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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411339 (22 seq.)
>W1710806610
LKBD01000007
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
46518
46592
+
Arg
CCG
[ENA]
¡û
>W1711334018
MBQA01000195
Gammaproteobacteria
Pseudoalteromonas sp. BMB [MBQA]
20699
20773
+
Arg
CCG
[ENA]
¡û
>W131180184
ARMY01000022
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
13453
13379
-
Arg
CCG
[ENA]
¡û
>C181010630
CP011039
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [CP011039, CP011040]
443570
443644
+
Arg
CCG
-
¡û
>C181053445
CP021646
Gammaproteobacteria
Pseudoalteromonas piscicida DE2-B [CP021646, CP021647]
3444508
3444434
-
Arg
CCG
-
¡û
>C181067322
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
3474533
3474459
-
Arg
CCG
-
¡û
>C191079783
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
643707
643781
+
Arg
CCG
-
¡û
>C191079916
CP031761
Gammaproteobacteria
Pseudoalteromonas piscicida DE2-A [CP031761, CP031762]
3444482
3444408
-
Arg
CCG
-
¡û
>W1910911218
NHNM01000012
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
13475
13401
-
Arg
CCG
[ENA]
¡û
>W1911698425
QNQN01000071
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
276435
276509
+
Arg
CCG
[ENA]
¡û
>W1810249354
PQCB01000006
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
635903
635829
-
Arg
CCG
[ENA]
¡û
>SRA1004840
SRR006906.159835
metagenomic water samples (SRP000427)
193
119
-
Arg
CCG
[SRA]
>SRA1004906
SRR006906.178157
metagenomic water samples (SRP000427)
192
118
-
Arg
CCG
[SRA]
>C151061234
CP009888
Gammaproteobacteria
Pseudoalteromonas piratica OCN003 [CP009888, CP009889]
1174314
1174388
+
Arg
CCG
[Ensembl]
¡û
>W1511479665
JWIH01000013
Gammaproteobacteria
Pseudoalteromonas flavipulchra ATCC 700519 [JWIH]
42130
42204
+
Arg
CCG
[ENA]
¡û
>W1511518125
JXXW01000061
Gammaproteobacteria
Pseudoalteromonas piscicida S2040 [JXXW]
1192
1118
-
Arg
CCG
[ENA]
¡û
>W1511518167
JXXX01000044
Gammaproteobacteria
Pseudoalteromonas piscicida S2724 [JXXX]
20819
20893
+
Arg
CCG
[ENA]
¡û
>W121025228
AHCC01000039
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
28631
28705
+
Arg
CCG
[ENA]
¡û
>W121025414
AHCE01000003
Gammaproteobacteria
Pseudoalteromonas spongiae UST010723-006 [AHCE]
300127
300053
-
Arg
CCG
[ENA]
¡û
>W121064775
AJMP01000043
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
29114
29188
+
Arg
CCG
[ENA]
¡û
>W121102512
AKXJ01000010
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
168654
168728
+
Arg
CCG
[ENA]
¡û
>W1610670384
LKBD01000007
Gammaproteobacteria
Pseudoalteromonas sp. P1-9 [LKBD]
46518
46592
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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