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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411599 (144 seq.)
>W1710822133
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
2085
2156
+
Gln
TTG
[ENA]
¡û
>W131145967
AQGL01000005
Actinomycetota
Bifidobacterium longum D2957 [AQGL]
30847
30776
-
Gln
TTG
[ENA]
¡û
>WENV180121779
OASS01000329
[OASS] human gut metagenome; faeces
6798
6869
+
Gln
TTG
[ENA]
¢þ
>WENV180136032
OATL01001704
[OATL] human gut metagenome; faeces
158
229
+
Gln
TTG
[ENA]
¢þ
>WENV180140743
OATU01000504
[OATU] human gut metagenome; faeces
8625
8554
-
Gln
TTG
[ENA]
¢þ
>WENV180141929
OATV01000176
[OATV] human gut metagenome; faeces
9513
9442
-
Gln
TTG
[ENA]
¢þ
>WENV180142559
OATW01000927
[OATW] human gut metagenome; faeces
3745
3816
+
Gln
TTG
[ENA]
¢þ
>WENV180145627
OAUC01010564
[OAUC] human gut metagenome; faeces
217
146
-
Gln
TTG
[ENA]
¢þ
>WENV180153033
OAUR01000233
[OAUR] human gut metagenome; faeces
2350
2279
-
Gln
TTG
[ENA]
¢þ
>WENV180154880
OAUU01000882
[OAUU] human gut metagenome; faeces
2351
2280
-
Gln
TTG
[ENA]
¢þ
>WENV180170053
OAVU01000458
[OAVU] human gut metagenome; faeces
2341
2270
-
Gln
TTG
[ENA]
¢þ
>WENV180171291
OAVW01000138
[OAVW] human gut metagenome; faeces
22936
23007
+
Gln
TTG
[ENA]
¢þ
>WENV180176935
OAWD01004958
[OAWD] human gut metagenome; faeces
1347
1418
+
Gln
TTG
[ENA]
¢þ
>WENV180177227
OAWE01000089
[OAWE] human gut metagenome; faeces
1503
1432
-
Gln
TTG
[ENA]
¢þ
>WENV180177731
OAWF01000489
[OAWF] human gut metagenome; faeces
8037
7966
-
Gln
TTG
[ENA]
¢þ
>WENV180179753
OAWJ01006283
[OAWJ] human gut metagenome; faeces
1607
1678
+
Gln
TTG
[ENA]
¢þ
>WENV180185559
OAWT01000500
[OAWT] human gut metagenome; faeces
827
756
-
Gln
TTG
[ENA]
¢þ
>WENV180185927
OAWU01000450
[OAWU] human gut metagenome; faeces
15990
16061
+
Gln
TTG
[ENA]
¢þ
>WENV180188529
OAWX01000229
[OAWX] human gut metagenome; faeces
28039
28110
+
Gln
TTG
[ENA]
¢þ
>WENV180195003
OAZY01000683
[OAZY] human gut metagenome; faeces
12930
12859
-
Gln
TTG
[ENA]
¢þ
>WENV180279355
OBHX01030529
[OBHX] metagenome; feces
1438
1509
+
Gln
TTG
[ENA]
¢þ
>WENV180349588
OBLO01067506
[OBLO] metagenome; feces
305
376
+
Gln
TTG
[ENA]
¢þ
>WENV180407107
OBUQ01000397
[OBUQ] human gut metagenome; faeces
11153
11082
-
Gln
TTG
[ENA]
¢þ
>WENV180409238
OBUU01000193
[OBUU] human gut metagenome; faeces
24421
24492
+
Gln
TTG
[ENA]
¢þ
>WENV180426672
OBVZ01000226
[OBVZ] human gut metagenome; faeces
39510
39581
+
Gln
TTG
[ENA]
¢þ
>WENV180428749
OBWC01001730
[OBWC] human gut metagenome; faeces
3733
3804
+
Gln
TTG
[ENA]
¢þ
>WENV180439047
OBWS01004863
[OBWS] human gut metagenome; faeces
1695
1766
+
Gln
TTG
[ENA]
¢þ
>WENV180443414
OBWY01007439
[OBWY] human gut metagenome; faeces
1311
1240
-
Gln
TTG
[ENA]
¢þ
>WENV180481107
OBZE01000526
[OBZE] human gut metagenome; faeces
1949
1878
-
Gln
TTG
[ENA]
¢þ
>WENV180481725
