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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408781 (87 seq.)
>C171131154
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2508213
2508139
-
Gln
TTG
-
¡û
>C171131162
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2507509
2507435
-
Gln
TTG
-
¡û
>C171131179
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2120318
2120244
-
Gln
TTG
-
¡û
>W131195025
ASRV01000161
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
419
345
-
Gln
TTG
[ENA]
¡û
>W131252517
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
1804800
1804726
-
Gln
TTG
[ENA]
¡û
>WENV180133210
OATI01015058
[OATI] human gut metagenome; faeces
253
179
-
Gln
TTG
[ENA]
¢þ
>WENV180137360
OATO01010645
[OATO] human gut metagenome; faeces
639
565
-
Gln
TTG
[ENA]
¢þ
>WENV180138263
OATP01034631
[OATP] human gut metagenome; faeces
183
109
-
Gln
TTG
[ENA]
¢þ
>WENV180177005
OAWD01014503
[OAWD] human gut metagenome; faeces
221
147
-
Gln
TTG
[ENA]
¢þ
>WENV180180647
OAWL01000193
[OAWL] human gut metagenome; faeces
5703
5629
-
Gln
TTG
[ENA]
¢þ
>WENV180415487
OBVE01000953
[OBVE] human gut metagenome; faeces
2799
2725
-
Gln
TTG
[ENA]
¢þ
>WENV180422324
OBVS01010161
[OBVS] human gut metagenome; faeces
165
239
+
Gln
TTG
[ENA]
¢þ
>WENV180489228
OBZR01046988
[OBZR] human gut metagenome; faeces
132
58
-
Gln
TTG
[ENA]
¢þ
>W141063508
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
28159
28233
+
Gln
TTG
[ENA]
¡û
>W141083147
AUPH01002095
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
426
500
+
Gln
TTG
[ENA]
¡û
>WENV181427002
OGCQ01023694
[OGCQ] human gut metagenome; human gut
145
219
+
Gln
TTG
[ENA]
¢þ
>WENV181805219
OGSH01003201
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1167
1241
+
Gln
TTG
[ENA]
¢þ
>WENV181805885
OGSJ01001216
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
143
217
+
Gln
TTG
[ENA]
¢þ
>WENV181811562
OGSY01009556
[OGSY] human gut metagenome; fecal sample 5 from infant 8
84
158
+
Gln
TTG
[ENA]
¢þ
>WENV182402224
OIES01001940
[OIES] human gut metagenome; human gut
448
374
-
Gln
TTG
[ENA]
¢þ
>WENV182613854
OJKA01024703
[OJKA] metagenome; faeces
96
170
+
Gln
TTG
[ENA]
¢þ
>WENV182798558
OJTK01000934
[OJTK] human gut metagenome; human gut
289
215
-
Gln
TTG
[ENA]
¢þ
>WENV182807197
OJVV01001610
[OJVV] human gut metagenome; human gut
1443
1369
-
Gln
TTG
[ENA]
¢þ
>WENV182813193
OJXZ01004306
[OJXZ] human gut metagenome; human gut
569
495
-
Gln
TTG
[ENA]
¢þ
>WENV182816574
OJZB01000414
[OJZB] human gut metagenome; human gut
2832
2758
-
Gln
TTG
[ENA]
¢þ
>WENV182820676
OKAO01003025
[OKAO] human gut metagenome; human gut
431
505
+
Gln
TTG
[ENA]
¢þ
>WENV182828072
OKDE01010571
[OKDE] human gut metagenome; human gut
57
131
+
Gln
TTG
[ENA]
¢þ
>WENV182830327
OKDX01007865
[OKDX] human gut metagenome; human gut
524
450
-
Gln
TTG
[ENA]
¢þ
>WENV182832917
OKEP01001199
[OKEP] human gut metagenome; human gut
968
1042
+
Gln
TTG
[ENA]
¢þ
>WENV182838340
OKGR01004418
[OKGR] human gut metagenome; human gut
671
597
-
Gln
TTG
[ENA]
¢þ
>WENV182838523
OKGS01003515
[OKGS] human gut metagenome; human gut
1872
1798
-
Gln
TTG
[ENA]
¢þ
>WENV182843226
OKIK01007276
[OKIK] human gut metagenome; human gut
59
133
+
Gln
TTG
[ENA]
¢þ
>WENV182849239
OKKO01004202
[OKKO] human gut metagenome; human gut
373
447
+
Gln
TTG
[ENA]
¢þ
>WENV182849703
OKKT01000809
[OKKT] human gut metagenome; human gut
715
789
+
Gln
TTG
[ENA]
¢þ
>WENV182849877
OKKU01001156
[OKKU] human gut metagenome; human gut
1026
1100
+
Gln
TTG
[ENA]
¢þ
>WENV182850930
OKLH01003116
[OKLH] human gut metagenome; human gut
142
216
+
Gln
TTG
[ENA]
¢þ
>WENV182855298
OKMY01004448
[OKMY] human gut metagenome; human gut
1066
992
-
Gln
TTG
[ENA]
¢þ
>WENV182862819
OKPP01005980
[OKPP] human gut metagenome; human gut
1183
1109
-
Gln
TTG
[ENA]
¢þ
>WENV182862826
OKPP01005980
[OKPP] human gut metagenome; human gut
587
513
-
Gln
TTG
[ENA]
¢þ
>WENV182863566
OKPT01008949
[OKPT] human gut metagenome; human gut
59
133
+
Gln
TTG
[ENA]
¢þ
>WENV182864790
OKQE01002880
[OKQE] human gut metagenome; human gut
59
133
+
Gln
TTG
[ENA]
¢þ
>WENV182952762
OKVW01017996
[OKVW] human gut metagenome; human gut
165
239
+
Gln
TTG
[ENA]
¢þ
>C181031733
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
116743
116817
+
Gln
TTG
-
¡û
>C181031741
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
