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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412122 (81 seq.)
>W1710786212
LJIS01000127
Actinomycetota
Rhodococcus sp. ADH [LJIS]
195181
195254
+
Cys
GCA
[ENA]
¡û
>W1710889275
LNAK01000134
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
358194
358121
-
Cys
GCA
[ENA]
¡û
>W1710899254
LNIU01000011
Actinomycetota
Prescottella equi [LNIU]
531390
531317
-
Cys
GCA
[ENA]
¡û
>W1710909143
LNQH01000003
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
74212
74285
+
Cys
GCA
[ENA]
¡û
>W1710994890
LPZM01000016
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
235867
235940
+
Cys
GCA
[ENA]
¡û
>W131087829
AODN01000095
Actinomycetota
Rhodococcus qingshengii BKS 20-40 [AODN]
190306
190233
-
Cys
GCA
[ENA]
¡û
>W1711050256
LRRJ01000104
Actinomycetota
Rhodococcus qingshengii [LRRJ]
3054
2981
-
Cys
GCA
[ENA]
¡û
>W1711138353
LVCT01000266
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
4992
4919
-
Cys
GCA
[ENA]
¡û
>W1711168076
LVXC01000006
Actinomycetota
Rhodococcus qingshengii [LVXC]
629698
629771
+
Cys
GCA
[ENA]
¡û
>W1711179171
LWHK01000157
Actinomycetota
Rhodococcus sp. 1139 [LWHK]
74095
74168
+
Cys
GCA
[ENA]
¡û
>W1711252817
LYPG01000039
Actinomycetota
Rhodococcus erythropolis [LYPG]
73301
73372
+
Cys
GCA
[ENA]
¡û
>W1711252818
LYPG01000039
Actinomycetota
Rhodococcus erythropolis [LYPG]
246774
246703
-
Cys
GCA
[ENA]
¡û
>W1711261827
LYXB01000004
Actinomycetota
Rhodococcus qingshengii [LYXB]
236272
236199
-
Cys
GCA
[ENA]
¡û
>W1711351261
MDCH01000002
Actinomycetota
Rhodococcus erythropolis [MDCH]
767866
767795
-
Cys
GCA
[ENA]
¡û
>W1711475793
MJVD01000102
Actinomycetota
Rhodococcus erythropolis 1159 [MJVD]
204028
203957
-
Cys
GCA
[ENA]
¡û
>W1711518877
MLKO01000012
Actinomycetota
Rhodococcus erythropolis [MLKO]
83766
83695
-
Cys
GCA
[ENA]
¡û
>W1711577189
MNPP01000002
Actinomycetota
Rhodococcus sp. D-1 [MNPP]
492916
492989
+
Cys
GCA
[ENA]
¡û
>W1711666244
MRBQ01000004
Actinomycetota
Rhodococcus erythropolis [MRBQ]
73177
73250
+
Cys
GCA
[ENA]
¡û
>W1711705194
MSQF01000010
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
634088
634015
-
Cys
GCA
[ENA]
¡û
>W1711738391
MUBD01000004
Actinomycetota
Rhodococcus qingshengii [MUBD]
468314
468387
+
Cys
GCA
[ENA]
¡û
>W1711766915
MUZB01000012
Actinomycetota
Rhodococcus sp. 66b [MUZB]
194702
194631
-
Cys
GCA
[ENA]
¡û
>C171034436
CP014941
Actinomycetota
Rhodococcus sp. BH4 [CP014941]
2775651
2775578
-
Cys
GCA
-
¡û
>C171060543
CP017299
Actinomycetota
Rhodococcus sp. YL-1 [CP017299]
2734264
2734191
-
Cys
GCA
-
¡û
>WENV180354872
OBNE01026174
[OBNE] groundwater metagenome; groundwater
41804
41876
+
Cys
GCA
[ENA]
¢þ
>W141071745
ASJJ01000027
Actinomycetota
Rhodococcus rhodochrous ATCC 17895 [ASJJ]
82695
82624
-
Cys
GCA
[ENA]
¡û
>W141072033
ASKF01000004
Actinomycetota
Rhodococcus erythropolis R138 [ASKF]
2120176
2120105
-
Cys
GCA
[ENA]
¡û
>W141091865
AUZK01000014
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
103203
103132
-
Cys
GCA
[ENA]