OBZF01000814
[OBZF] human gut metagenome; faeces
1949
1878
-
Gln
TTG
[ENA]
¢þ
>WENV180491279
OBZV01000782
[OBZV] human gut metagenome; faeces
6646
6717
+
Gln
TTG
[ENA]
¢þ
>WENV180492154
OBZW01000421
[OBZW] human gut metagenome; faeces
11697
11626
-
Gln
TTG
[ENA]
¢þ
>WENV180492760
OBZX01000697
[OBZX] human gut metagenome; faeces
3336
3407
+
Gln
TTG
[ENA]
¢þ
>WENV180493109
OBZY01000277
[OBZY] human gut metagenome; faeces
11875
11946
+
Gln
TTG
[ENA]
¢þ
>WENV180505754
OCAQ01004436
[OCAQ] human gut metagenome; faeces
992
1063
+
Gln
TTG
[ENA]
¢þ
>WENV180509070
OCAV01003190
[OCAV] human gut metagenome; faeces
5968
6039
+
Gln
TTG
[ENA]
¢þ
>WENV180612824
OCPX01005111
[OCPX] human gut metagenome; human gut
2308
2379
+
Gln
TTG
[ENA]
¢þ
>WENV180867459
ODLK01002000
[ODLK] human metagenome; G_DNA_Stool
2048
1977
-
Gln
TTG
[ENA]
¢þ
>WENV180965697
ODUP01004780
[ODUP] human metagenome; G_DNA_Stool
1678
1749
+
Gln
TTG
[ENA]
¢þ
>WENV181066335
ODZG01005067
[ODZG] human gut metagenome; human gut
117
188
+
Gln
TTG
[ENA]
¢þ
>WENV181104522
OEEA01013818
[OEEA] human gut metagenome; human gut
49
120
+
Gln
TTG
[ENA]
¢þ
>WENV181217007
OFCH01000019
[OFCH] metagenome; Human gut stool
50889
50818
-
Gln
TTG
[ENA]
¢þ
>WENV181220089
OFCQ01000055
[OFCQ] metagenome; Human gut stool
82110
82039
-
Gln
TTG
[ENA]
¢þ
>WENV181225727
OFDJ01000053
[OFDJ] metagenome; Human gut stool
59848
59777
-
Gln
TTG
[ENA]
¢þ
>WENV181566639
OGJJ01000030
[OGJJ] metagenome; Human gut stool
102704
102775
+
Gln
TTG
[ENA]
¢þ
>WENV181658952
OGOE01000865
[OGOE] human gut metagenome; faeces
20155
20226
+
Gln
TTG
[ENA]
¢þ
>WENV181661756
OGOG01006512
[OGOG] human gut metagenome; faeces
1013
1084
+
Gln
TTG
[ENA]
¢þ
>WENV181681080
OGOT01002600
[OGOT] human gut metagenome; faeces
2290
2219
-
Gln
TTG
[ENA]
¢þ
>WENV181701330
OGPH01000847
[OGPH] human gut metagenome; faeces
20825
20896
+
Gln
TTG
[ENA]
¢þ
>WENV181704887
OGPK01001388
[OGPK] human gut metagenome; faeces
3757
3828
+
Gln
TTG
[ENA]
¢þ
>WENV181714214
OGPR01000860
[OGPR] human gut metagenome; faeces
3701
3772
+
Gln
TTG
[ENA]
¢þ
>WENV181716028
OGPS01002004
[OGPS] human gut metagenome; faeces
11198
11127
-
Gln
TTG
[ENA]
¢þ
>WENV181722164
OGPV01028484
[OGPV] human gut metagenome; faeces
1352
1423
+
Gln
TTG
[ENA]
¢þ
>WENV181740858
OGQJ01030334
[OGQJ] human gut metagenome; faeces
181
110
-
Gln
TTG
[ENA]
¢þ
>WENV181758562
OGQU01001683
[OGQU] human gut metagenome; faeces
11237
11166
-
Gln
TTG
[ENA]
¢þ
>WENV181760242
OGQV01002851
[OGQV] human gut metagenome; faeces
8077
8006
-
Gln
TTG
[ENA]
¢þ
>WENV181761750
OGQW01006430
[OGQW] human gut metagenome; faeces
1865
1936
+
Gln
TTG
[ENA]
¢þ
>WENV181775319
OGRF01002079
[OGRF] human gut metagenome; faeces
742
671
-
Gln
TTG
[ENA]
¢þ
>WENV181784343
OGRL01075817
[OGRL] human gut metagenome; faeces
336
407
+
Gln
TTG
[ENA]
¢þ
>WENV181816513
OGTL01004196
[OGTL] human gut metagenome; faeces
