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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412127 (79 seq.)
>W1710867104
LMHZ01000056
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
62166
62239
+
Cys
GCA
[ENA]
¡û
>W1710893476
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
53676
53749
+
Cys
GCA
[ENA]
¡û
>W131046000
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
300505
300578
+
Cys
GCA
[ENA]
¡û
>W131046042
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
312558
312631
+
Cys
GCA
[ENA]
¡û
>W131062277
ANJR01000019
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
107788
107715
-
Cys
GCA
[ENA]
¡û
>W1711082099
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
617741
617668
-
Cys
GCA
[ENA]
¡û
>W1711413780
MGWU01000285
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
1631
1558
-
Cys
GCA
[ENA]
¡û
>W1711430716
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
780457
780530
+
Cys
GCA
[ENA]
¡û
>W1711583850
MNXT01000161
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_59_46 [MNXT]
4011
4083
+
Cys
GCA
[ENA]
¡û
>W1711765121
MUXB01000114
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
36261
36334
+
Cys
GCA
[ENA]
¡û
>W1712110252
NJGU01000001
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
650257
650184
-
Cys
GCA
[ENA]
¡û
>W1712110304
NJGV01000002
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
46852
46925
+
Cys
GCA
[ENA]
¡û
>C171021204
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2175463
2175536
+
Cys
GCA
-
¡û
>C171085392
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
1477556
1477483
-
Cys
GCA
-
¡û
>C171130531
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1073813
1073740
-
Cys
GCA
-
¡û
>C010378
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
1977634
1977561
-
Cys
GCA
[Ensembl]
¡û
>C011118
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1557818
1557891
+
Cys
GCA
[Ensembl]
¡û
>WENV180026839
FTIU01274563
[FTIU] metagenome; soil
358
285
-
Cys
GCA
[ENA]
¢þ
>WENV180029871
FTJL01010916
[FTJL] metagenome; soil
1
74
+
Cys
GCA
[ENA]
¢þ
>W141003854
AEEC02000091
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
160
87
-
Cys
GCA
[ENA]
¡û
>WENV180344810
OBLL01218842
[OBLL] soil metagenome; soil
233
160
-
Cys
GCA
[ENA]
¢þ
>WENV181401092
OFSF01054227
[OFSF] wastewater metagenome; Exp Tend VB 100WW
183
110
-
Cys
GCA
[ENA]
¢þ
>W141258878
CBXX010000001
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
154700
154627
-
Cys
GCA
[ENA]
¡û
>WENV183733695
PJTY01012043
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
60
133
+
Cys
GCA
[ENA]
¢þ
>WENV183735003
PJUA01000368
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
22517
22444
-
Cys
GCA
[ENA]
¢þ
>WENV183735905
PJUB01010133
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
206
133
-
Cys
GCA
[ENA]
¢þ
>WENV183735965
PJUB01020537
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
202
129
-
Cys
GCA
[ENA]
¢þ
>WENV183739200
PJUE01003051
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
649
576
-
Cys
GCA
[ENA]
¢þ
>WENV170559630
CXWL01134208
[CXWL] groundwater metagenome; biofilm material
3819
3746
-
Cys
GCA
[ENA]
¢þ
>WENV170559689
CXWL01137891
[CXWL] groundwater metagenome; biofilm material
1868
1795
-
Cys
GCA
[ENA]
¢þ
>WENV170639280
JFJP01001743
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
19952
19879
-
Cys
GCA
[ENA]
¢þ
>WENV170659827
JXWR01157161
[JXWR] soil metagenome; rice field; ambient CO2
370
443
+
Cys
GCA
[ENA]
¢þ
>WENV170709312
LNFM01000254
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
83773
83700
-
Cys
GCA
[ENA]
¢þ
>WENV170996203
MWWF01174886
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
253
180
-
Cys
GCA
[ENA]
¢þ
>C181071853
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
3692481
3692408
-
Cys
GCA
-
¡û
>C191029335
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
2134603
2134676
+
Cys
GCA
-
¡û
>C191124232
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
2068783
2068856
+
Cys
GCA
-
¡û
>C191125988
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245420
245347
-
Cys
GCA
-
¡û
>C191156618
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2218387
2218460
+
Cys
GCA
-
¡û
>C141000174
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
1304668
1304741
+
Cys
GCA
