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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411361 (63 seq.)
>W1710863001
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1645861
1645787
-
Arg
CCG
[ENA]
¡û
>W1710873663
LMMY01000014
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
157825
157753
-
Arg
CCG
[ENA]
¡û
>W1710874317
LMNM01000002
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
158610
158538
-
Arg
CCG
[ENA]
¡û
>W1710880078
LMSC01000007
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
292132
292058
-
Arg
CCG
[ENA]
¡û
>W1710881155
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
628715
628787
+
Arg
CCG
[ENA]
¡û
>W1710881193
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
344031
343957
-
Arg
CCG
[ENA]
¡û
>W1711312326
MAST01000052
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
136974
136900
-
Arg
CCG
[ENA]
¡û
>W1711343513
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
2330282
2330354
+
Arg
CCG
[ENA]
¡û
>W1711343609
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
985025
985099
+
Arg
CCG
[ENA]
¡û
>W1711388715
MEIA01000479
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
26129
26057
-
Arg
CCG
[ENA]
¡û
>W1711499943
MKQR01000025
Actinomycetota
Actinokineospora bangkokensis [MKQR]
49496
49568
+
Arg
CCG
[ENA]
¡û
>W1711749164
MUMH01000041
Actinomycetota
Allokutzneria sp. NRRL B-24872 [MUMH]
40433
40505
+
Arg
CCG
[ENA]
¡û
>W131169290
AREQ01000005
Actinomycetota
Salinispora arenicola CNT849 [AREQ]
15044
15116
+
Arg
CCG
[ENA]
¡û
>W131171528
ARGG01000059
Actinomycetota
Salinispora fenicalii CNR942 [ARGG]
111811
111885
+
Arg
CCG
[ENA]
¡û
>W131171703
ARGK01000093
Actinomycetota
Salinispora pacifica CNS996 [ARGK]
67627
67699
+
Arg
CCG
[ENA]
¡û
>W131172507
ARGY01000081
Actinomycetota
Salinispora arenicola CNP193 [ARGY]
330080
330008
-
Arg
CCG
[ENA]
¡û
>W131173017
ARHI01000098
Actinomycetota
Salinispora pacifica CNQ768 [ARHI]
67415
67489
+
Arg
CCG
[ENA]
¡û
>W131173199
ARHM01000060
Actinomycetota
Salinispora arenicola CNY237 [ARHM]
131527
131453
-
Arg
CCG
[ENA]
¡û
>W131177476
ARKU01000055
Actinomycetota
Salinispora arenicola CNY234 [ARKU]
15088
15160
+
Arg
CCG
[ENA]
¡û
>WENV180846533
ODKT01013885
[ODKT] human metagenome; G_DNA_Supragingival plaque
643
571
-
Arg
CCG
[ENA]
¢þ
>WENV181156536
OEIE01027526
[OEIE] human metagenome; G_DNA_Supragingival plaque
324
396
+
Arg
CCG
[ENA]
¢þ
>W141142488
AWQS01000077
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
10873
10799
-
Arg
CCG
[ENA]
¡û
>W141216773
AZVD01000007
Actinomycetota
Salinispora arenicola CNT799 [AZVD]
14974
15046
+
Arg
CCG
[ENA]
¡û
>W141218011
AZVZ01000001
Actinomycetota
Salinispora pacifica CNT131 [AZVZ]
309030
308958
-
Arg
CCG
[ENA]
¡û
>W141218314
AZWF01000006
Actinomycetota
Salinispora arenicola CNR921 [AZWF]
14969
15041
+
Arg
CCG
[ENA]
¡û
>W141218357
AZWG01000003
Actinomycetota
Salinispora arenicola CNT850 [AZWG]
14989
15061
+
Arg
CCG
[ENA]
¡û
>W141218721
AZWN01000007
Actinomycetota
Salinispora pacifica CNR894 [AZWN]
139763
139691
-
Arg
CCG
[ENA]
¡û
>WENV183092664
OLLI01000873
[OLLI] soil metagenome; soil
3023
3097
+
Arg
CCG
[ENA]
¢þ
>WENV183749070
PPFU01116169
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1239
1165
-
Arg
CCG
[ENA]
¢þ
>WENV170972966
MTKY01006538
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3914
3986
+
Arg
CCG
[ENA]
¢þ
>C181144026
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
2603511
2603585
+
Arg
CCG
-
¡û
>C191026479
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