7880
7951
+
Gln
TTG
[ENA]
¢þ
>WENV181871558
OGWZ01000270
[OGWZ] human gut metagenome; faeces
52515
52586
+
Gln
TTG
[ENA]
¢þ
>WENV181935643
OGYU01010289
[OGYU] human gut metagenome; faeces
1769
1840
+
Gln
TTG
[ENA]
¢þ
>WENV181937268
OGYV01038533
[OGYV] human gut metagenome; faeces
415
344
-
Gln
TTG
[ENA]
¢þ
>WENV181990528
OHAP01005296
[OHAP] human gut metagenome; faeces
3340
3411
+
Gln
TTG
[ENA]
¢þ
>WENV182065894
OHFB01000255
[OHFB] human gut metagenome; feces
14530
14459
-
Gln
TTG
[ENA]
¢þ
>WENV182078206
OHFY01003091
[OHFY] human gut metagenome; feces
1388
1317
-
Gln
TTG
[ENA]
¢þ
>WENV182141991
OHKT01024744
[OHKT] human gut metagenome; feces
143
72
-
Gln
TTG
[ENA]
¢þ
>WENV182188857
OHON01001934
[OHON] human gut metagenome; feces
4901
4830
-
Gln
TTG
[ENA]
¢þ
>WENV182224170
OHRB01000606
[OHRB] human gut metagenome; feces
11833
11904
+
Gln
TTG
[ENA]
¢þ
>WENV182225963
OHRE01000500
[OHRE] human gut metagenome; feces
14263
14192
-
Gln
TTG
[ENA]
¢þ
>WENV182246237
OHSL01003099
[OHSL] human gut metagenome; feces
1392
1321
-
Gln
TTG
[ENA]
¢þ
>WENV182268324
OHUB01000096
[OHUB] human gut metagenome; feces
12329
12258
-
Gln
TTG
[ENA]
¢þ
>WENV182402837
OIET01000117
[OIET] human gut metagenome; human gut
2045
1974
-
Gln
TTG
[ENA]
¢þ
>WENV182403912
OIEU01000678
[OIEU] human gut metagenome; human gut
6336
6407
+
Gln
TTG
[ENA]
¢þ
>WENV182404734
OIEV01000092
[OIEV] human gut metagenome; human gut
2094
2023
-
Gln
TTG
[ENA]
¢þ
>WENV182451650
OIMA01019916
[OIMA] human gut metagenome; human gut
382
453
+
Gln
TTG
[ENA]
¢þ
>WENV182758557
OJRI01007072
[OJRI] human gut metagenome; stool sample
725
796
+
Gln
TTG
[ENA]
¢þ
>WENV182805439
OJVE01000332
[OJVE] human gut metagenome; human gut
10405
10334
-
Gln
TTG
[ENA]
¢þ
>WENV182872373
OKRV01004717
[OKRV] human gut metagenome; faeces
4664
4735
+
Gln
TTG
[ENA]
¢þ
>WENV182908671
OKTG01002310
[OKTG] human gut metagenome; feces
1610
1539
-
Gln
TTG
[ENA]
¢þ
>WENV182941714
OKVG01005647
[OKVG] human gut metagenome; human gut
2624
2553
-
Gln
TTG
[ENA]
¢þ
>WENV182944179
OKVI01006511
[OKVI] human gut metagenome; human gut
1951
1880
-
Gln
TTG
[ENA]
¢þ
>WENV182954335
OKWA01000454
[OKWA] human gut metagenome; human gut
15069
15140
+
Gln
TTG
[ENA]
¢þ
>WENV183074094
OLIU01007702
[OLIU] human gut metagenome; stool sample
632
561
-
Gln
TTG
[ENA]
¢þ
>WENV183100758
OLNG01000351
[OLNG] human gut metagenome; faeces
9765
9694
-
Gln
TTG
[ENA]
¢þ
>WENV183117762
OLNS01000509
[OLNS] human gut metagenome; faeces
8842
8771
-
Gln
TTG
[ENA]
¢þ
>WENV183145654
OLOM01000592
[OLOM] human gut metagenome; faeces
2067
1996
-
Gln
TTG
[ENA]
¢þ
>WENV183181524
OLPI01009523
[OLPI] human gut metagenome; faeces
861
790
-
Gln
TTG
[ENA]
¢þ
>WENV183203144
OLPY01000303
[OLPY] human gut metagenome; faeces
41510
41581
+
Gln
TTG
[ENA]
¢þ
>WENV183205856
OLPZ01059064
[OLPZ] human gut metagenome; faeces
15
86
+
