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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412232 (4 seq.)
>WENV180339099
OBLI01002211
[OBLI] pig gut metagenome; faeces
10234
10159
-
Gln
CTG
[ENA]
¡û
>WENV180339128
OBLI01002393
[OBLI] pig gut metagenome; faeces
10245
10320
+
Gln
CTG
[ENA]
¡û
>W2012156274
VUNR01000008
Bacillota
Selenomonadaceae bacterium DSM 108025 WCA-693-APC-5D-A [VUNR]
30420
30495
+
Gln
CTG
[ENA]
¡û
>W2012156286
VUNR01000023
Bacillota
Selenomonadaceae bacterium DSM 108025 WCA-693-APC-5D-A [VUNR]
24124
24049
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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