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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409321 (126 seq.)
>C171055707
CP017042
Bacillota
Selenomonas sp. oral taxon 920 W5150 [CP017042]
1824816
1824742
-
Glu
TTC
-
¡û
>W131002926
AGZT01000003
Bacillota
Selenomonas sp. F0473 [AGZT]
779648
779574
-
Glu
TTC
[ENA]
¡û
>W131228252
AUFU01000001
Bacillota
Selenomonas artemidis DSM 19719 [AUFU]
258482
258408
-
Glu
TTC
[ENA]
¡û
>WENV180198719
OBAD01005189
[OBAD] human gut metagenome; ENVO:feces
386
460
+
Glu
TTC
[ENA]
¢þ
>WENV180229746
OBCI01031673
[OBCI] human gut metagenome; human gut
117
43
-
Glu
TTC
[ENA]
¢þ
>WENV180231323
OBCN01010963
[OBCN] human gut metagenome; human gut
622
548
-
Glu
TTC
[ENA]
¢þ
>WENV180339171
OBLI01002577
[OBLI] pig gut metagenome; faeces
3535
3461
-
Glu
TTC
[ENA]
¢þ
>WENV180340232
OBLI01018323
[OBLI] pig gut metagenome; faeces
678
752
+
Glu
TTC
[ENA]
¢þ
>W141042552
AMEO01000100
Bacillota
Selenomonas sp. oral taxon 138 oral taxon 138 str. F0429 [AMEO]
114
40
-
Glu
TTC
[ENA]
¡û
>WENV180564868
OCLF01005169
[OCLF] human gut metagenome; human gut
393
467
+
Glu
TTC
[ENA]
¢þ
>WENV180623991
OCQG01045378
[OCQG] human oral metagenome; human oral
214
140
-
Glu
TTC
[ENA]
¢þ
>WENV180725609
ODGS01000435
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
229
155
-
Glu
TTC
[ENA]
¢þ
>WENV180728237
ODGU01032967
[ODGU] human metagenome; G_DNA_Supragingival plaque
71
-1
-
Glu
TTC
[ENA]
¢þ
>WENV180728399
ODGU01046388
[ODGU] human metagenome; G_DNA_Supragingival plaque
71
-1
-
Glu
TTC
[ENA]
¢þ
>WENV180729040
ODGU01167858
[ODGU] human metagenome; G_DNA_Supragingival plaque
307
378
+
Glu
TTC
[ENA]
¢þ
>WENV180729152
ODGU01221940
[ODGU] human metagenome; G_DNA_Supragingival plaque
217
288
+
Glu
TTC
[ENA]
¢þ
>WENV180735108
ODGZ01065569
[ODGZ] human metagenome; G_DNA_Supragingival plaque
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV180757369
ODHW01000274
[ODHW] human metagenome; G_DNA_Tongue dorsum
9300
9374
+
Glu
TTC
[ENA]
¢þ
>WENV180764844
ODIB01002176
[ODIB] human metagenome; G_DNA_Supragingival plaque
3123
3197
+
Glu
TTC
[ENA]
¢þ
>WENV180788540
ODIS01074546
[ODIS] human metagenome; G_DNA_Supragingival plaque
560
634
+
Glu
TTC
[ENA]
¢þ
>WENV180796840
ODJB01015727
[ODJB] human metagenome; G_DNA_Supragingival plaque
7
81
+
Glu
TTC
[ENA]
¢þ
>WENV180796856
ODJB01016457
[ODJB] human metagenome; G_DNA_Supragingival plaque
247
173
-
Glu
TTC
[ENA]
¢þ
>WENV180797055
ODJB01026715
[ODJB] human metagenome; G_DNA_Supragingival plaque
135
61
-
Glu
TTC
[ENA]
¢þ
>WENV180803143
ODJE01043907
[ODJE] human metagenome; G_DNA_Tongue dorsum
575
649
+
Glu
TTC
[ENA]
¢þ
>WENV180804379
ODJG01002253
[ODJG] human metagenome; G_DNA_Supragingival plaque
3082
3008
