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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412280 (33 seq.)
>W1710856321
LLZH01000348
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
14999
14927
-
Gly
GCC
[ENA]
¡û
>W1710856323
LLZH01000348
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
203
131
-
Gly
GCC
[ENA]
¡û
>C171033871
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
4429777
4429851
+
Gly
GCC
-
¡û
>C171033897
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
79573
79501
-
Gly
GCC
-
¡û
>C171045477
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
5223889
5223963
+
Gly
GCC
-
¡û
>C171045504
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
86258
86186
-
Gly
GCC
-
¡û
>C171045524
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
5283060
5283134
+
Gly
GCC
-
¡û
>C171045551
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
86205
86133
-
Gly
GCC
-
¡û
>C171131292
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
6400527
6400599
+
Gly
GCC
-
¡û
>WENV183749550
PPFU01183700
[PPFU] hypolithon metagenome; Antarctic Hypolithon
74
2
-
Gly
GCC
[ENA]
¢þ
>WENV183749670
PPFU01197989
[PPFU] hypolithon metagenome; Antarctic Hypolithon
743
815
+
Gly
GCC
[ENA]
¢þ
>WENV170023707
BCQL01001450
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
4158
4086
-
Gly
GCC
[ENA]
¢þ
>WENV170627497
FUWD013232959
[FUWD] metagenome; unknown
28180
28106
-
Gly
GCC
[ENA]
¢þ
>C181067258
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
4669742
4669814
+
Gly
GCC
-
¡û
>C181067284
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
84144
84072
-
Gly
GCC
-
¡û
>C181078576
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
6399656
6399728
+
Gly
GCC
-
¡û
>C191120874
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
1284072
1284000
-
Gly
GCC
-
¡û
>W1910182913
BJNG01000066
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
4542
4470
-
Gly
GCC
[ENA]
¡û
>W1810400554
PYGE01000024
Actinomycetota
Haloactinopolyspora alba DSM 45211 [PYGE]
44625
44697
+
Gly
GCC
[ENA]
¡û
>W1810694907
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
13115
13187
+
Gly
GCC
[ENA]
¡û
>W1810694910
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
22790
22862
+
Gly
GCC
[ENA]
¡û
>W1810704997
QMIG01000003
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
63650
63722
+
Gly
GCC
[ENA]
¡û
>W1810759001
QPJC01000005
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
77566
77494
-
Gly
GCC
[ENA]
¡û
>SRA1024184
SRR035084.268151
454 Sequencing (SRP001805)
273
199
-
Gly
GCC
[SRA]
>SRA1046818
SRR035093.392789
454 Sequencing (SRP001814)
259
185
-
Gly
GCC
[SRA]
>W1511545112
JZKF01000021
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
96
24
-
Gly
GCC
[ENA]
¡û
>W1511545148
JZKF01000279
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
96
24
-
Gly
GCC
[ENA]
¡û
>W1511545149
JZKF01000290
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
4
76
+
Gly
GCC
[ENA]
¡û
>C121007242
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
6400506
6400578
+
Gly
GCC
[Ensembl]
¡û
>W1610052485
BBHX01002505
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
461
389
-
Gly
GCC
[ENA]
¡û
>W1610718702
LLZH01000348
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
14999
14927
-
Gly
GCC
[ENA]
¡û
>W1610718704
LLZH01000348
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
203
131
-
Gly
GCC
[ENA]
¡û
>W1710048863
BBHX01002505
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
461
389
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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