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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412259 (87 seq.)
>W1710912941
LNSA01000026
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
11245
11172
-
Gln
CTG
[ENA]
¡û
>W1710912968
LNSB01000019
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
78421
78494
+
Gln
CTG
[ENA]
¡û
>W1710913033
LNSC01000065
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14871
14944
+
Gln
CTG
[ENA]
¡û
>W1710913074
LNSD01000011
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1710913085
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
5307
5380
+
Gln
CTG
[ENA]
¡û
>W1710913166
LNSF01000012
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1710913211
LNSG01000010
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1710913264
LNSH01000044
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
417
344
-
Gln
CTG
[ENA]
¡û
>W1710913309
LNSI01000040
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
417
344
-
Gln
CTG
[ENA]
¡û
>W1710913354
LNSJ01000047
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
417
344
-
Gln
CTG
[ENA]
¡û
>W1710913394
LNSK01000009
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
9789
9716
-
Gln
CTG
[ENA]
¡û
>W131100411
AOUN01000003
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
9774
9701
-
Gln
CTG
[ENA]
¡û
>W1711127861
LURA01000089
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
9803
9730
-
Gln
CTG
[ENA]
¡û
>W1711127896
LURB01000065
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
11744
11817
+
Gln
CTG
[ENA]
¡û
>W1711127928
LURE01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
164553
164480
-
Gln
CTG
[ENA]
¡û
>W1711127972
LURF01000072
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
45
118
+
Gln
CTG
[ENA]
¡û
>W1711128008
LURG01000328
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
5618
5691
+
Gln
CTG
[ENA]
¡û
>W1711128021
LURH01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
143529
143456
-
Gln
CTG
[ENA]
¡û
>W1711128081
LURI01000008
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
9462
9389
-
Gln
CTG
[ENA]
¡û
>W1711503943
MKUC01000005
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
9916
9843
-
Gln
CTG
[ENA]
¡û
>C171047063
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
2487424
2487351
-
Gln
CTG
-
¡û
>C171094544
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
164433
164506
+
Gln
CTG
-
¡û
>C171128421
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
4119090
4119163
+
Gln
CTG
-
¡û
>WENV180039440
LLBY010070671
[LLBY] soil metagenome; soil from tomato rhizosphere
9439
9366
-
Gln
CTG
[ENA]
¢þ
>WENV181167356
OEIU01021665
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1109
1182
+
Gln
CTG
[ENA]
¢þ
>WENV181168779
OEIU01775883
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
91
164
+
Gln
CTG
[ENA]
¢þ
>WENV181191265
OEPS010047355
[OEPS] soil metagenome; soil
596
669
+
Gln
CTG
[ENA]
¢þ
>WENV181308375
OFIS01008473
[OFIS] sludge metagenome; sludge
1301
1374
+
Gln
CTG
[ENA]
¢þ
>WENV181402195
OFTY01000215
[OFTY] sludge metagenome; sludge
12108
12181
+
Gln
CTG
[ENA]
¢þ
>WENV170727394
LULE01000022
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
113707
113634
-
Gln
CTG
[ENA]
¢þ
>WENV170728945
LULF01003262
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
978
905
-
Gln
CTG
[ENA]
¢þ
>WENV170729760
LULG01000934
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
5618
5691
+
Gln
CTG
[ENA]
¢þ
>WENV170732322
LULI01034307
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
394
321
-
Gln
CTG
[ENA]
¢þ
>WENV170732923
LULJ01002185
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
658
731
+
Gln
CTG
[ENA]
¢þ
>WENV170734164
LULK01001890
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
45
118
+
Gln
CTG
[ENA]
¢þ
>WENV170735658
LULL01007227
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
396
469
+
Gln
CTG
[ENA]
¢þ
>WENV170736429
LULM01003019
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
1413
1340
-
Gln
CTG
[ENA]
¢þ
>WENV170737610
LULO01000946
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
12494
12567
+
Gln
CTG
[ENA]
¢þ
>WENV170738404
LULP01000122
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
8864
8937
+
Gln
CTG
[ENA]
¢þ
>WENV170739630
LULQ01005732
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1311
1384
+
Gln
CTG
[ENA]
¢þ
>WENV170740457
LULR01010777
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
74
1
-
Gln
CTG
[ENA]
¢þ
>WENV170742400
LULU01017196
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
828
755
-
Gln
CTG
[ENA]
¢þ
>WENV170742785
LULV01000700
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
11744
11817
+
Gln
CTG
[ENA]
¢þ
>WENV170743455
LULW01000104
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
9803
9730
-
