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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411304 (16 seq.)
>C024115
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2520028
2520102
+
Asn
GTT
[Ensembl]
¡û
>WENV170661251
JXWU01142670
[JXWU] soil metagenome; rice field; organic control Plot
227
155
-
Asn
GTT
[ENA]
¢þ
>C181192104
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2572219
2572292
+
Asn
GTT
-
¡û
>C191072368
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
2725918
2725991
+
Asn
GTT
-
¡û
>C191072412
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2550176
2550249
+
Asn
GTT
-
¡û
>C191072458
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2655264
2655337
+
Asn
GTT
-
¡û
>C191072502
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2525804
2525877
+
Asn
GTT
-
¡û
>C191072547
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2587760
2587833
+
Asn
GTT
-
¡û
>W1910785984
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
509134
509062
-
Asn
GTT
[ENA]
¡û
>W1910870057
NCQX01000054
Rhodothermota
Salinibacter ruber SP273 [NCQX]
14023
13950
-
Asn
GTT
[ENA]
¡û
>W1910870087
NCQY01000011
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
95298
95224
-
Asn
GTT
[ENA]
¡û
>W1910870138
NCQZ01000029
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
351524
351450
-
Asn
GTT
[ENA]
¡û
>W1910870184
NCRA01000008
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
15838
15764
-
Asn
GTT
[ENA]
¡û
>W1910870243
NCRB01000076
Rhodothermota
Salinivenus iranica CB7 [NCRB]
8925
8850
-
Asn
GTT
[ENA]
¡û
>W1910870276
NCRC01000025
Rhodothermota
Salinivenus lutea DBO [NCRC]
8923
8848
-
Asn
GTT
[ENA]
¡û
>C131018234
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2598954
2599028
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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