This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412193 (97 seq.)
>W1710859019
LMBV01000018
Bacillota
Peribacillus muralis [LMBV]
81077
81004
-
Trp
CCA
[ENA]
¡û
>W1710878990
LMRJ01000038
Bacillota
Bacillus sp. Leaf13 [LMRJ]
27101
27028
-
Trp
CCA
[ENA]
¡û
>W1710881263
LMSZ01000001
Bacillota
Bacillus sp. Soil745 [LMSZ]
6096
6169
+
Trp
CCA
[ENA]
¡û
>W1710881362
LMTA01000023
Bacillota
Bacillus sp. Soil768D1 [LMTA]
52652
52579
-
Trp
CCA
[ENA]
¡û
>W1710905523
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
29580
29507
-
Trp
CCA
[ENA]
¡û
>W131054152
ANAQ01000003
Bacillota
Heyndrickxia coagulans H-1 [ANAQ]
1332
1405
+
Trp
CCA
[ENA]
¡û
>W1711019853
LQYG01000112
Bacillota
Heyndrickxia coagulans [LQYG]
3529
3456
-
Trp
CCA
[ENA]
¡û
>W1711048288
LRPN01000121
Bacillota
Heyndrickxia coagulans [LRPN]
8106
8033
-
Trp
CCA
[ENA]
¡û
>W1711101888
LTNF01000064
Bacillota
Bacillus sp. HMSC76G11 [LTNF]
49
122
+
Trp
CCA
[ENA]
¡û
>W1711130525
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1807591
1807518
-
Trp
CCA
[ENA]
¡û
>W131172100
ARGR01000113
Bacillota
Bacillus sp. 105MF [ARGR]
95937
95865
-
Trp
CCA
[ENA]
¡û
>W1711182088
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
4006804
4006731
-
Trp
CCA
[ENA]
¡û
>W1711182243
LWJJ01000093
Bacillota
Peribacillus simplex [LWJJ]
4616
4689
+
Trp
CCA
[ENA]
¡û
>W1711737507
MUAQ01000011
Bacillota
Bacillus pseudomycoides [MUAQ]
111696
111624
-
Trp
CCA
[ENA]
¡û
>W1711795687
MWPX01000006
Bacillota
Bacillus pseudomycoides [MWPX]
99
172
+
Trp
CCA
[ENA]
¡û
>C171069020
CP017888
Bacillota
Heyndrickxia coagulans BC-HY1 [CP017888]
1903720
1903647
-
Trp
CCA
-
¡û
>WENV180101431
OAOU01060930
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
142
69
-
Trp
CCA
[ENA]
¢þ
>W141289213
JAQS01000006
Bacillota
Sporolactobacillus terrae HKM-1 [JAQS]
3441
3512
+
Trp
CCA
[ENA]
¡û
>C181027517
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
1822654
1822581
-
Trp
CCA
-
¡û
>W09130646
ACMV01000046
Bacillota
Bacillus pseudomycoides Rock1-4 [ACMV]
175
247
+
Trp
CCA
[ENA]
¡û
>W09130681
ACMV01000587
Bacillota
Bacillus pseudomycoides Rock1-4 [ACMV]
3589
3516
-
Trp
CCA
[ENA]
¡û
>C181194410
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
3216571
3216644
+
Trp
CCA
-
¡û
>W141520535
JGVU02000014
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
220
147
-
Trp
CCA
[ENA]
¡û
>C191071823
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
2504276
2504203
-
Trp
CCA
-
¡û
>C191098764
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
3437313
3437386
+
Trp
CCA
-
¡û
>C191098840
CP033044
Bacillota
Mesobacillus foraminis Bac44 [CP033044]
840288
840215
-
Trp
CCA
-
¡û
>C191138689
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
1885955
1885882
-
Trp
CCA
-
¡û
>W1910227960
FNMN01000003
Bacillota
Bacillus sp. ES3 [FNMN]
8408
8335
-
Trp
CCA
[ENA]
¡û
>W1910549414
FZPG01000014
Bacillota
Bacillus sp. OK838 [FZPG]
996
1069
+
Trp
CCA
[ENA]
¡û
>W1910755587
MKYS01000034
Bacillota
Peribacillus simplex 313 [MKYS]
1183
1256
+
Trp
CCA
[ENA]
¡û
>W1910871105
NCWW01000021
Bacillota
Peribacillus simplex OG2 [NCWW]
690
763
+
Trp
CCA
[ENA]
¡û
>W1910896488
NFZN01000093
Bacillota
Heyndrickxia coagulans HS243 [NFZN]
5695
5622
-
Trp
CCA
[ENA]
¡û
>W1910926868
NIJF01000107
Bacillota
Bacillus sp. P14.5 [NIJF]
111329
111256
-
Trp
CCA
[ENA]
¡û
