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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408037 (21 seq.)
>W1711228234
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320496
320570
+
Gln
TTG
[ENA]
¡û
>W1711228235
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320628
320702
+
Gln
TTG
[ENA]
¡û
>WENV181414308
OGCL01000200
[OGCL] hot springs metagenome; Hot spring water
28900
28974
+
Gln
TTG
[ENA]
¢þ
>WENV181837450
OGVK01046346
[OGVK] freshwater metagenome; freshwater
131
57
-
Gln
TTG
[ENA]
¢þ
>WENV181844631
OGVW01013490
[OGVW] freshwater metagenome; freshwater
292
218
-
Gln
TTG
[ENA]
¢þ
>WENV181844632
OGVW01013490
[OGVW] freshwater metagenome; freshwater
157
83
-
Gln
TTG
[ENA]
¢þ
>C191129079
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
3485492
3485566
+
Gln
TTG
-
¡û
>C191129080
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
3485626
3485700
+
Gln
TTG
-
¡û
>W141779374
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
98521
98595
+
Gln
TTG
[ENA]
¡û
>W141779375
JONU01000005
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
98654
98728
+
Gln
TTG
[ENA]
¡û
>W1511573492
LAMX01000025
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
94576
94502
-
Gln
TTG
[ENA]
¡û
>W1511584712
LAVS01000035
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
3164
3238
+
Gln
TTG
[ENA]
¡û
>W1511584713
LAVS01000035
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
3298
3372
+
Gln
TTG
[ENA]
¡û
>W11162896
AFHI01000030
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
10083
10009
-
Gln
TTG
[ENA]
¡û
>W11162897
AFHI01000030
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
9949
9875
-
Gln
TTG
[ENA]
¡û
>C161058511
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4456675
4456749
+
Gln
TTG
-
¡û
>C161058512
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
4456808
4456882
+
Gln
TTG
-
¡û
>C161058537
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2262825
2262751
-
Gln
TTG
-
¡û
>C161058538
CP013656
Gammaproteobacteria
Rheinheimera sp. F8 [CP013656]
2262692
2262618
-
Gln
TTG
-
¡û
>W1611012151
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320496
320570
+
Gln
TTG
[ENA]
¡û
>W1611012152
LXWK01000011
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
320628
320702
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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