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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412073 (108 seq.)
>W1711143137
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
949439
949366
-
Cys
GCA
[ENA]
¡û
>W1711143166
LVHD01000198
Alphaproteobacteria
Acetobacter malorum [LVHD]
1418
1345
-
Cys
GCA
[ENA]
¡û
>W131176048
ARJS01000046
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
38807
38734
-
Cys
GCA
[ENA]
¡û
>W1711503698
MKTV01000056
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
102391
102318
-
Cys
GCA
[ENA]
¡û
>C171032905
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1575277
1575204
-
Cys
GCA
-
¡û
>C171032929
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1126453
1126526
+
Cys
GCA
-
¡û
>C171032973
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
428711
428784
+
Cys
GCA
-
¡û
>C171033068
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1543875
1543802
-
Cys
GCA
-
¡û
>C171033129
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
471532
471459
-
Cys
GCA
-
¡û
>C010058
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
2683429
2683356
-
Cys
GCA
[Ensembl]
¡û
>W141195273
AYTY01000147
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
216888
216961
+
Cys
GCA
[ENA]
¡û
>W141200331
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
317271
317344
+
Cys
GCA
[ENA]
¡û
>W141224546
BAIN01000001
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
152073
152146
+
Cys
GCA
[ENA]
¡û
>W141226095
BAJU01000001
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
244886
244959
+
Cys
GCA
[ENA]
¡û
>W141226201
BAJW01000022
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
15988
15915
-
Cys
GCA
[ENA]
¡û
>W141227246
BAKW01000003
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
76054
76127
+
Cys
GCA
[ENA]
¡û
>W141229576
BAND01000038
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
87985
88058
+
Cys
GCA
[ENA]
¡û
>W141247936
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
248928
248855
-
Cys
GCA
[ENA]
¡û
>WENV170669651
LAHS01001075
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
1252
1325
+
Cys
GCA
[ENA]
¢þ
>C181071372
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
2845460
2845533
+
Cys
GCA
-
¡û
>C181221206
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
2685881
2685808
-
Cys
GCA
-
¡û
>W141726097
JNAB01000023
Alphaproteobacteria
Kozakia baliensis [JNAB]
186045
186118
+
Cys
GCA
[ENA]
¡û
>W141775562
JOJU01000067
Alphaproteobacteria
Acetobacter malorum [JOJU]
948605
948532
-
Cys
GCA
[ENA]
¡û
>W1910181392
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
459086
459013
-
Cys
GCA
[ENA]
¡û
>W1910181865
BJMK01000004
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
41065
40992
-
Cys
GCA
[ENA]
¡û
>W1910182309
BJMU01000001
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
51757
51830
+
Cys
GCA
[ENA]
¡û
>W1910182352
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
468116
468189
+
Cys
GCA
[ENA]
¡û
>W1910183161
BJNM01000003
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
41549
41476
-
Cys
GCA
[ENA]
¡û
>W1910871840
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
11034
10961
-
Cys
GCA
[ENA]
¡û
>W1910872352
NDFO01000013
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
31991
32064
+
Cys
GCA
[ENA]
¡û
>W1910872397
NDFP01000012
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
31991
32064
+
Cys
GCA
[ENA]
¡û
>W1911410415
NWTP01000001
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
52037
52110
+
Cys
GCA
[ENA]
¡û
>W1911597829
PNQZ01000043
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
155948
156021
+
Cys
GCA
[ENA]
¡û
>W1810000610
BEWL01000006
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
100
173
+
Cys
GCA
[ENA]
¡û
>W1810000805
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
6665
6592
-
Cys
GCA
[ENA]
¡û
>W1810053971
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
472225
