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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412086 (33 seq.)
>W1711081233
LSSA01000138
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
13396
13321
-
Lys
CTT
[ENA]
¡û
>W1711335746
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
166241
166313
+
Lys
CTT
[ENA]
¡û
>C001205
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
3123086
3123157
+
Lys
CTT
[Ensembl]
¡û
>C015293
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
6291864
6291935
+
Lys
CTT
[Ensembl]
¡û
>WENV180015341
FQKF010553144
[FQKF] soil metagenome; Soil
180
108
-
Lys
CTT
[ENA]
¢þ
>W141021269
AJLJ01000215
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
35346
35420
+
Lys
CTT
[ENA]
¡û
>w002287
AAAY02000047
Cyanobacteriota
Nostoc punctiforme [AAAY]
15929
16005
+
Lys
CTT
[ENA]
¡û
>W141038361
ALVT01000001
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
469704
469632
-
Lys
CTT
[ENA]
¡û
>W141038500
ALVX01000015
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
282144
282216
+
Lys
CTT
[ENA]
¡û
>C08006919
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
7572676
7572602
-
Lys
CTT
[Ensembl]
¡û
>WENV171003072
NNBT01000038
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
9895
9969
+
Lys
CTT
[ENA]
¢þ
>WENV171003424
NNBU01000008
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
30925
30997
+
Lys
CTT
[ENA]
¢þ
>WENV171003668
NNBV01000004
[NNBV] plant metagenome; symbiotic tissue sample KVS11
21833
21761
-
Lys
CTT
[ENA]
¢þ
>C181078442
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
2128428
2128356
-
Lys
CTT
-
¡û
>C181105267
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
2400545
2400473
-
Lys
CTT
-
¡û
>C181137745
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
7505216
7505144
-
Lys
CTT
-
¡û
>C181137856
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
430313
430241
-
Lys
CTT
-
¡û
>C191001243
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
3550595
3550667
+
Lys
CTT
-
¡û
>C191083067
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
1566279
1566207
-
Lys
CTT
-
¡û
>W09101172
AAEA01000039
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
14482
14554
+
Lys
CTT
[ENA]
¡û
>W1910008417
BDGE01000077
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
23773
23701
-
Lys
CTT
[ENA]
¡û
>W1910020532
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
3714802
3714730
-
Lys
CTT
[ENA]
¡û
>W1910646658
LWSY01000154
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
51937
51865
-
Lys
CTT
[ENA]
¡û
>W1911118663
NOLI01000077
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
25631
25559
-
Lys
CTT
[ENA]
¡û
>W1911118767
NOLJ01000016
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
14513
14441
-
Lys
CTT
[ENA]
¡û
>W1911118824
NOLK01000081
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
25636
25564
-
Lys
CTT
[ENA]
¡û
>W1911244266
NSHF01000121
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
15532
15604
+
Lys
CTT
[ENA]
¡û
>C161002541
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
522987
522913
-
Lys
CTT
[Ensembl]
¡û
>C161038875
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
2091400
2091472
+
Lys
CTT
[Ensembl]
¡û
>C131004158
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
5759600
5759528
-
Lys
CTT
[Ensembl]
¡û
>C131004935
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3964001
3963927
-
Lys
CTT
[Ensembl]
¡û
>W1610656806
LJOR01000044
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
33728
33656
-
Lys
CTT
[ENA]
¡û
>W1611066453
MBRD01000004
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
166241
166313
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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