Gln
TTG
[ENA]
¢þ
>WENV183234592
OLQV01064821
[OLQV] human gut metagenome; faeces
298
369
+
Gln
TTG
[ENA]
¢þ
>WENV183240641
OLRA01012200
[OLRA] human gut metagenome; faeces
1853
1924
+
Gln
TTG
[ENA]
¢þ
>WENV183242842
OLRC01001717
[OLRC] human gut metagenome; faeces
4327
4398
+
Gln
TTG
[ENA]
¢þ
>WENV183294905
OLSL01000051
[OLSL] human gut metagenome; faeces
93588
93659
+
Gln
TTG
[ENA]
¢þ
>WENV183403506
OLZW01000293
[OLZW] human gut metagenome; feces
12738
12667
-
Gln
TTG
[ENA]
¢þ
>WENV183409940
OMAG01021064
[OMAG] human gut metagenome; feces
766
837
+
Gln
TTG
[ENA]
¢þ
>WENV183474361
OMET01025381
[OMET] human gut metagenome; feces
649
720
+
Gln
TTG
[ENA]
¢þ
>WENV183490866
OMGC01024359
[OMGC] human gut metagenome; feces
260
189
-
Gln
TTG
[ENA]
¢þ
>WENV183517758
OMNP01011619
[OMNP] human gut metagenome; feces
1077
1006
-
Gln
TTG
[ENA]
¢þ
>WENV183519086
OMNT01000113
[OMNT] human gut metagenome; faeces
71003
71074
+
Gln
TTG
[ENA]
¢þ
>WENV183552680
OOBJ01022415
[OOBJ] human gut metagenome; human gut
154
225
+
Gln
TTG
[ENA]
¢þ
>WENV183570766
OOCD01008816
[OOCD] human gut metagenome; human gut
313
242
-
Gln
TTG
[ENA]
¢þ
>WENV183781493
PPYF01196883
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5608
5679
+
Gln
TTG
[ENA]
¢þ
>W141524341
JGYZ01000003
Actinomycetota
Bifidobacterium longum subsp. longum [JGYZ]
162768
162697
-
Gln
TTG
[ENA]
¡û
>C191208475
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1466427
1466498
+
Gln
TTG
-
¡û
>C191209156
LR134369
Actinomycetota
Bifidobacterium longum NCTC11818 [LR134369]
1122354
1122283
-
Gln
TTG
-
¡û
>C09102385
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1466632
1466703
+
Gln
TTG
-
¡û
>W1910342772
FTRF01000032
Actinomycetota
Bifidobacterium longum [FTRF]
6804
6875
+
Gln
TTG
[ENA]
¡û
>W1910343137
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
41402
41473
+
Gln
TTG
[ENA]
¡û
>W1910343226
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
16557
16486
-
Gln
TTG
[ENA]
¡û
>W1910343440
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
18989
18918
-
Gln
TTG
[ENA]
¡û
>W1910952965
NJNR01000037
Actinomycetota
Bifidobacterium longum N6D05 [NJNR]
12185
12114
-
Gln
TTG
[ENA]
¡û
>W1810160630
PJDT01000033
Actinomycetota
Bifidobacterium longum APC1503 [PJDT]
13907
13836
-
Gln
TTG
[ENA]
¡û
>W1810161136
PJEC01000041
Actinomycetota
Bifidobacterium longum APC1466 [PJEC]
51644
51715
+
Gln
TTG
[ENA]
¡û
>W1810161201
PJED01000041
Actinomycetota
Bifidobacterium longum APC1465 [PJED]
33467
33538
+
Gln
TTG
[ENA]
¡û
>W1810813784
QRZU01000014
Actinomycetota
Bifidobacterium longum AF13-41 [QRZU]
30883
30812
-
Gln
TTG
[ENA]
¡û
>W1810814003
QRZY01000015
Actinomycetota
Bifidobacterium longum AF13-34 [QRZY]
3690
3761
+
Gln
TTG
[ENA]
¡û
>W1810814743
QSAM01000017
Actinomycetota
Bifidobacterium longum AF11-41 [QSAM]
2574
2645
+
Gln
TTG
[ENA]
¡û
>W1810815021
QSAR01000012