472298
+
Cys
GCA
[ENA]
¡û
>C151006196
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
2863641
2863568
-
Cys
GCA
[Ensembl]
¡û
>W1510011601
BBMU01000647
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
6536
6609
+
Cys
GCA
[ENA]
¡û
>W1511271197
JOKM01000102
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
230855
230928
+
Cys
GCA
[ENA]
¡û
>W11184384
BABS01000071
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
9900
9973
+
Cys
GCA
[ENA]
¡û
>W11184444
BABW01000012
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
6341
6414
+
Cys
GCA
[ENA]
¡û
>W11186881
CADS01000005
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
76736
76809
+
Cys
GCA
[ENA]
¡û
>C161001111
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1310017
1309944
-
Cys
GCA
[Ensembl]
¡û
>C161105526
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
3667061
3666988
-
Cys
GCA
[Ensembl]
¡û
>C161105564
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1671947
1672020
+
Cys
GCA
[Ensembl]
¡û
>W121016325
AGQV01000002
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
189385
189312
-
Cys
GCA
[ENA]
¡û
>W1610040764
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
21815
21742
-
Cys
GCA
[ENA]
¡û
>W1610040803
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
203210
203283
+
Cys
GCA
[ENA]
¡û
>W1610040881
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
164902
164829
-
Cys
GCA
[ENA]
¡û
>W1610040921
BAMZ01000016
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
51552
51479
-
Cys
GCA
[ENA]
¡û
>W1610623964
LHZA01000149
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
72764
72837
+
Cys
GCA
[ENA]
¡û
>W1610624051
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
195512
195439
-
Cys
GCA
[ENA]
¡û
>W1610624104
LHZC01000056
Alphaproteobacteria
Acetobacter malorum [LHZC]
74993
74920
-
Cys
GCA
[ENA]
¡û
>W1610624133
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
150238
150311
+
Cys
GCA
[ENA]
¡û
>W1610624196
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
240733
240806
+
Cys
GCA
[ENA]
¡û
>W1610624241
LHZF01000175
Alphaproteobacteria
Acetobacter malorum [LHZF]
89011
88938
-
Cys
GCA
[ENA]
¡û
>W1610624287
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
16137
16064
-
Cys
GCA
[ENA]
¡û
>W1610624343
LHZI01001282
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1202
1275
+
Cys
GCA
[ENA]
¡û
>W1610624503
LHZL01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
19505
19578
+
Cys
GCA
[ENA]
¡û
>W1610624575
LHZN01000117
Alphaproteobacteria
Gluconobacter albidus [LHZN]
141
214
+
Cys
GCA
[ENA]
¡û
>W1610624685
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
274373
274446
+
Cys
GCA
[ENA]
¡û
>W1610624719
LHZQ01000200
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
6512
6585
+
Cys
GCA
[ENA]
¡û
>W1610624783
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
6212
6139
-
Cys
GCA
[ENA]
¡û
>W1610624878
LHZT01000132
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
265816
265889
+
Cys
GCA
[ENA]
¡û
>W1610624906
LHZU01000136
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
37784
37711
-
Cys
GCA
[ENA]
¡û
>W1610624949
LHZV01000061
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
74149
74076
-
Cys
GCA
[ENA]
¡û
>W1610624993
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
245315
245388
+
Cys
GCA
[ENA]
¡û
>W1610625054
LHZX01000319
Alphaproteobacteria
Acetobacter malorum [LHZX]
53967
54040
+
Cys
GCA
[ENA]
¡û
>W1610625060
LHZY01000001
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
229064
228991
-
Cys
GCA
[ENA]
¡û
>W1610625118
LHZZ01000456
Alphaproteobacteria
Acetobacter malorum [LHZZ]
5074
5001
-
Cys
GCA
[ENA]
¡û
>W1610625184
LIAA01000049
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
25471
25544
+
Cys
GCA
[ENA]
¡û
>W1610954145
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
949439
949366
-
Cys
GCA
[ENA]
¡û
>W1610954174
LVHD01000198
Alphaproteobacteria