>W1911177985
NQLS01000106
Bacillota
Peribacillus simplex 7894 [NQLS]
286
213
-
Trp
CCA
[ENA]
¡û
>W1911298427
NTTZ01000008
Bacillota
Bacillus sp. AFS017274 [NTTZ]
922
995
+
Trp
CCA
[ENA]
¡û
>W1911311208
NUBA01000055
Bacillota
Bacillus sp. AFS026049 [NUBA]
41659
41586
-
Trp
CCA
[ENA]
¡û
>W1911312220
NUBP01000019
Bacillota
Bacillus pseudomycoides AFS022719 [NUBP]
112459
112387
-
Trp
CCA
[ENA]
¡û
>W1911314806
NUDA01000012
Bacillota
Bacillus pseudomycoides AFS013396 [NUDA]
111925
111853
-
Trp
CCA
[ENA]
¡û
>W1911316345
NUDW01000033
Bacillota
Bacillus pseudomycoides AFS009013 [NUDW]
373
445
+
Trp
CCA
[ENA]
¡û
>W1911316484
NUDY01000042
Bacillota
Bacillus pseudomycoides AFS008599 [NUDY]
191
263
+
Trp
CCA
[ENA]
¡û
>W1911317728
NUEQ01000026
Bacillota
Peribacillus butanolivorans AFS003229 [NUEQ]
908
981
+
Trp
CCA
[ENA]
¡û
>W1911342153
NUSD01000046
Bacillota
Bacillus pseudomycoides AFS047869 [NUSD]
88260
88188
-
Trp
CCA
[ENA]
¡û
>W1911343150
NUSS01000019
Bacillota
Bacillus sp. AFS043905 [NUSS]
914
987
+
Trp
CCA
[ENA]
¡û
>W1911343786
NUTB01000044
Bacillota
Bacillus pseudomycoides AFS040883 [NUTB]
335
407
+
Trp
CCA
[ENA]
¡û
>W1911344216
NUTH01000033
Bacillota
Bacillus pseudomycoides AFS039118 [NUTH]
192
264
+
Trp
CCA
[ENA]
¡û
>W1911344488
NUTL01000048
Bacillota
Bacillus pseudomycoides AFS037265 [NUTL]
193
265
+
Trp
CCA
[ENA]
¡û
>W1911346186
NUUJ01000357
Bacillota
Bacillus pseudomycoides AFS032210 [NUUJ]
192
264
+
Trp
CCA
[ENA]
¡û
>W1911365653
NVEY01000005
Bacillota
Bacillus pseudomycoides AFS087909 [NVEY]
91383
91311
-
Trp
CCA
[ENA]
¡û
>W1911365813
NVFA01000071
Bacillota
Bacillus pseudomycoides AFS086794 [NVFA]
86720
86648
-
Trp
CCA
[ENA]
¡û
>W1911369539
NVHD01000075
Bacillota
Bacillus pseudomycoides AFS074519 [NVHD]
88598
88526
-
Trp
CCA
[ENA]
¡û
>W1911370918
NVHX01000018
Bacillota
Bacillus pseudomycoides AFS070925 [NVHX]
86945
86873
-
Trp
CCA
[ENA]
¡û
>W1911373247
NVJG01000008
Bacillota
Bacillus pseudomycoides AFS064122 [NVJG]
669
741
+
Trp
CCA
[ENA]
¡û
>W1911373682
NVJM01000033
Bacillota
Bacillus pseudomycoides AFS062349 [NVJM]
479
552
+
Trp
CCA
[ENA]
¡û
>W1911373693
NVJM01000039
Bacillota
Bacillus pseudomycoides AFS062349 [NVJM]
372
444
+
Trp
CCA
[ENA]
¡û
>W1911381444
NVNR01000007
Bacillota
Bacillus sp. AFS094228 [NVNR]
915
988
+
Trp
CCA
[ENA]
¡û
>W1911382254
NVOC01000065
Bacillota
Bacillus pseudomycoides AFS095604 [NVOC]
191
263
+
Trp
CCA
[ENA]
¡û
>W1911384509
NVPK01000001
Bacillota
Bacillus pseudomycoides AFS099456 [NVPK]
669
741
+
Trp
CCA
[ENA]
¡û
>W1911384525
NVPK01000015
Bacillota
Bacillus pseudomycoides AFS099456 [NVPK]
463
536
+
Trp
CCA
[ENA]
¡û
>W1911384878
NVPP01000009
Bacillota
Bacillus pseudomycoides AFS098564 [NVPP]
33992
33920
-
Trp
CCA
[ENA]
¡û
>W1911405110
NWQJ01000011
Bacillota
Peribacillus simplex WY10 [NWQJ]
205327
205254
-
Trp
CCA
[ENA]
¡û
>W1911424226
NXGA01000001
Bacillota
Sporolactobacillus pectinivorans GD201205 [NXGA]
3369383
3369312
-
Trp
CCA
[ENA]
¡û
>W1810057860
PDIZ01000003
Bacillota
Bacillus sp. es.036 [PDIZ]
385953
386026
+
Trp
CCA
[ENA]
¡û
>W1810103938
PGVB01000009
Bacillota
Bacillus sp. T33-2 [PGVB]
492
565
+
Trp
CCA
[ENA]
¡û
>W1810115882
PHNG01000754
Bacillota
Bacillus sp. mrc49 [PHNG]
12218
12145
-
Trp
CCA
[ENA]
¡û
>W1810154748
PIZR01000002
Bacillota
Bacillus sp. BA3 [PIZR]
1438926
1438853
-
Trp
CCA
[ENA]
¡û
>W1810192122