¡û
>W141094436
AVCO01000026
Actinomycetota
Rhodococcus sp. P27 [AVCO]
80977
80906
-
Cys
GCA
[ENA]
¡û
>W141238672
BBLL01000197
Actinomycetota
Rhodococcus erythropolis [BBLL]
62351
62424
+
Cys
GCA
[ENA]
¡û
>WENV170762765
LUMW01036417
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
155
228
+
Cys
GCA
[ENA]
¢þ
>C181089293
CP023720
Actinomycetota
Rhodococcus sp. H-CA8f [CP023720]
3520927
3520998
+
Cys
GCA
-
¡û
>C181124613
CP025959
Actinomycetota
Rhodococcus qingshengii djl-6-2 [CP025959]
2912985
2912913
-
Cys
GCA
-
¡û
>C191120367
CP034152
Actinomycetota
Rhodococcus sp. NJ-530 [CP034152]
2819126
2819054
-
Cys
GCA
-
¡û
>W141727255
JNCU01000015
Actinomycetota
Rhodococcus qingshengii [JNCU]
95941
95868
-
Cys
GCA
[ENA]
¡û
>W09132165
ACNO01000032
Actinomycetota
Rhodococcus erythropolis SK121 [ACNO]
91958
92031
+
Cys
GCA
[ENA]
¡û
>W141773423
JOIL01000005
Actinomycetota
Rhodococcus erythropolis [JOIL]
73388
73461
+
Cys
GCA
[ENA]
¡û
>W141773474
JOIM01000003
Actinomycetota
Rhodococcus opacus [JOIM]
633463
633392
-
Cys
GCA
[ENA]
¡û
>W1910128911
BHXB01000001
Actinomycetota
Rhodococcus erythropolis JCM 3201 [BHXB]
2769873
2769802
-
Cys
GCA
[ENA]
¡û
>C09108749
AP008957
Actinomycetota
Rhodococcus erythropolis PR4 [AP008957]
2914380
2914309
-
Cys
GCA
[Ensembl]
¡û
>C141001852
CP003761
Actinomycetota
Rhodococcus erythropolis CCM2595 [CP003761]
2677458
2677387
-
Cys
GCA
[Ensembl]
¡û
>W1910637715
LQWU01000088
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
162900
162972
+
Cys
GCA
[ENA]
¡û
>W1910792733
MRCL01000007
Actinomycetota
Rhodococcus erythropolis ACN1 [MRCL]
163408
163480
+
Cys
GCA
[ENA]
¡û
>W1910910543
NHBD01000013
Actinomycetota
Rhodococcus erythropolis AV96 [NHBD]
73337
73408
+
Cys
GCA
[ENA]
¡û
>W1911136533
NOVD01000009
Actinomycetota
Rhodococcus qingshengii 23b-28 [NOVD]
175546
175617
+
Cys
GCA
[ENA]
¡û
>W1911647311
QAJJ01000028
Actinomycetota
Rhodococcus sp. KBW08 [QAJJ]
199365
199437
+
Cys
GCA
[ENA]
¡û
>W1810582436
QEUH01000016
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
73990
74061
+
Cys
GCA
[ENA]
¡û
>W1810870039
QUAI01000001
Actinomycetota
Rhodococcus erythropolis ATCC 15903 [QUAI]
1561908
1561980
+
Cys
GCA
[ENA]
¡û
>C151079152
CP011295
Actinomycetota
Rhodococcus erythropolis BG43 [CP011295]
2745365
2745294
-
Cys
GCA
[Ensembl]
¡û
>W1510115784
CFHW01000022
Actinomycetota
Rhodococcus sp. 311R [CFHW]
41198
41125
-
Cys
GCA
[ENA]
¡û
>W1511480851
JWJL01000212
Actinomycetota
Rhodococcus erythropolis S-43 [JWJL]
6638
6567
-
Cys
GCA
[ENA]
¡û
>W1511639808
LDPN01000097
Actinomycetota
Rhodococcus erythropolis CAS922i [LDPN]
312414
312341
-
Cys
GCA
[ENA]
¡û
>W1511656586
LEKE01000060
Actinomycetota
Rhodococcus sp. ARP2 [LEKE]
73409
73480
+
Cys
GCA
[ENA]
¡û
>W11178001
AGCF01000002
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
927168
927097
-
Cys
GCA
[ENA]
¡û
>C161005714
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
4201472
4201543
+
Cys
GCA
[Ensembl]
¡û
>C161045411
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