Acetobacter malorum [LVHD]
1418
1345
-
Cys
GCA
[ENA]
¡û
>W1710037962
BAMV01000018
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
21815
21742
-
Cys
GCA
[ENA]
¡û
>W1710038001
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
203210
203283
+
Cys
GCA
[ENA]
¡û
>W1710038079
BAMY01000021
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
164902
164829
-
Cys
GCA
[ENA]
¡û
>W1710038119
BAMZ01000016
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
51552
51479
-
Cys
GCA
[ENA]
¡û
>W1710624262
JOMM01000020
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
138465
138538
+
Cys
GCA
[ENA]
¡û
>W1710624389
JOMP01000011
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
579943
580016
+
Cys
GCA
[ENA]
¡û
>W1710624414
JOMQ01000005
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
76170
76243
+
Cys
GCA
[ENA]
¡û
>W1710624492
JOOZ01000014
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
52214
52287
+
Cys
GCA
[ENA]
¡û
>W1710624555
JOPA01000016
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
23549
23476
-
Cys
GCA
[ENA]
¡û
>W1710624627
JOPC01000016
Alphaproteobacteria
Acetobacter persici [JOPC]
29349
29422
+
Cys
GCA
[ENA]
¡û
>W1710624679
JOPD01000007
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
217581
217654
+
Cys
GCA
[ENA]
¡û
>W1710624719
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
168665
168592
-
Cys
GCA
[ENA]
¡û
>W1710624751
JOPG01000003
Alphaproteobacteria
Acetobacter malorum [JOPG]
23457
23384
-
Cys
GCA
[ENA]
¡û
>W1710624878
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
450254
450327
+
Cys
GCA
[ENA]
¡û
>W1710755082
LHZA01000149
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
72764
72837
+
Cys
GCA
[ENA]
¡û
>W1710755169
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
195512
195439
-
Cys
GCA
[ENA]
¡û
>W1710755222
LHZC01000056
Alphaproteobacteria
Acetobacter malorum [LHZC]
74993
74920
-
Cys
GCA
[ENA]
¡û
>W1710755251
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
150238
150311
+
Cys
GCA
[ENA]
¡û
>W1710755314
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
240733
240806
+
Cys
GCA
[ENA]
¡û
>W1710755359
LHZF01000175
Alphaproteobacteria
Acetobacter malorum [LHZF]
89011
88938
-
Cys
GCA
[ENA]
¡û
>W1710755405
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
16137
16064
-
Cys
GCA
[ENA]
¡û
>W1710755461
LHZI01001282
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
1202
1275
+
Cys
GCA
[ENA]
¡û
>W1710755621
LHZL01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
19505
19578
+
Cys
GCA
[ENA]
¡û
>W1710755693
LHZN01000117
Alphaproteobacteria
Gluconobacter albidus [LHZN]
141
214
+
Cys
GCA
[ENA]
¡û
>W1710755803
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
274373
274446
+
Cys
GCA
[ENA]
¡û
>W1710755837
LHZQ01000200
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
6512
6585
+
Cys
GCA
[ENA]
¡û
>W1710755901
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
6212
6139
-
Cys
GCA
[ENA]
¡û
>W1710755996
LHZT01000132
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
265816
265889
+
Cys
GCA
[ENA]
¡û
>W1710756024
LHZU01000136
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
37784
37711
-
Cys
GCA
[ENA]
¡û
>W1710756067
LHZV01000061
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
74149
74076
-
Cys
GCA
[ENA]
¡û
>W1710756111
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
245315
245388
+
Cys
GCA
[ENA]
¡û
>W1710756172
LHZX01000319
Alphaproteobacteria
Acetobacter malorum [LHZX]
53967
54040
+
Cys
GCA
[ENA]
¡û
>W1710756178
LHZY01000001
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
229064
228991
-
Cys
GCA
[ENA]
¡û
>W1710756236
LHZZ01000456
Alphaproteobacteria
Acetobacter malorum [LHZZ]
5074
5001
-
Cys
GCA
[ENA]
¡û
>W1710756302
LIAA01000049
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
25471
25544
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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