7347792
7347864
+
Arg
CCG
-
¡û
>C191026823
CP024087
Actinomycetota
Micromonospora tulbaghiae CNY-010 [CP024087]
6744692
6744619
-
Arg
CCG
-
¡û
>C191120852
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
1937658
1937732
+
Arg
CCG
-
¡û
>C191130617
CP034766
Actinomycetota
Rhodococcus sp. X156 [CP034766]
2743297
2743370
+
Arg
CCG
-
¡û
>W141564793
JIBA01000014
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
445380
445454
+
Arg
CCG
[ENA]
¡û
>W141734594
JNLS01000004
Actinomycetota
Salinispora arenicola [JNLS]
67988
68060
+
Arg
CCG
[ENA]
¡û
>W141767741
JOEU01000024
Actinomycetota
Micromonospora purpureochromogenes [JOEU]
22203
22277
+
Arg
CCG
[ENA]
¡û
>W09127770
ACLF01000816
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
2097
2023
-
Arg
CCG
[ENA]
¡û
>W1910182922
BJNH01000022
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
11539
11611
+
Arg
CCG
[ENA]
¡û
>W1911492516
OBDY01000001
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
945188
945116
-
Arg
CCG
[ENA]
¡û
>W1911676366
QGTA01000284
Actinomycetota
Micromonospora chalcea LB41 [QGTA]
14646
14572
-
Arg
CCG
[ENA]
¡û
>W1810295979
PTIX01000017
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
37680
37752
+
Arg
CCG
[ENA]
¡û
>C151087186
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4266328
4266400
+
Arg
CCG
-
¡û
>C11114563
CP002399
Actinomycetota
Micromonospora sp. L5 [CP002399]
3297146
3297072
-
Arg
CCG
[Ensembl]
¡û
>C121007259
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
8275876
8275950
+
Arg
CCG
[Ensembl]
¡û
>W1610027102
AVPJ01000001
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
521477
521551
+
Arg
CCG
[ENA]
¡û
>W121055773
AIIH01002935
Actinomycetota
Salinispora pacifica CNT-133 [AIIH]
900
974
+
Arg
CCG
[ENA]
¡û
>W121055866
AIIJ01001565
Actinomycetota
Salinispora arenicola CNT-088 [AIIJ]
34
106
+
Arg
CCG
[ENA]
¡û
>W1610052481
BBHX01002139
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
363
289
-
Arg
CCG
[ENA]
¡û
>W1610052598
BBIB01000072
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
132
204
+
Arg
CCG
[ENA]
¡û
>C131015973
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
8083186
8083260
+
Arg
CCG
[Ensembl]
¡û
>W1610725347
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1645861
1645787
-
Arg
CCG
[ENA]
¡û
>W1610736009
LMMY01000014
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
157825
157753
-
Arg
CCG
[ENA]
¡û
>W1610736663
LMNM01000002
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
158610
158538
-
Arg
CCG
[ENA]
¡û
>W1610742424
LMSC01000007
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
292132
292058
-
Arg
CCG
[ENA]
¡û
>W1610743501
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
628715
628787
+
Arg
CCG
[ENA]
¡û
>W1610743539
LMSX01000001
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
344031
343957
-
Arg
CCG
[ENA]
¡û
>W1710023267
AVPJ01000001
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
521477
521551
+
Arg
CCG
[ENA]
¡û
>W1710048859
BBHX01002139
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
363
289
-
Arg
CCG
[ENA]
¡û
>W1710048976
BBIB01000072
Actinomycetota
Catenuloplanes nepalensis JCM 9536 [BBIB]
132
204
+
Arg
CCG
[ENA]
¡û
>W1710523587
FNIC01000007
Actinomycetota
Nocardioides szechwanensis [FNIC]
217078
217152
+
Arg
CCG
[ENA]
¡û
>W1710606866
FWYC01000020
Actinomycetota
Lentzea albidocapillata [FWYC]
75578
75504
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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