5136280
5136207
-
Cys
GCA
[Ensembl]
¡û
>W1610045440
BBBO01000032
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
28008
27935
-
Cys
GCA
[ENA]
¡û
>W1610048778
BBEK01000007
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
85791
85718
-
Cys
GCA
[ENA]
¡û
>W1610048828
BBEL01000012
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
80992
80919
-
Cys
GCA
[ENA]
¡û
>W1610050064
BBFM01000027
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
48866
48939
+
Cys
GCA
[ENA]
¡û
>W1610050461
BBFW01000088
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
3074
3001
-
Cys
GCA
[ENA]
¡û
>W1610068619
BCRM01000004
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
11524
11453
-
Cys
GCA
[ENA]
¡û
>W1610073977
BCWH01000003
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
607049
606976
-
Cys
GCA
[ENA]
¡û
>W1610515496
FMBB01000002
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
74212
74285
+
Cys
GCA
[ENA]
¡û
>W1610650018
LJIS01000127
Actinomycetota
Rhodococcus sp. ADH [LJIS]
195181
195254
+
Cys
GCA
[ENA]
¡û
>W1610749653
LNAK01000134
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
358194
358121
-
Cys
GCA
[ENA]
¡û
>W1610759658
LNIU01000011
Actinomycetota
Prescottella equi [LNIU]
531390
531317
-
Cys
GCA
[ENA]
¡û
>W1610767502
LNQH01000003
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
74212
74285
+
Cys
GCA
[ENA]
¡û
>W1610849547
LPZM01000016
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
235867
235940
+
Cys
GCA
[ENA]
¡û
>W1610891385
LRRJ01000104
Actinomycetota
Rhodococcus qingshengii [LRRJ]
3054
2981
-
Cys
GCA
[ENA]
¡û
>W1610949393
LVCT01000266
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
4992
4919
-
Cys
GCA
[ENA]
¡û
>W1610978083
LVXC01000006
Actinomycetota
Rhodococcus qingshengii [LVXC]
629698
629771
+
Cys
GCA
[ENA]
¡û
>W1611023802
LYXB01000004
Actinomycetota
Rhodococcus qingshengii [LYXB]
236272
236199
-
Cys
GCA
[ENA]
¡û
>W1710042281
BBBO01000032
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
28008
27935
-
Cys
GCA
[ENA]
¡û
>W1710045250
BBEK01000007
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
85791
85718
-
Cys
GCA
[ENA]
¡û
>W1710045300
BBEL01000012
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
80992
80919
-
Cys
GCA
[ENA]
¡û
>W1710046463
BBFM01000027
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
48866
48939
+
Cys
GCA
[ENA]
¡û
>W1710046860
BBFW01000088
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
3074
3001
-
Cys
GCA
[ENA]
¡û
>W1710065992
BCRM01000004
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
11524
11453
-
Cys
GCA
[ENA]
¡û
>W1710071095
BCWH01000003
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
607049
606976
-
Cys
GCA
[ENA]
¡û
>W1710501186
FMBB01000002
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
74212
74285
+
Cys
GCA
[ENA]
¡û
>W1710507193
FMVB01000007
Actinomycetota
Rhodococcus erythropolis 164Chir2E [FMVB]
73582
73653
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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