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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409542 (5 seq.)
>WENV182636771
OJLA01000055
[OJLA] metagenome; faeces
72785
72859
+
Sup
CTA
[ENA]
¢þ
>WENV183122957
OLNW01000127
[OLNW] human gut metagenome; faeces
65674
65600
-
Sup
CTA
[ENA]
¢þ
>WENV183253987
OLRJ01000667
[OLRJ] human gut metagenome; faeces
7653
7579
-
Sup
CTA
[ENA]
¢þ
>WENV183268465
OLRU01006403
[OLRU] human gut metagenome; faeces
4435
4361
-
Sup
CTA
[ENA]
¢þ
>WENV183784781
PPYF01267584
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32718
32792
+
Sup
CTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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