-
Glu
TTC
[ENA]
¢þ
>WENV180804861
ODJG01018420
[ODJG] human metagenome; G_DNA_Supragingival plaque
1458
1532
+
Glu
TTC
[ENA]
¢þ
>WENV180813141
ODJO01000052
[ODJO] human metagenome; G_DNA_Supragingival plaque
77925
77999
+
Glu
TTC
[ENA]
¢þ
>WENV180813299
ODJO01000311
[ODJO] human metagenome; G_DNA_Supragingival plaque
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180815670
ODJP01001116
[ODJP] human metagenome; G_DNA_Tongue dorsum
2096
2170
+
Glu
TTC
[ENA]
¢þ
>WENV180823435
ODJW01031653
[ODJW] human metagenome; G_DNA_Supragingival plaque
192
266
+
Glu
TTC
[ENA]
¢þ
>WENV180843850
ODKN01014547
[ODKN] human metagenome; G_DNA_Supragingival plaque
1364
1438
+
Glu
TTC
[ENA]
¢þ
>WENV180845673
ODKT01001500
[ODKT] human metagenome; G_DNA_Supragingival plaque
6581
6507
-
Glu
TTC
[ENA]
¢þ
>WENV180854246
ODKX01001682
[ODKX] human metagenome; G_DNA_Tongue dorsum
2652
2726
+
Glu
TTC
[ENA]
¢þ
>WENV180859439
ODLD01000694
[ODLD] human metagenome; G_DNA_Supragingival plaque
11927
12001
+
Glu
TTC
[ENA]
¢þ
>WENV180860421
ODLD01073299
[ODLD] human metagenome; G_DNA_Supragingival plaque
126
52
-
Glu
TTC
[ENA]
¢þ
>WENV180883289
ODMC01003488
[ODMC] human metagenome; G_DNA_Tongue dorsum
5374
5300
-
Glu
TTC
[ENA]
¢þ
>WENV180888447
ODMN01001008
[ODMN] human metagenome; G_DNA_Supragingival plaque
1340
1414
+
Glu
TTC
[ENA]
¢þ
>WENV180889259
ODMN01022698
[ODMN] human metagenome; G_DNA_Supragingival plaque
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180889579
ODMN01064700
[ODMN] human metagenome; G_DNA_Supragingival plaque
438
512
+
Glu
TTC
[ENA]
¢þ
>WENV180900685
ODOJ01006128
[ODOJ] human metagenome; G_DNA_Tongue dorsum
1361
1287
-
Glu
TTC
[ENA]
¢þ
>WENV180902650
ODOK01115561
[ODOK] human metagenome; G_DNA_Tongue dorsum
128
202
+
Glu
TTC
[ENA]
¢þ
>WENV180921436
ODTJ01000057
[ODTJ] human metagenome; G_DNA_Supragingival plaque
46243
46317
+
Glu
TTC
[ENA]
¢þ
>WENV180921590
ODTJ01000155
[ODTJ] human metagenome; G_DNA_Supragingival plaque
45098
45024
-
Glu
TTC
[ENA]
¢þ
>WENV180925168
ODTK01048995
[ODTK] human metagenome; G_DNA_Supragingival plaque
135
61
-
Glu
TTC
[ENA]
¢þ
>WENV180929565
ODTN01004939
[ODTN] human metagenome; G_DNA_Tongue dorsum
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV180932119
ODTP01025351
[ODTP] human metagenome; G_DNA_Tongue dorsum
325
399
+
Glu
TTC
[ENA]
¢þ
>WENV180945611
ODUC01268652
[ODUC] human metagenome; G_DNA_Supragingival plaque
109
35
-
Glu
TTC
[ENA]
¢þ
>WENV180949430
ODUG01016766
[ODUG] human metagenome; G_DNA_Tongue dorsum
160
86
-
Glu
TTC
[ENA]
¢þ
>WENV180964622
ODUO01007002
[ODUO] human metagenome; G_DNA_Supragingival plaque
980
906
-
Glu
TTC
[ENA]
¢þ
>WENV180974210
ODUW01130075
[ODUW] human metagenome; G_DNA_Supragingival plaque
165
239
+
Glu
TTC
[ENA]
¢þ
>WENV180975756
ODUY01018210
[ODUY] human metagenome; G_DNA_Supragingival plaque
639
713
+
Glu
TTC
[ENA]
¢þ
>WENV180976387
ODUY01096712
[ODUY] human metagenome; G_DNA_Supragingival plaque
489
563
+
Glu
TTC
[ENA]
¢þ
>WENV180981866
ODVE01077602
[ODVE] human metagenome; G_DNA_Supragingival plaque
213
139
-
Glu
TTC
[ENA]
¢þ
>WENV180982394
ODVF01000008
[ODVF] human metagenome; G_DNA_Supragingival plaque
32797
32723
-
Glu
TTC
[ENA]
¢þ
>WENV180998317
ODVT01000178
[ODVT] human metagenome; G_DNA_Buccal mucosa
30478
30404
-
Glu
TTC
[ENA]
¢þ
>WENV181000126
ODVT01234629
[ODVT] human metagenome; G_DNA_Buccal mucosa
84
158
+
Glu
TTC
[ENA]
¢þ
>WENV181003831
ODVX01039747
[ODVX] human metagenome; G_DNA_Supragingival plaque
735
661
-
Glu
TTC
[ENA]
¢þ
>WENV181009040
ODWE01025716
[ODWE] human metagenome; G_DNA_Supragingival plaque
251
177
-
Glu
TTC
[ENA]
¢þ
>WENV181019153
ODWU01000864
[ODWU] human metagenome; G_DNA_Supragingival plaque
14209
14283
+
Glu
TTC
[ENA]
¢þ
>WENV181032886
ODXN01001075
[ODXN] human metagenome; G_DNA_Tongue dorsum
9083
9009
-
Glu
TTC
[ENA]
¢þ
>WENV181038734
ODXQ01003984
[ODXQ] human metagenome; G_DNA_Tongue dorsum
6825
6899
+
Glu
TTC
[ENA]
¢þ
>WENV181046574
ODXW01076269
[ODXW] human metagenome; G_DNA_Tongue dorsum
106
180
+
Glu
TTC
[ENA]
¢þ
>WENV181063593
ODYP01001730
[ODYP] human metagenome; G_DNA_Supragingival plaque
240
166
-
Glu
TTC
[ENA]
¢þ
>WENV181065174
ODYP01323373
[ODYP] human metagenome; G_DNA_Supragingival plaque
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181076653
OEAP01009704
[OEAP] human metagenome; G_DNA_Supragingival plaque
2592
2518
-
Glu
TTC
[ENA]
¢þ
>WENV181079069
OEAS01001697
[OEAS] human metagenome; G_DNA_Supragingival plaque
10906
10980
+
Glu
TTC
[ENA]
¢þ
>WENV181079109
OEAS01002128
[OEAS] human metagenome; G_DNA_Supragingival plaque
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181079621
OEAS01010873
[OEAS] human metagenome; G_DNA_Supragingival plaque
2252
2326
+
Glu
TTC
[ENA]
¢þ
>WENV181079954
OEAS01020297
[OEAS] human metagenome; G_DNA_Supragingival plaque
972
1046
+
Glu
TTC
[ENA]
¢þ
>WENV181080619
OEAS01062984
[OEAS] human metagenome; G_DNA_Supragingival plaque
1131
1205
+
Glu
TTC
[ENA]
¢þ
>WENV181081206
OEAS01147472
[OEAS] human metagenome; G_DNA_Supragingival plaque
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV181084331
OEAV01149438
[OEAV] human metagenome; G_DNA_Supragingival plaque
30
104
+
Glu
TTC
[ENA]
¢þ
>WENV181087530
OEAY01059214
[OEAY] human metagenome; G_DNA_Tongue dorsum
9
83
+
Glu
TTC
[ENA]
¢þ
>WENV181094850
OEBY01001486
[OEBY] human metagenome; G_DNA_Tongue dorsum
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV181095415
OEBY01007955
[OEBY] human metagenome; G_DNA_Tongue dorsum
2059
1985
-
Glu
TTC
[ENA]
¢þ
>WENV181102530
OECT01004823
[OECT] human metagenome; G_DNA_Tongue dorsum
3088
3014
-
Glu
TTC
[ENA]
¢þ
>WENV181105722
OEED01012908
[OEED] human metagenome; G_DNA_Tongue dorsum
2245
2319
+
Glu
TTC
[ENA]
¢þ
>WENV181107638
OEEI01015038
[OEEI] human metagenome; G_DNA_Supragingival plaque
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV181121374
OEFL01003046
[OEFL] human metagenome; G_DNA_Supragingival plaque
4215
4141
-
Glu
TTC
[ENA]
¢þ
>WENV181136930
OEGI01146323
[OEGI] human metagenome; G_DNA_Supragingival plaque
111
37
-
Glu
TTC
[ENA]
¢þ
>WENV181142097
OEGT01079702
[OEGT] human metagenome; G_DNA_Throat
247
318
+
Glu
TTC
[ENA]
¢þ
>WENV181143793
OEHM01010753
[OEHM] human metagenome; G_DNA_Supragingival plaque
1459
1533
+
Glu
TTC
[ENA]
¢þ
>WENV181151852
OEHW01171229
[OEHW] human metagenome; G_DNA_Tongue dorsum
11
85
+
Glu
TTC
[ENA]
¢þ
>WENV181153142
OEIA01024257
[OEIA] human metagenome; G_DNA_Supragingival plaque
984
910
-
Glu
TTC
[ENA]
¢þ
>WENV181157468
OEIG01006959
[OEIG] human metagenome; G_DNA_Hard palate
1636
1710
+
Glu
TTC
[ENA]
¢þ
>WENV181175693
OEJQ01019926
[OEJQ] human metagenome; G_DNA_Tongue dorsum
868
794
-
Glu
TTC
[ENA]
¢þ
>WENV181179827
OEJT01020261
[OEJT] human metagenome; G_DNA_Supragingival plaque
1243
1317
+
Glu
TTC
[ENA]
¢þ
>W141146116
AWVG01000019
Bacillota
Selenomonas sp. oral taxon 892 oral taxon 892 str. F0426 [AWVG]
21600
21674
+
Glu
TTC
[ENA]
¡û
>WENV182510470
OIWK01002269
[OIWK] human gut metagenome; faeces
6012
6086
+
Glu
TTC
[ENA]
¢þ
>WENV183027831
OLFV01000440
[OLFV] human gut metagenome; faeces
660
734
+
Glu
TTC
[ENA]
¢þ
>WENV183028007
OLFV01000788
[OLFV] human gut metagenome; faeces
15887
15813
-
Glu
TTC
[ENA]
¢þ
>WENV183339269
OLWK01028146
[OLWK] human gut metagenome; feces
325
251
-
Glu
TTC
[ENA]
¢þ
>WENV183509474
OMHI01004636
[OMHI] human oral metagenome; human oral
17
91
+
Glu
TTC
[ENA]
¢þ
>WENV183510756
OMHQ01008352
[OMHQ] human oral metagenome; human oral
23
97
+
Glu
TTC
[ENA]
¢þ
>WENV183573234
OOCG01007482
[OOCG] human gut metagenome; human gut
834
908
+
Glu
TTC
[ENA]
¢þ
>WENV183641507
OQVL01048356
[OQVL] human gut metagenome; human gut
794
868
+
Glu
TTC
[ENA]
¢þ
>WENV183643356
OQVO01008858
[OQVO] human gut metagenome; human gut
1302
1376
+
Glu
TTC
[ENA]
¢þ
>WENV183644985
OQVQ01000396
[OQVQ] human gut metagenome; human gut
20177
20251
+
Glu
TTC
[ENA]
¢þ
>WENV183647277
OQVS01000199
[OQVS] human gut metagenome; human gut
20841
20915
+
Glu
TTC
[ENA]
¢þ
>WENV183649127
OQVS01112855
[OQVS] human gut metagenome; human gut
71
-1
-
Glu
TTC
[ENA]
¢þ
>WENV183650535
OQVT01026328
[OQVT] human gut metagenome; human gut
163
89
-
Glu
TTC
[ENA]
¢þ
>WENV183651169
OQVT01085739
