ENA]
¢þ
>WENV170562184
CZCB01001319
[CZCB] anaerobic digester metagenome; anaerobic digester
105628
105554
-
Gly
GCC
[ENA]
¢þ
>WENV170684445
LFRM01039410
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9394
9320
-
Gly
GCC
[ENA]
¢þ
>WENV170687993
LFRM01220894
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
25579
25653
+
Gly
GCC
[ENA]
¢þ
>WENV170688230
LFRM01234812
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
15072
14998
-
Gly
GCC
[ENA]
¢þ
>WENV170691105
LFRM01380412
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
105646
105572
-
Gly
GCC
[ENA]
¢þ
>WENV170717980
LSQX01056949
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7145
7219
+
Gly
GCC
[ENA]
¢þ
>WENV170718032
LSQX01059035
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9010
9084
+
Gly
GCC
[ENA]
¢þ
>WENV170719289
LSQX01108969
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
112
38
-
Gly
GCC
[ENA]
¢þ
>C191063476
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
509529
509603
+
Gly
GCC
-
¡û
>C191063482
CP029256
Bacillota
Christensenella minuta DSM 22607 [CP029256]
618225
618299
+
Gly
GCC
-
¡û
>C191189879
LR026983
Bacillota
Maliibacterium massiliense Marseille-P3954 [LR026983]
2166464
2166538
+
Gly
GCC
-
¡û
>C191189899
LR026983
Bacillota
Maliibacterium massiliense Marseille-P3954 [LR026983]
157330
157256
-
Gly
GCC
-
¡û
>W1910637557
LQGW01000055
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
19467
19394
-
Gly
GCC
[ENA]
¡û
>W1810367370
PVXN01000004
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
27335
27261
-
Gly
GCC
[ENA]
¡û
>W1810579437
QEQN01000013
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
27515
27441
-
Gly
GCC
[ENA]
¡û
>W1510882361
JDSA01000191
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
232
306
+
Gly
GCC
[ENA]
¡û
>W1511585263
LAYJ01000029
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
31897
31971
+
Gly
GCC
[ENA]
¡û
>W1511585294
LAYJ01000123
Bacillota
Christensenella hongkongensis HKU16 [LAYJ]
59308
59234
-
Gly
GCC
[ENA]
¡û
>W1610501870
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
1620959
1621033
+
Gly
GCC
[ENA]
¡û
>W1610501877
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
2048776
2048850
+
Gly
GCC
[ENA]
¡û
>W1610606650
LFTC01000044
Bacillota
Clostridiales bacterium DTU083 [LFTC]
25579
25653
+
Gly
GCC
[ENA]
¡û
>W1610606672
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105646
105572
-
Gly
GCC
[ENA]
¡û
>W1610717951
LLYX01000002
Bacillota
Christensenella hongkongensis [LLYX]
122
196
+
Gly
GCC
[ENA]
¡û
>W1610717958
LLYX01000016
Bacillota
Christensenella hongkongensis [LLYX]
389
463
+
Gly
GCC
[ENA]
¡û
>W1610717977
LLYX01000038
Bacillota
Christensenella hongkongensis [LLYX]
4763
4689
-
Gly
GCC
[ENA]
¡û
>W1610924136
LSZW01000065
Bacillota
Christensenella minuta [LSZW]
108728
108654
-
Gly
GCC
[ENA]
¡û
>W1610925155
LTBB01000001
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
138977
138903
-
Gly
GCC
[ENA]
¡û
>W1610986740
LWGY01000034
Bacillota
Christensenella minuta [LWGY]
37996
38070
+
Gly
GCC
[ENA]
¡û
>W1610986746
LWGY01000034
Bacillota
Christensenella minuta [LWGY]
146692
146766
+
Gly
GCC
[ENA]
¡û
>W1611052798
MAIQ01000009
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
47596
47670
+
Gly
GCC
[ENA]
¡û
>W1611052804
MAIQ01000011
Bacillota
Christensenella intestinihominis AF73-05CM02 [MAIQ]
1351
1277
-
Gly
GCC
[ENA]
¡û
>W1611052837
MAIR01000005
Bacillota
Christensenella minuta [MAIR]
110971
110897
-
Gly
GCC
[ENA]
¡û
>W1611052843
MAIR01000005
Bacillota
Christensenella minuta [MAIR]
2275
2201
-
Gly
GCC
[ENA]
¡û
>W1710495340
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
1620959
1621033
+
Gly
GCC
[ENA]
¡û
>W1710495347
FLKP01000002
Bacillota
Christensenella timonensis Marseille-P2437 [FLKP]
2048776
2048850
+
Gly
GCC
[ENA]
¡û
>W1710570826
FOVK01000004
Bacillota
Proteiniclasticum ruminis [FOVK]
15306
15232
-
Gly
GCC
[ENA]
¡û
>W1710727937
LFTC01000044
Bacillota
Clostridiales bacterium DTU083 [LFTC]
25579
25653
+
Gly
GCC
[ENA]
¡û
>W1710727959
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105646
105572
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK