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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407933 (39 seq.)
>WENV180110536
OAPN01000399
[OAPN] marine metagenome; 2011
2027
2099
+
Val
GAC
[ENA]
¢þ
>WENV181369777
OFQR01000046
[OFQR] freshwater metagenome; Freshwater Lake
16223
16295
+
Val
GAC
[ENA]
¢þ
>WENV181370291
OFQS01002412
[OFQS] freshwater metagenome; Freshwater Lake
1572
1500
-
Val
GAC
[ENA]
¢þ
>WENV181370419
OFQS01010174
[OFQS] freshwater metagenome; Freshwater Lake
776
704
-
Val
GAC
[ENA]
¢þ
>WENV181835762
OGVI01017181
[OGVI] freshwater metagenome; freshwater
327
399
+
Val
GAC
[ENA]
¢þ
>WENV181838763
OGVN01016557
[OGVN] freshwater metagenome; freshwater
428
500
+
Val
GAC
[ENA]
¢þ
>WENV181842685
OGVT01011119
[OGVT] freshwater metagenome; freshwater
448
376
-
Val
GAC
[ENA]
¢þ
>WENV181845732
OGVX01008220
[OGVX] freshwater metagenome; freshwater
503
431
-
Val
GAC
[ENA]
¢þ
>WENV181846123
OGVX01020914
[OGVX] freshwater metagenome; freshwater
159
87
-
Val
GAC
[ENA]
¢þ
>WENV181849508
OGWA01010286
[OGWA] freshwater metagenome; freshwater
282
354
+
Val
GAC
[ENA]
¢þ
>WENV181853436
OGWI01005649
[OGWI] freshwater metagenome; freshwater
219
291
+
Val
GAC
[ENA]
¢þ
>WENV181853559
OGWI01015077
[OGWI] freshwater metagenome; freshwater
511
583
+
Val
GAC
[ENA]
¢þ
>WENV001823
AACY020051829
Marine microbial communities from Global Ocean Sampling (GOS)
1914
1988
+
Val
GAC
[ENA]
>WENV001960
AACY020055187
Marine microbial communities from Global Ocean Sampling (GOS)
1838
1764
-
Val
GAC
[ENA]
>WENV170570448
FLOH01000004
[FLOH] marine metagenome; water
1628
1556
-
Val
GAC
[ENA]
¢þ
>WENV170572618
FLOH01001029
[FLOH] marine metagenome; water
1249
1175
-
Val
GAC
[ENA]
¢þ
>WENV170601549
FUWD010179068
[FUWD] metagenome; unknown
426
354
-
Val
GAC
[ENA]
¢þ
>WENV170602037
FUWD010211193
[FUWD] metagenome; unknown
147
73
-
Val
GAC
[ENA]
¢þ
>WENV170602854
FUWD010270708
[FUWD] metagenome; unknown
226
300
+
Val
GAC
[ENA]
¢þ
>WENV170618334
FUWD012963054
[FUWD] metagenome; unknown
76
4
-
Val
GAC
[ENA]
¢þ
>WENV170618943
FUWD012993010
[FUWD] metagenome; unknown
83
157
+
Val
GAC
[ENA]
¢þ
>WENV170625830
FUWD013206723
[FUWD] metagenome; unknown
966
1040
+
Val
GAC
[ENA]
¢þ
>WENV170634050
FUWD013408469
[FUWD] metagenome; unknown
966
1040
+
Val
GAC
[ENA]
¢þ
>C181020847
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
795532
795604
+
Val
GAC
-
¡û
>C181020884
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
746270
746342
+
Val
GAC
-
¡û
>C181021068
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
707544
707616
+
Val
GAC
-
¡û
>C181021142
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
732090
732162
+
Val
GAC
-
¡û
>C181021178
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
711907
711979
+
Val
GAC
-
¡û
>C181021256
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
756170
756242
+
Val
GAC
-
¡û
>C181021342
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
574659
574587
-
Val
GAC
-
¡û
>C181021369
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
767593
767665
+
Val
GAC
-
¡û
>WENV025940
AACY020926952
Marine microbial communities from Global Ocean Sampling (GOS)
319
245
-
Val
GAC
[ENA]
>WENV033882
AACY021562526
Marine microbial communities from Global Ocean Sampling (GOS)
210
284
+
Val
GAC
[ENA]
>WENV057263
AACY023289577
Marine microbial communities from Global Ocean Sampling (GOS)
1101
1175
+
Val
GAC
[ENA]
>WENV057937
AACY023312036
Marine microbial communities from Global Ocean Sampling (GOS)
571
497
-
Val
GAC
[ENA]
>WENV058269
AACY023323107
Marine microbial communities from Global Ocean Sampling (GOS)
853
927
+
Val
GAC
[ENA]
>WENV058282
AACY023323333
Marine microbial communities from Global Ocean Sampling (GOS)
419
493
+
Val
GAC
[ENA]
>WENV058883
AACY023345948
Marine microbial communities from Global Ocean Sampling (GOS)
652
578
-
Val
GAC
[ENA]
>WENV061248
AACY023427817
Marine microbial communities from Global Ocean Sampling (GOS)
167
241
+
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK