This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412252 (40 seq.)
>W1711294769
MABH01000138
Alphaproteobacteria
Cereibacter johrii [MABH]
24782
24708
-
Lys
TTT
[ENA]
¡û
>WENV010827
AACY020293539
Marine microbial communities from Global Ocean Sampling (GOS)
1070
996
-
Lys
TTT
[ENA]
>C171036998
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
2687393
2687467
+
Lys
TTT
-
¡û
>W131058655
ANFS01000030
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
40384
40458
+
Lys
TTT
[ENA]
¡û
>C019223
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
2687477
2687551
+
Lys
TTT
[Ensembl]
¡û
>C019286
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
3044610
3044536
-
Lys
TTT
[Ensembl]
¡û
>C019314
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
2734589
2734663
+
Lys
TTT
[Ensembl]
¡û
>WENV180231735
OBCO01000001
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
1008441
1008515
+
Lys
TTT
[ENA]
¢þ
>WENV180232709
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1250584
1250658
+
Lys
TTT
[ENA]
¢þ
>w001271
AAAE01000153
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
95254
95183
-
Lys
TTT
[ENA]
¡û
>WENV180569851
OCLR01000589
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
15588
15662
+
Lys
TTT
[ENA]
¢þ
>WENV180570797
OCLS01000593
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
15562
15636
+
Lys
TTT
[ENA]
¢þ
>WENV180571092
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
1008318
1008392
+
Lys
TTT
[ENA]
¢þ
>WENV180573437
OCLW01000016
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
509626
509700
+
Lys
TTT
[ENA]
¢þ
>WENV180639418
OCRL01000002
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
1008316
1008390
+
Lys
TTT
[ENA]
¢þ
>WENV180640321
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
1250580
1250654
+
Lys
TTT
[ENA]
¢þ
>WENV183617097
OOEE01055715
[OOEE] marine metagenome; sea ice
375
301
-
Lys
TTT
[ENA]
¢þ
>C181017229
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
2687362
2687436
+
Lys
TTT
-
¡û
>C181084436
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
168131
168057
-
Lys
TTT
-
¡û
>C181191114
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
2687378
2687452
+
Lys
TTT
-
¡û
>C191079660
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
2590037
2590111
+
Lys
TTT
-
¡û
>C191151015
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
2761269
2761343
+
Lys
TTT
-
¡û
>W09104732
AAME01000016
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
50209
50135
-
Lys
TTT
[ENA]
¡û
>W09104761
AAMF01000001
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
1124621
1124547
-
Lys
TTT
[ENA]
¡û
>W1910548859
FZOV01000002
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
360972
361046
+
Lys
TTT
[ENA]
¡û
>C09109054
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
2340683
2340757
+
Lys
TTT
[Ensembl]
¡û
>W1911491912
OAOQ01000002
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
332118
332044
-
Lys
TTT
[ENA]
¡û
>W1911749466
QWGP01000031
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
8920
8846
-
Lys
TTT
[ENA]
¡û
>W1911766297
QXDK01000031
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
21695
21769
+
Lys
TTT
[ENA]
¡û
>W1810116274
PHOB01000049
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
17362
17436
+
Lys
TTT
[ENA]
¡û
>W1810119957
PHSI01000061
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
62999
63073
+
Lys
TTT
[ENA]
¡û
>W1810463832
PZZW01000003
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
512868
512942
+
Lys
TTT
[ENA]
¡û
>W1810477378
QAOT01000012
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
74823
74749
-
Lys
TTT
[ENA]
¡û
>W1810699102
QMCC01000004
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
501674
501600
-
Lys
TTT
[ENA]
¡û
>W1810785206
QRBG01000031
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
501874
501800
-
Lys
TTT
[ENA]
¡û
>W11160172
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
2107057
2107131
+
Lys
TTT
[ENA]
¡û
>C161048358
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
2686894
2686968
+
Lys
TTT
-
¡û
>W121076772
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
520636
520710
+
Lys
TTT
[ENA]
¡û
>W121102129
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
2687384
2687458
+
Lys
TTT
[ENA]
¡û
>W1710528155
FNMZ01000001
Alphaproteobacteria
Albimonas donghaensis [FNMZ]
345051
344977
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK