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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409914 (18 seq.)
>A171003024
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
925751
925680
-
Ala
CGC
-
¡û
>A171004345
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1528796
1528868
+
Ala
CGC
-
¡û
>A171005403
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1827255
1827328
+
Ala
CGC
-
¡û
>A171005459
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1794240
1794313
+
Ala
CGC
-
¡û
>A171005600
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
1587970
1587898
-
Ala
CGC
-
¡û
>A171005615
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
1549995
1550067
+
Ala
CGC
-
¡û
>WENV180345825
OBLN01006905
[OBLN] sediment metagenome; sediment
1
72
+
Ala
CGC
[ENA]
¢þ
>WENV183513670
OMKS01006844
[OMKS] sediment metagenome; hot spring sediment
7415
7486
+
Ala
CGC
[ENA]
¢þ
>WENV170006536
AMWB02030293
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
274
345
+
Ala
CGC
[ENA]
¢þ
>WENV170007425
AMWB02121311
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
270
341
+
Ala
CGC
[ENA]
¢þ
>WENV170018688
BBPD01000345
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10927
10856
-
Ala
CGC
[ENA]
¢þ
>WENV170019968
BBPE01002000
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13120
13049
-
Ala
CGC
[ENA]
¢þ
>WENV170021205
BBPF01003966
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13410
13339
-
Ala
CGC
[ENA]
¢þ
>WENV170021873
BBPG01003797
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14925
14996
+
Ala
CGC
[ENA]
¢þ
>WENV170696098
LGVE01218728
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
103
29
-
Ala
CGC
[ENA]
¢þ
>W1910635256
LMVP01000268
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
19956
20029
+
Ala
CGC
[ENA]
¡û
>W1910655388
LZPK01000122
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3654
3582
-
Ala
CGC
[ENA]
¡û
>W1610048598
BBEF01000014
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
1551
1623
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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