[Ensembl]
¡û
>W1910577841
JUGD01000004
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
170575
170502
-
Cys
GCA
[ENA]
¡û
>W1910578276
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
297120
297193
+
Cys
GCA
[ENA]
¡û
>W1910700102
MESE01000099
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
68758
68831
+
Cys
GCA
[ENA]
¡û
>W1911572372
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4292138
4292211
+
Cys
GCA
[ENA]
¡û
>W1911647618
QAJP01000008
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
155327
155254
-
Cys
GCA
[ENA]
¡û
>W1911802735
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2132194
2132267
+
Cys
GCA
[ENA]
¡û
>W1911802777
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1637958
1638031
+
Cys
GCA
[ENA]
¡û
>W1911802922
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
1519898
1519825
-
Cys
GCA
[ENA]
¡û
>W1810194050
PKOI01000016
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
67431
67504
+
Cys
GCA
[ENA]
¡û
>W1810273309
PSNY01000006
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [PSNY]
141954
141881
-
Cys
GCA
[ENA]
¡û
>W1810297209
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
1387769
1387842
+
Cys
GCA
[ENA]
¡û
>W1810399998
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2122876
2122803
-
Cys
GCA
[ENA]
¡û
>W1810659410
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
73446
73519
+
Cys
GCA
[ENA]
¡û
>W1810762750
QQAP01000004
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
291927
291854
-
Cys
GCA
[ENA]
¡û
>W1810887507
QUQN01000001
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
1378911
1378838
-
Cys
GCA
[ENA]
¡û
>C151062588
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1883451
1883524
+
Cys
GCA
[Ensembl]
¡û
>C151082355
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
2092096
2092169
+
Cys
GCA
-
¡û
>C151087567
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2200913
2200986
+
Cys
GCA
[Ensembl]
¡û
>C10107803
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2201213
2201286
+
Cys
GCA
[Ensembl]
¡û
>C11105088
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3393957
3393884
-
Cys
GCA
[Ensembl]
¡û
>W11143207
AEPR01000114
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
4612
4539
-
Cys
GCA
[ENA]
¡û
>W1511683792
LFLS01000044
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
2022
1949
-
Cys
GCA
[ENA]
¡û
>W1511683863
LFLU01000003
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
69628
69701
+
Cys
GCA
[ENA]
¡û
>C161053609
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3846119
3846046
-
Cys
GCA
[Ensembl]
¡û
>C161053631
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
1527621
1527694
+
Cys
GCA
-
¡û
>C161053679
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1735062
1735135
+
Cys
GCA
[Ensembl]
¡û
>C161053727
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527847
1527920
+
Cys
GCA
[Ensembl]
¡û
>C161053777
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
1833038
1833111
+
Cys
GCA
[Ensembl]
¡û
>C161060440
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
2119542
2119615
+
Cys
GCA
[Ensembl]
¡û
>W121068690
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
694790
694863
+
Cys
GCA
[ENA]
¡û
>W121086391
AKJW01000083
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
209665
209592
-
Cys
GCA
[ENA]
¡û
>W1610071823
BCUJ01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
77338
77411
+
Cys
GCA
[ENA]
¡û
>W1610729450
LMHZ01000056
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
62166
62239
+
Cys
GCA
[ENA]
¡û
>W1610753742
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
53676
53749
+
Cys
GCA
[ENA]
¡û
>W1710069025
BCUJ01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
77338
77411
+
Cys
GCA
[ENA]
¡û
>W1710530366
FNOR01000010
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
150748
150675
-
Cys
GCA
[ENA]
¡û
>W1710556444
FOKF01000007
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
92541
92468
-
Cys
GCA
[ENA]
¡û
>W1710557517
FOLC01000002
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
123178
123251
+
Cys
GCA
[ENA]
¡û
>W1710564235
FOQI01000015
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
128017
128090
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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