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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412232 (65 seq.)
>W1710853008
LLWF02000056
Alphaproteobacteria
Roseomonas mucosa [LLWF]
2500
2426
-
Gln
TTG
[ENA]
¡û
>W131231741
AUIR01000011
Alphaproteobacteria
Thalassobaculum salexigens DSM 19539 [AUIR]
244983
245057
+
Gln
TTG
[ENA]
¡û
>W1711511632
MLCO01000443
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
569
640
+
Gln
TTG
[ENA]
¡û
>W131109456
APHV01000170
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
45843
45769
-
Gln
TTG
[ENA]
¡û
>W131163785
ARAA01000046
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
80878
80952
+
Gln
TTG
[ENA]
¡û
>W131223623
AUCF01000004
Alphaproteobacteria
Azospirillum halopraeferens DSM 3675 [AUCF]
391677
391603
-
Gln
TTG
[ENA]
¡û
>C171039531
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
748181
748255
+
Gln
TTG
-
¡û
>C013323
CP000390
Cyanobacteriota
Chelativorans sp. BNC1 [CP000390]
857350
857424
+
Gln
TTG
[Ensembl]
¡û
>w026453
ABAY01000001
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
111868
111942
+
Gln
TTG
[ENA]
¡û
>WENV181312264
OFJB01066664
[OFJB] sludge metagenome; sludge
91
165
+
Gln
TTG
[ENA]
¢þ
>W141276629
JADY01000003
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
3473
3399
-
Gln
TTG
[ENA]
¡û
>W141277519
JAEQ01000022
Alphaproteobacteria
Chelativorans sp. J32 [JAEQ]
40241
40315
+
Gln
TTG
[ENA]
¡û
>WENV170018697
BBPD01000414
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
12623
12549
-
Gln
TTG
[ENA]
¢þ
>WENV170018803
BBPD01001087
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3975
3901
-
Gln
TTG
[ENA]
¢þ
>WENV170019490
BBPD01014013
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1
75
+
Gln
TTG
[ENA]
¢þ
>WENV170020031
BBPE01002211
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5691
5617
-
Gln
TTG
[ENA]
¢þ
>WENV170020147
BBPE01003399
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
392
318
-
Gln
TTG
[ENA]
¢þ
>WENV170709715
LNFM01000621
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16359
16433
+
Gln
TTG
[ENA]
¢þ
>WENV170711267
LNFM01004276
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3364
3290
-
Gln
TTG
[ENA]
¢þ
>WENV170712560
LNFM01014891
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2109
2183
+
Gln
TTG
[ENA]
¢þ
>WENV170964887
MRWG01064408
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
60
134
+
Gln
TTG
[ENA]
¢þ
>WENV170964890
MRWG01065134
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
78
152
+
Gln
TTG
[ENA]
¢þ
>PL191001035
CP032346
Alphaproteobacteria
Azospirillum brasilense MTCC4039 plasmid:p1 (CP032346)
888402
888476
+
Gln
TTG
[ENA]
¡û
>C181102031
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
3848395
3848469
+
Gln
TTG
-
¡û
>W141520286
JGVN01000002
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1084077
1084003
-
Gln
TTG
[ENA]
¡û
>W141558692
JHWD01000001
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
422877
422951
+
Gln
TTG
[ENA]
¡û
>W09101264
AAED02000014
Alphaproteobacteria
Chelativorans sp. BNC1 BNC1 [AAED]
2854
2928
+
Gln
TTG
[ENA]
¡û
>W141810190
JPUG01000053
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
96777
96851
+
Gln
TTG
[ENA]
¡û
>W141816700
JQKB01000037
Alphaproteobacteria
Belnapia moabensis DSM 16746 [JQKB]
46219
46293
+
Gln
TTG
[ENA]
¡û
>C09107873
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
2405524
2405450
-
Gln
TTG
[Ensembl]
¡û
>W1910548578
FZOP01000007
Alphaproteobacteria
Azospirillum sp. RU37A [FZOP]
52137
52063
-
Gln
TTG
[ENA]
¡û
>W1911768593
QXGS01000006
Alphaproteobacteria
Pseudoroseomonas vastitatis CPCC 101021 [QXGS]
112266
112340
+
Gln
TTG
[ENA]
¡û
>W1810062065
PDNU01000065
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
20661
20735
+
Gln
TTG
[ENA]
¡û
>W1810062333
PDOA01000016
Alphaproteobacteria
Pseudoroseomonas aestuarii JR1/69-1-13 [PDOA]
73515
73441
-
Gln
TTG
[ENA]
¡û
>W1810079888
PELK01001349
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
813
739
-
Gln
TTG
[ENA]
¡û
>W1810223513
POTD01000001
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
23808
23734
-
Gln
TTG
[ENA]
¡û
>W1810605687
QGNJ01000004
Alphaproteobacteria
Oleisolibacter albus NAU-10 [QGNJ]
318882
318956
+
Gln
TTG
[ENA]
¡û
>W1810692333
QLIX01000008
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
152214
152288
+
Gln
TTG
[ENA]
¡û
>W1810692608
QLKQ01000118
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
9272
9198
-
Gln
TTG
[ENA]
¡û
>W1810706675
QMKH01000003
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
275312
275238
-
Gln
TTG
[ENA]
¡û
>C151104291
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
3461518
3461444
-
Gln
TTG
[Ensembl]
¡û
>C151104330
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
2312311
2312385
+
Gln
TTG
[Ensembl]
¡û
>ENV09003399
ADGO01031578
Compost metagenome contig00001
219
293
+
Gln
TTG
[ENA]
¡û
>W10119142
ADVL01000085
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
399
473
+
Gln
TTG
[ENA]
¡û
>W1511352881
JROR01000007
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
619674
619600
-
Gln
TTG
[ENA]
¡û
>W1511400943
JTHG01000084
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
24643
24717
+
Gln
TTG
[ENA]
¡û
>W11125362
ADVL01000085
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
399
473
+
Gln
TTG
[ENA]
¡û
>W1511624262
LCYG01000022
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
13256
13182
-
Gln
TTG
[ENA]
¡û
>C121016607
FQ311868
Alphaproteobacteria
Azospirillum lipoferum 4B [FQ311868]
1293573
1293499
-
Gln
TTG
[Ensembl]
¡û
>C161001191
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
2744530
2744456
-
Gln
TTG
[Ensembl]
¡û
>W121009578
AGEZ01000075
Alphaproteobacteria
Acetobacteraceae bacterium AT-5844 [AGEZ]
5841
5915
+
Gln
TTG
[ENA]
¡û
>W121113821
ALOX01000008
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
85960
86034
+
Gln
TTG
[ENA]
¡û
>W1610590447
LDRL01000125
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
5244
5318
+
Gln
TTG
[ENA]
¡û
>W1610716121
LLWF01000018
Alphaproteobacteria
Roseomonas mucosa [LLWF]
1932
1858
-
Gln
TTG
[ENA]
¡û
>W1610731982
LMJW01000020
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
112400
112474
+
Gln
TTG
[ENA]
¡û
>W1710084280
BDLP01000091
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
12734
12660
-
Gln
TTG
[ENA]
¡û
>W1710510476
FMXZ01000002
Alphaproteobacteria
Belnapia rosea [FMXZ]
38959
38885
-
Gln
TTG
[ENA]
¡û
>W1710513106
FMZX01000010
Alphaproteobacteria
Belnapia rosea [FMZX]
170867
170941
+
Gln
TTG
[ENA]
¡û
>W1710515551
FNBW01000010
Alphaproteobacteria
Thalassobaculum litoreum DSM 18839 [FNBW]
220348
220422
+
Gln
TTG
[ENA]
¡û
>W1710524924
FNJC01000003
Alphaproteobacteria
Filomicrobium insigne [FNJC]
29859
29933
+
Gln
TTG
[ENA]
¡û
>W1710557015
FOKP01000072
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
257
183
-
Gln
TTG
[ENA]
¡û
>W1710579042
FPCB01000007
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
48548
48474
-
Gln
TTG
[ENA]
¡û
>W1710588285
FQZF01000011
Alphaproteobacteria
Roseomonas rosea [FQZF]
40342
40268
-
Gln
TTG
[ENA]
¡û
>W1710626750
JPIS01000021
Alphaproteobacteria
Azospirillum brasilense [JPIS]
23015
22941
-
Gln
TTG
[ENA]
¡û
>W1710709727
LDRL01000125
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
5244
5318
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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