Gln
CTG
[ENA]
¢þ
>WENV170745738
LULY01035004
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
544
471
-
Gln
CTG
[ENA]
¢þ
>WENV170759300
LUMS01010585
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
661
588
-
Gln
CTG
[ENA]
¢þ
>WENV170759685
LUMT01000165
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
9462
9389
-
Gln
CTG
[ENA]
¢þ
>WENV170761475
LUMV01000539
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
8747
8820
+
Gln
CTG
[ENA]
¢þ
>WENV170762592
LUMW01017226
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
657
584
-
Gln
CTG
[ENA]
¢þ
>WENV170991067
MWWA01105012
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
106
179
+
Gln
CTG
[ENA]
¢þ
>C191163802
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
4215831
4215904
+
Gln
CTG
-
¡û
>W1910501775
FYAT01000014
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
251514
251587
+
Gln
CTG
[ENA]
¡û
>W1910744401
MIAM01000057
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
23328
23401
+
Gln
CTG
[ENA]
¡û
>W1911411566
NWUR01000008
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
9627
9554
-
Gln
CTG
[ENA]
¡û
>W1810239615
PPSM01000025
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
147889
147962
+
Gln
CTG
[ENA]
¡û
>W1510015805
BBRO01000002
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
783111
783038
-
Gln
CTG
[ENA]
¡û
>W1511221166
JNFC01000031
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
15802
15729
-
Gln
CTG
[ENA]
¡û
>W11167353
AFMP01000040
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
307590
307517
-
Gln
CTG
[ENA]
¡û
>C161021398
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
5027343
5027270
-
Gln
CTG
[Ensembl]
¡û
>C161043664
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
4544046
4543973
-
Gln
CTG
[Ensembl]
¡û
>C161055602
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2190161
2190234
+
Gln
CTG
[Ensembl]
¡û
>C161055662
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
5233303
5233230
-
Gln
CTG
-
¡û
>W1610077688
BCZQ01000019
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
111349
111276
-
Gln
CTG
[ENA]
¡û
>W1610550587
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2406667
2406594
-
Gln
CTG
[ENA]
¡û
>W1610771300
LNSA01000026
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
11245
11172
-
Gln
CTG
[ENA]
¡û
>W1610771327
LNSB01000019
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
78421
78494
+
Gln
CTG
[ENA]
¡û
>W1610771392
LNSC01000065
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14871
14944
+
Gln
CTG
[ENA]
¡û
>W1610771433
LNSD01000011
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1610771444
LNSE01000001
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
5307
5380
+
Gln
CTG
[ENA]
¡û
>W1610771525
LNSF01000012
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1610771570
LNSG01000010
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
4778
4851
+
Gln
CTG
[ENA]
¡û
>W1610771623
LNSH01000044
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
417
344
-
Gln
CTG
[ENA]
¡û
>W1610771668
LNSI01000040
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
417
344
-
Gln
CTG
[ENA]
¡û
>W1610771713
LNSJ01000047
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
417
344
-
Gln
CTG
[ENA]
¡û
>W1610771753
LNSK01000009
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
9789
9716
-
Gln
CTG
[ENA]
¡û
>W1610938975
LURA01000089
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
9803
9730
-
Gln
CTG
[ENA]
¡û
>W1610939010
LURB01000065
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
11744
11817
+
Gln
CTG
[ENA]
¡û
>W1610939042
LURE01000002
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
164553
164480
-
Gln
CTG
[ENA]
¡û
>W1610939086
LURF01000072
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
45
118
+
Gln
CTG
[ENA]
¡û
>W1610939122
LURG01000328
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
5618
5691
+
Gln
CTG
[ENA]
¡û
>W1610939135
LURH01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
143529
143456
-
Gln
CTG
[ENA]
¡û
>W1610939195
LURI01000008
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
9462
9389
-
Gln
CTG
[ENA]
¡û
>W1710075326
BCZQ01000019
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
111349
111276
-
Gln
CTG
[ENA]
¡û
>W1710540033
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
1258164
1258091
-
Gln
CTG
[ENA]
¡û
>W1710562053
FOOR01000001
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
615953
616026
+
Gln
CTG
[ENA]
¡û
>W1710609423
FXWL01000001
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
1187694
1187621
-
Gln
CTG
[ENA]
¡û
>W1710660350
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2406667
2406594
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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