PKLB01000005
Bacillota
Bacillus sp. UMB0893 [PKLB]
358224
358151
-
Trp
CCA
[ENA]
¡û
>W1810361188
PVQJ01000030
Bacillota
Bacillus sp. RJGP41 [PVQJ]
44605
44532
-
Trp
CCA
[ENA]
¡û
>W1810658953
QJJR01000023
Bacillota
Streptohalobacillus salinus DSM 22440 [QJJR]
1137
1208
+
Trp
CCA
[ENA]
¡û
>W1810756358
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1499579
1499506
-
Trp
CCA
[ENA]
¡û
>W1810759358
QPJJ01000003
Bacillota
Saliterribacillus persicus DSM 27696 [QPJJ]
348158
348086
-
Trp
CCA
[ENA]
¡û
>W1810806895
QRUW01000059
Bacillota
Heyndrickxia coagulans AF24-19 [QRUW]
1138
1211
+
Trp
CCA
[ENA]
¡û
>C151030287
CP007626
Bacillota
Bacillus pseudomycoides 219298 [CP007626]
3193407
3193479
+
Trp
CCA
[Ensembl]
¡û
>C151070443
CP010525
Bacillota
Heyndrickxia coagulans HM-08 [CP010525]
905207
905280
+
Trp
CCA
[Ensembl]
¡û
>W1510061075
CCXW01000001
Bacillota
Peribacillus simplex P558 [CCXW]
997304
997377
+
Trp
CCA
[ENA]
¡û
>C11102795
CP003056
Bacillota
Heyndrickxia coagulans 36D1 [CP003056]
2340045
2340118
+
Trp
CCA
[Ensembl]
¡û
>W1511312721
JPSK01000102
Bacillota
Heyndrickxia coagulans GBI-30, 6086 [JPSK]
850
923
+
Trp
CCA
[ENA]
¡û
>W1511595252
LBMQ01000054
Bacillota
Heyndrickxia coagulans NL01 [LBMQ]
14667
14594
-
Trp
CCA
[ENA]
¡û
>C161031044
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
858073
858146
+
Trp
CCA
[Ensembl]
¡û
>W121104831
ALAS01000264
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ALAS]
1194
1267
+
Trp
CCA
[ENA]
¡û
>W121124198
BAEY01000037
Bacillota
Sporolactobacillus vineae DSM 21990 = SL153 [BAEY]
891
962
+
Trp
CCA
[ENA]
¡û
>W1610029480
AXBR01000002
Bacillota
Peribacillus simplex BA2H3 [AXBR]
32451
32378
-
Trp
CCA
[ENA]
¡û
>W1610073016
BCVO01000025
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
11
84
+
Trp
CCA
[ENA]
¡û
>W1610586275
LDGI01000003
Bacillota
Peribacillus muralis G25-68 [LDGI]
18313
18240
-
Trp
CCA
[ENA]
¡û
>W1610718008
LLYY01000002
Bacillota
Shouchella shacheensis [LLYY]
393648
393575
-
Trp
CCA
[ENA]
¡û
>W1610721365
LMBV01000018
Bacillota
Peribacillus muralis [LMBV]
81077
81004
-
Trp
CCA
[ENA]
¡û
>W1610741336
LMRJ01000038
Bacillota
Bacillus sp. Leaf13 [LMRJ]
27101
27028
-
Trp
CCA
[ENA]
¡û
>W1610743609
LMSZ01000001
Bacillota
Bacillus sp. Soil745 [LMSZ]
6096
6169
+
Trp
CCA
[ENA]
¡û
>W1610743708
LMTA01000023
Bacillota
Bacillus sp. Soil768D1 [LMTA]
52652
52579
-
Trp
CCA
[ENA]
¡û
>W1610764537
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
29580
29507
-
Trp
CCA
[ENA]
¡û
>W1610868141
LQYG01000112
Bacillota
Heyndrickxia coagulans [LQYG]
3529
3456
-
Trp
CCA
[ENA]
¡û
>W1610889417
LRPN01000121
Bacillota
Heyndrickxia coagulans [LRPN]
8106
8033
-
Trp
CCA
[ENA]
¡û
>W1610941598
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1807591
1807518
-
Trp
CCA
[ENA]
¡û
>W1610989305
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
4006804
4006731
-
Trp
CCA
[ENA]
¡û
>W1610989460
LWJJ01000093
Bacillota
Peribacillus simplex [LWJJ]
4616
4689
+
Trp
CCA
[ENA]
¡û
>W1710026850
AXBR01000002
Bacillota
Peribacillus simplex BA2H3 [AXBR]
32451
32378
-
Trp
CCA
[ENA]
¡û
>W1710070134
BCVO01000025
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
11
84
+
Trp
CCA
[ENA]
¡û
>W1710568515
FOTR01000002
Bacillota
Gracilibacillus orientalis [FOTR]
563851
563779
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK