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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409749 (65 seq.)
>W1710912531
LNRR01000007
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
225501
225575
+
Glu
CTC
[ENA]
¡û
>W1710912616
LNRT01000007
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
225504
225578
+
Glu
CTC
[ENA]
¡û
>W1710913005
LNSC01000010
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
26259
26185
-
Glu
CTC
[ENA]
¡û
>W1710913046
LNSD01000002
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1710926886
LOET01000051
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
24828
24902
+
Glu
CTC
[ENA]
¡û
>W1711386972
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
198754
198680
-
Glu
TTC
[ENA]
¡û
>W1711386973
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
198650
198576
-
Glu
TTC
[ENA]
¡û
>W1711386974
MEGC01000002
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
198556
198482
-
Glu
CTC
[ENA]
¡û
>W131215035
ATUR01000002
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
336069
335995
-
Glu
CTC
[ENA]
¡û
>W1711505630
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554258
554184
-
Glu
TTC
[ENA]
¡û
>W1711505631
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554155
554081
-
Glu
TTC
[ENA]
¡û
>W1711505632
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
554051
553977
-
Glu
TTC
[ENA]
¡û
>W1711505633
MKVS01000026
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
553957
553883
-
Glu
CTC
[ENA]
¡û
>W1712105770
NISJ01000003
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
283646
283572
-
Glu
CTC
[ENA]
¡û
>C171049887
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2527331
2527257
-
Glu
CTC
-
¡û
>C171108870
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
2850952
2850878
-
Glu
CTC
-
¡û
>C171128420
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
3945344
3945418
+
Glu
CTC
-
¡û
>W131196350
ASTG01000010
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
43300
43374
+
Glu
CTC
[ENA]
¡û
>C014695
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2415412
2415486
+
Glu
CTC
[Ensembl]
¡û
>C019738
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
3155631
3155557
-
Glu
CTC
[Ensembl]
¡û
>WENV180101306
OAOU01022521
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
241
167
-
Glu
CTC
[ENA]
¢þ
>WENV170000154
AERA01018117
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
94
20
-
Glu
CTC
[ENA]
¢þ
>WENV170012079
APMI01117803
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1375
1301
-
Glu
CTC
[ENA]
¢þ
>WENV170176662
CEOS01107413
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
525
599
+
Glu
CTC
[ENA]
¢þ
>W141426753
JEMV01000057
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
23770
23696
-
Glu
CTC
[ENA]
¡û
>WENV170734429
LULK01005802
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
31
105
+
Glu
CTC
[ENA]
¢þ
>W141462314
JFHR01000037
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
18016
18090
+
Glu
CTC
[ENA]
¡û
>WENV170974130
MTKY01054443
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7605
7679
+
Glu
CTC
[ENA]
¢þ
>W141484935
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
180653
180579
-
Glu
CTC
[ENA]
¡û
>C181133073
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
4117381
4117307
-
Glu
CTC
-
¡û
>C181192068
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1633650
1633576
-
Glu
CTC
-
¡û
>C191002596
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
1941091
1941017
-
Glu
CTC
-
¡û
>C191095134
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
2512900
2512826
-
Glu
CTC
-
¡û
>C191185570
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
691002
690928
-
Glu
CTC
-
¡û
>W141808041
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
3055660
3055586
-
Glu
CTC
[ENA]
¡û
>W1910231947
FPEH01000012
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
155494
155420
-
Glu
CTC
[ENA]
¡û
>W1910744404
MIAM01000058
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
7683
7609
-
Glu
CTC
[ENA]
¡û
>W1911075015
NMUA01000020
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
15219
15145
-
Glu
CTC
[ENA]
¡û
>W1810676640
QKMD01000012
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
20279
20353
+
Glu
CTC
[ENA]
¡û
>C151086739
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
821424
821350
-
Glu
CTC
[Ensembl]
¡û
>W1510019772
BBXA01000033
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
143080
143154
+
Glu
CTC
[ENA]
¡û
>WENV11100512
AERA01018117
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
94
20
-
Glu
CTC
[ENA]
¡û
>C11116193
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2575579
2575505
-
Glu
CTC
[Ensembl]
¡û
>W1510757025
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
155879
155805
-
Glu
CTC
[ENA]
¡û
>W1511519407
JXZE01000006
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
83327
83401
+
Glu
CTC
[ENA]
¡û
>C161054540
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
2989007
2989081
+
Glu
CTC
[Ensembl]
¡û
>W1610071234
BCTX01000029
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
2663
2589
-
Glu
CTC
[ENA]
¡û
>W1610072003
BCUN01000002
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
190509
190583
+
Glu
CTC
[ENA]
¡û
>W1610076985
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141975
141901
-
Glu
TTC
[ENA]
¡û
>W1610076986
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141862
141788
-
Glu
CTC
[ENA]
¡û
>W121086733
AKKE01000108
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
3751
3825
+
Glu
CTC
[ENA]
¡û
>W121119257
ALVC01000568
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
191
117
-
Glu
CTC
[ENA]
¡û
>W1610535205
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
285737
285811
+
Glu
CTC
[ENA]
¡û
>W1610590994
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
128883
128957
+
Glu
CTC
[ENA]
¡û
>W1610770890
LNRR01000007
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
225501
225575
+
Glu
CTC
[ENA]
¡û
>W1610770975
LNRT01000007
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
225504
225578
+
Glu
CTC
[ENA]
¡û
>W1610771364
LNSC01000010
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
26259
26185
-
Glu
CTC
[ENA]
¡û
>W1610771405
LNSD01000002
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
466304
466230
-
Glu
CTC
[ENA]
¡û
>W1610784428
LOET01000051
Alphaproteobacteria
Sphingomonadales bacterium BRH_c3 [LOET]
24828
24902
+
Glu
CTC
[ENA]
¡û
>W1710068599
BCTX01000029
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
2663
2589
-
Glu
CTC
[ENA]
¡û
>W1710069205
BCUN01000002
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
190509
190583
+
Glu
CTC
[ENA]
¡û
>W1710074674
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141975
141901
-
Glu
TTC
[ENA]
¡û
>W1710074675
BCZE01000010
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
141862
141788
-
Glu
CTC
[ENA]
¡û
>W1710637674
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
285737
285811
+
Glu
CTC
[ENA]
¡û
>W1710710274
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
128883
128957
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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