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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411651 (24 seq.)
>W1711089351
LSZO01000058
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3813
3740
-
Cys
GCA
[ENA]
¡û
>WENV170672244
LAZR01000034
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
37530
37457
-
Cys
GCA
[ENA]
¢þ
>WENV170672307
LAZR01000057
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
123
196
+
Cys
GCA
[ENA]
¢þ
>WENV170684651
LFRM01050986
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
943
870
-
Cys
GCA
[ENA]
¢þ
>WENV170684873
LFRM01062457
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3064
2991
-
Cys
GCA
[ENA]
¢þ
>WENV170686185
LFRM01130443
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
29471
29398
-
Cys
GCA
[ENA]
¢þ
>WENV170704864
LLEN01004953
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
410
483
+
Cys
GCA
[ENA]
¢þ
>WENV170718179
LSQX01065149
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9074
9147
+
Cys
GCA
[ENA]
¢þ
>WENV170722626
LSQX01236095
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14376
14449
+
Cys
GCA
[ENA]
¢þ
>W141462341
JFHS01000001
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
1546516
1546443
-
Cys
GCA
[ENA]
¡û
>W1911568299
PCQD01000017
Gammaproteobacteria
Pseudomonas sp. MYb185 [PCQD]
34230
34157
-
Cys
GCA
[ENA]
¡û
>C151093931
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2253988
2253915
-
Cys
GCA
-
¡û
>C151093971
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1212830
1212903
+
Cys
GCA
-
¡û
>C151094048
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1048617
1048544
-
Cys
GCA
-
¡û
>C151094075
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
889160
889233
+
Cys
GCA
-
¡û
>C151094134
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
2098089
2098016
-
Cys
GCA
-
¡û
>C151094173
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
976323
976396
+
Cys
GCA
-
¡û
>C151094224
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
895229
895302
+
Cys
GCA
-
¡û
>C161041377
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1782018
1781945
-
Cys
GCA
[Ensembl]
¡û
>W1610605454
LFRZ01000038
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
29471
29398
-
Cys
GCA
[ENA]
¡û
>W1610923729
LSZO01000058
Gammaproteobacteria
Ventosimonas gracilis [LSZO]
3813
3740
-
Cys
GCA
[ENA]
¡û
>W1710552003
FOGN01000007
Gammaproteobacteria
Halopseudomonas bauzanensis [FOGN]
24547
24620
+
Cys
GCA
[ENA]
¡û
>W1710569020
FOUA01000007
Gammaproteobacteria
Halopseudomonas bauzanensis [FOUA]
24541
24614
+
Cys
GCA
[ENA]
¡û
>W1710726741
LFRZ01000038
Gammaproteobacteria
Gammaproteobacteria bacterium DTU037 [LFRZ]
29471
29398
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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