Actinomycetota
Bifidobacterium longum AF11-12 [QSAR]
17861
17790
-
Gln
TTG
[ENA]
¡û
>W1810815031
QSAR01000022
Actinomycetota
Bifidobacterium longum AF11-12 [QSAR]
17280
17209
-
Gln
TTG
[ENA]
¡û
>W1810815741
QSBF01000007
Actinomycetota
Bifidobacterium longum AF05-2 [QSBF]
125447
125376
-
Gln
TTG
[ENA]
¡û
>W1810815802
QSBG01000007
Actinomycetota
Bifidobacterium longum AF05-16 [QSBG]
36631
36702
+
Gln
TTG
[ENA]
¡û
>W1810833356
QSPR01000005
Actinomycetota
Bifidobacterium longum TM05-14 [QSPR]
12818
12747
-
Gln
TTG
[ENA]
¡û
>W1810836689
QSRZ01000006
Actinomycetota
Bifidobacterium longum TF06-45A [QSRZ]
176253
176324
+
Gln
TTG
[ENA]
¡û
>W1810837017
QSSF01000006
Actinomycetota
Bifidobacterium longum TF06-12AC [QSSF]
11875
11804
-
Gln
TTG
[ENA]
¡û
>W1510059602
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
6478
6549
+
Gln
TTG
[ENA]
¡û
>W1510059668
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
6607
6678
+
Gln
TTG
[ENA]
¡û
>W1510059735
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
5929
6000
+
Gln
TTG
[ENA]
¡û
>W1510059802
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
6606
6677
+
Gln
TTG
[ENA]
¡û
>W1510059868
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
41354
41425
+
Gln
TTG
[ENA]
¡û
>W1510059935
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
41382
41453
+
Gln
TTG
[ENA]
¡û
>W1510060002
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
41378
41449
+
Gln
TTG
[ENA]
¡û
>W1510060069
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
41350
41421
+
Gln
TTG
[ENA]
¡û
>C11103164
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1466423
1466494
+
Gln
TTG
-
¡û
>C11103231
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1466423
1466494
+
Gln
TTG
-
¡û
>C11103466
AP010888
Actinomycetota
Bifidobacterium longum subsp. longum JCM 1217 [AP010888]
1122354
1122283
-
Gln
TTG
[Ensembl]
¡û
>W1511357690
JRWN01000006
Actinomycetota
Bifidobacterium longum subsp. longum VMKB44 [JRWN]
53009
52938
-
Gln
TTG
[ENA]
¡û
>C161038265
CP011965
Actinomycetota
Bifidobacterium longum subsp. longum CCUG30698 [CP011965]
1189074
1189003
-
Gln
TTG
[Ensembl]
¡û
>W121067344
AJTF01000079
Actinomycetota
Bifidobacterium longum subsp. longum 1-6B [AJTF]
14335
14406
+
Gln
TTG
[ENA]
¡û
>W121067578
AJTJ01000139
Actinomycetota
Bifidobacterium longum subsp. longum 2-2B [AJTJ]
910
981
+
Gln
TTG
[ENA]
¡û
>W121067665
AJTM01000002
Actinomycetota
Bifidobacterium longum subsp. longum 44B [AJTM]
14105
14176
+
Gln
TTG
[ENA]
¡û
>W1610518911
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
44751
44680
-
Gln
TTG
[ENA]
¡û
>W1610686192
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
2085
2156
+
Gln
TTG
[ENA]
¡û
>W1710534455
FNRW01000002
Actinomycetota
Bifidobacterium longum [FNRW]
601663
601592
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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