117447
117521
+
Gln
TTG
-
¡û
>C181031758
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
504613
504687
+
Gln
TTG
-
¡û
>C181032005
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2705361
2705287
-
Gln
TTG
-
¡û
>C181032013
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2704657
2704583
-
Gln
TTG
-
¡û
>C181032030
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2317465
2317391
-
Gln
TTG
-
¡û
>C191025621
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2159182
2159256
+
Gln
TTG
-
¡û
>C191025629
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2159894
2159968
+
Gln
TTG
-
¡û
>C191025646
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2560491
2560565
+
Gln
TTG
-
¡û
>C191051270
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2504462
2504388
-
Gln
TTG
-
¡û
>C191051278
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2503758
2503684
-
Gln
TTG
-
¡û
>C191051295
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2116804
2116730
-
Gln
TTG
-
¡û
>C191123813
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
955791
955865
+
Gln
TTG
-
¡û
>C191123821
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
956503
956577
+
Gln
TTG
-
¡û
>C191123832
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
1371417
1371491
+
Gln
TTG
-
¡û
>W09118990
ACDK01000132
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
428
354
-
Gln
TTG
[ENA]
¡û
>W09133471
ACPD01000008
Bacillota
Clostridium cellulovorans 743B [ACPD]
3830
3756
-
Gln
TTG
[ENA]
¡û
>W1911491431
OAOE01000027
Bacillota
Clostridium tertium [OAOE]
50762
50836
+
Gln
TTG
[ENA]
¡û
>W1911493966
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4828
4754
-
Gln
TTG
[ENA]
¡û
>W1911493973
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4233
4159
-
Gln
TTG
[ENA]
¡û
>W1911493992
OBJV01000044
Bacillota
Clostridium tertium [OBJV]
270
196
-
Gln
TTG
[ENA]
¡û
>W1810470662
QAEJ01000101
Bacillota
Bacillus anthracis A155 [QAEJ]
560
634
+
Gln
TTG
[ENA]
¡û
>W1810604977
QGMU01000038
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
4263
4189
-
Gln
TTG
[ENA]
¡û
>W1810605039
QGMV01000018
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
429
355
-
Gln
TTG
[ENA]
¡û
>C10102822
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
3308998
3308924
-
Gln
TTG
[Ensembl]
¡û
>W1511595452
LBMX01000013
Bacillota
Clostridium sp. C8 [LBMX]
6409
6483
+
Gln
TTG
[ENA]
¡û
>W11184326
BABR01000354
Bacillota
Clostridium cellulovorans 743B [BABR]
3832
3758
-
Gln
TTG
[ENA]
¡û
>W1610501286
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24974
24900
-
Gln
TTG
[ENA]
¡û
>W1610501293
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24353
24279
-
Gln
TTG
[ENA]
¡û
>W1610501300
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23732
23658
-
Gln
TTG
[ENA]
¡û
>W1610501307
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23111
23037
-
Gln
TTG
[ENA]
¡û
>W1610501314
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22490
22416
-
Gln
TTG
[ENA]
¡û
>W1610501332
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
270
196
-
Gln
TTG
[ENA]
¡û
>W1610507700
FLTT01000001
Bacillota
Clostridium septicum [FLTT]
104161
104235
+
Gln
TTG
[ENA]
¡û
>W1610507744
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57530
57604
+
Gln
TTG
[ENA]
¡û
>W1610507752
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58242
58316
+
Gln
TTG
[ENA]
¡û
>W1710494756
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24974
24900
-
Gln
TTG
[ENA]
¡û
>W1710494763
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24353
24279
-
Gln
TTG
[ENA]
¡û
>W1710494770
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23732
23658
-
Gln
TTG
[ENA]
¡û
>W1710494777
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23111
23037
-
Gln
TTG
[ENA]
¡û
>W1710494784
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22490
22416
-
Gln
TTG
[ENA]
¡û
>W1710494802
FLKB01000019
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
270
196
-
Gln
TTG
[ENA]
¡û
>W1710499918
FLTT01000001
Bacillota
Clostridium septicum [FLTT]
104161
104235
+
Gln
TTG
[ENA]
¡û
>W1710499962
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57530
57604
+
Gln
TTG
[ENA]
¡û
>W1710499970
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58242
58316
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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