[OQVT] human gut metagenome; human gut
819
890
+
Glu
TTC
[ENA]
¢þ
>WENV183659728
OQWM01048034
[OQWM] human gut metagenome; human gut
217
143
-
Glu
TTC
[ENA]
¢þ
>WENV183788812
PPYF01370495
[PPYF] human gut metagenome; stool from patient with Crohn's disease
157
83
-
Glu
TTC
[ENA]
¢þ
>W141559536
JHWV01000002
Bacillota
Anaerovibrio sp. RM50 [JHWV]
151137
151063
-
Glu
TTC
[ENA]
¡û
>W141560959
JHYA01000010
Bacillota
Anaerovibrio lipolyticus LB2005 [JHYA]
15328
15254
-
Glu
TTC
[ENA]
¡û
>W09126919
ACKP02000012
Bacillota
Selenomonas sputigena ATCC 35185 [ACKP]
85696
85770
+
Glu
TTC
[ENA]
¡û
>W09127132
ACKT01000016
Bacillota
Selenomonas noxia ATCC 43541 [ACKT]
177478
177404
-
Glu
TTC
[ENA]
¡û
>W09127457
ACLA01000020
Bacillota
Selenomonas flueggei ATCC 43531 [ACLA]
190989
190915
-
Glu
TTC
[ENA]
¡û
>W1910503387
FYCJ01000019
Bacillota
Selenomonas felix Marseille-P3560 [FYCJ]
748552
748478
-
Glu
TTC
[ENA]
¡û
>W1911534750
OLMJ01000002
Bacillota
Selenomonas massiliensis Marseille-P4036 [OLMJ]
814427
814501
+
Glu
TTC
[ENA]
¡û
>C151090511
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
1385383
1385457
+
Glu
TTC
-
¡û
>W10127466
AEEJ01000035
Bacillota
Selenomonas sp. oral taxon 149 oral taxon 149 str. 67H29BP [AEEJ]
86145
86071
-
Glu
TTC
[ENA]
¡û
>W11300813
AECV01000017
Bacillota
Selenomonas artemidis F0399 [AECV]
41138
41212
+
Glu
TTC
[ENA]
¡û
>W1511362372
JSCE01000059
Bacillota
Anaerovibrio lipolyticus 5S [JSCE]
5709
5635
-
Glu
TTC
[ENA]
¡û
>C11121867
CP002637
Bacillota
Selenomonas sputigena ATCC 35185 [CP002637]
1667699
1667625
-
Glu
TTC
[Ensembl]
¡û
>W11134954
AEEJ01000035
Bacillota
Selenomonas sp. oral taxon 149 oral taxon 149 str. 67H29BP [AEEJ]
86145
86071
-
Glu
TTC
[ENA]
¡û
>W11163283
AFHQ01000057
Bacillota
Centipeda periodontii DSM 2778 [AFHQ]
19243
19169
-
Glu
TTC
[ENA]
¡û
>C161069294
CP014239
Bacillota
Selenomonas sp. oral taxon 136 F0591 [CP014239]
676133
676059
-
Glu
TTC
[Ensembl]
¡û
>C161094933
CP016201
Bacillota
Selenomonas sp. oral taxon 126 W7667 [CP016201]
1539741
1539815
+
Glu
TTC
[Ensembl]
¡û
>W121001400
ADGH01000003
Bacillota
Selenomonas noxia F0398 [ADGH]
254394
254320
-
Glu
TTC
[ENA]
¡û
>W121111693
ALJR01000003
Bacillota
Selenomonas sp. FOBRC9 [ALJR]
23724
23650
-
Glu
TTC
[ENA]
¡û
>W121112132
ALKG01000074
Bacillota
Selenomonas sp. FOBRC6 [ALKG]
114
40
-
Glu
TTC
[ENA]
¡û
>W121112634
ALNM01000009
Bacillota
Selenomonas sp. CM52 [ALNM]
37717
37791
+
Glu
TTC
[ENA]
¡û
>W1710011210
ANBM01000004
Bacillota
Anaerovibrio sp. JC8 [ANBM]
144052
143978
-
Glu
TTC
[ENA]
¡û
>W1710587829
FQYW01000004
Bacillota
Anaerovibrio lipolyticus DSM 3074 [FQYW]
150249
150175
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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