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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412288 (92 seq.)
>W1711094797
LTGG01000089
Betaproteobacteria
Eikenella sp. HMSC071B05 [LTGG]
27970
28043
+
Cys
GCA
[ENA]
¡û
>W1711099445
LTKM01000073
Betaproteobacteria
Eikenella sp. HMSC061C02 [LTKM]
977
904
-
Cys
GCA
[ENA]
¡û
>W1711107423
LTST01000095
Betaproteobacteria
Eikenella sp. HMSC073A11 [LTST]
27768
27841
+
Cys
GCA
[ENA]
¡û
>W1711222609
LXSE01000033
Betaproteobacteria
Eikenella corrodens [LXSE]
187186
187259
+
Cys
GCA
[ENA]
¡û
>W1711222641
LXSF01000005
Betaproteobacteria
Eikenella corrodens [LXSF]
946
873
-
Cys
GCA
[ENA]
¡û
>W1711222675
LXSG01000014
Betaproteobacteria
Eikenella corrodens [LXSG]
57472
57399
-
Cys
GCA
[ENA]
¡û
>W1711222735
LXSH01000022
Betaproteobacteria
Eikenella corrodens [LXSH]
195967
195894
-
Cys
GCA
[ENA]
¡û
>W1711222775
LXSI01000005
Betaproteobacteria
Eikenella corrodens [LXSI]
946
873
-
Cys
GCA
[ENA]
¡û
>W1711222807
LXSJ01000013
Betaproteobacteria
Eikenella corrodens [LXSJ]
38241
38168
-
Cys
GCA
[ENA]
¡û
>W1711222847
LXSK01000001
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
215377
215450
+
Cys
GCA
[ENA]
¡û
>W1711222924
LXSL01000028
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
33296
33223
-
Cys
GCA
[ENA]
¡û
>W1711222963
LXSM01000016
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
208990
209063
+
Cys
GCA
[ENA]
¡û
>W1711222997
LXSN01000004
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
830508
830435
-
Cys
GCA
[ENA]
¡û
>W1711223024
LXSO01000002
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
120271
120344
+
Cys
GCA
[ENA]
¡û
>W1711223062
LXSP01000001
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
120116
120189
+
Cys
GCA
[ENA]
¡û
>W1711223115
LXSQ01000014
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
133099
133172
+
Cys
GCA
[ENA]
¡û
>W1711223182
LXSR01000015
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
830482
830409
-
Cys
GCA
[ENA]
¡û
>W1711223228
LXSS01000013
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
517497
517424
-
Cys
GCA
[ENA]
¡û
>W1711223236
LXST01000001
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
120181
120254
+
Cys
GCA
[ENA]
¡û
>W131233943
AUKK01000027
Betaproteobacteria
Glomeribacter sp. 1016415 [AUKK]
7665
7738
+
Cys
GCA
[ENA]
¡û
>W1711712075
MTBM01000013
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
44568
44495
-
Cys
GCA
[ENA]
¡û
>W1712084804
NHRS01000002
Betaproteobacteria
Eikenella corrodens [NHRS]
564698
564625
-
Cys
GCA
[ENA]
¡û
>WENV180041181
LLBZ010059166
[LLBZ] soil metagenome; soil from tomato rhizosphere
352
279
-
Cys
GCA
[ENA]
¢þ
>WENV180251536
OBEQ010373336
[OBEQ] groundwater metagenome; groundwater
2389
2316
-
Cys
GCA
[ENA]
¢þ
>WENV180751199
ODHS01028525
[ODHS] human metagenome; G_DNA_Supragingival plaque
51
124
+
Cys
GCA
[ENA]
¢þ
>WENV180801341
ODJD01022477
[ODJD] human metagenome; G_DNA_Supragingival plaque
197
270
+
Cys
GCA
[ENA]
¢þ
>WENV180805233
ODJG01108385
[ODJG] human metagenome; G_DNA_Supragingival plaque
266
193
-
Cys
GCA
[ENA]
¢þ
>WENV180807860
ODJI01013597
[ODJI] human metagenome; G_DNA_Tongue dorsum
848
775
-
Cys
GCA
[ENA]
¢þ
>WENV180810354
ODJK01241338
[ODJK] human metagenome; G_DNA_Subgingival plaque
207
134
-
Cys
GCA
[ENA]
¢þ
>WENV180833298
ODKC01026780
[ODKC] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV180836032
ODKE01031128
[ODKE] human metagenome; G_DNA_Supragingival plaque
976
903
-
Cys
GCA
[ENA]
¢þ
>WENV180859639
ODLD01002014
[ODLD] human metagenome; G_DNA_Supragingival plaque
2733
2660
-
Cys
GCA
[ENA]
¢þ
>WENV180861278
ODLE01002035
[ODLE] human metagenome; G_DNA_Tongue dorsum
10969
10896
-
Cys
GCA
[ENA]
¢þ
>WENV180923262
ODTJ01091884
[ODTJ] human metagenome; G_DNA_Supragingival plaque
239
166
-
Cys
GCA
[ENA]
¢þ
>WENV180924764
ODTK01015096
[ODTK] human metagenome; G_DNA_Supragingival plaque
1959
1886
-
Cys
GCA
[ENA]
¢þ
>WENV180939796
ODTX01091462
[ODTX] human metagenome; G_DNA_Supragingival plaque
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV180949841
ODUG01043891
[ODUG] human metagenome; G_DNA_Tongue dorsum
782
709
-
Cys
GCA
[ENA]
¢þ
>WENV180958914
ODUL01126273
[ODUL] human metagenome; G_DNA_Supragingival plaque
46
119
+
Cys
GCA
[ENA]
¢þ
>WENV180973763
ODUW01017686
[ODUW] human metagenome; G_DNA_Supragingival plaque
1646
1573
-
Cys
GCA
[ENA]
¢þ
>WENV180987746
ODVK01111657
[ODVK] human metagenome; G_DNA_Supragingival plaque
206
133
-
Cys
GCA
[ENA]
¢þ
>WENV181003397
ODVX01011302
[ODVX] human metagenome; G_DNA_Supragingival plaque
198
271
+
Cys
GCA
[ENA]
¢þ
>WENV181006681
ODWA01091021
[ODWA] human metagenome; G_DNA_Buccal mucosa
189
116
-
Cys
GCA
[ENA]
¢þ
>WENV181009285
ODWE01048300
[ODWE] human metagenome; G_DNA_Supragingival plaque
791
718
-
Cys
GCA
[ENA]
¢þ
>WENV181050934
ODYD01100420
[ODYD] human metagenome; G_DNA_Supragingival plaque
98
171
+
Cys
GCA
[ENA]
¢þ
>WENV181064605
ODYP01054942
[ODYP] human metagenome; G_DNA_Supragingival plaque
195
268
+
Cys
GCA
[ENA]
¢þ
>WENV181068204
ODZI01172474
[ODZI] human metagenome; G_DNA_Supragingival plaque
64
137
+
Cys
GCA
[ENA]
¢þ
>WENV181070828
OEAE01013103
[OEAE] human metagenome; G_DNA_Supragingival plaque
95
168
+
Cys
GCA
[ENA]
¢þ
>WENV181077532
OEAP01067034
[OEAP] human metagenome; G_DNA_Supragingival plaque
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV181081226
OEAS01151075
[OEAS] human metagenome; G_DNA_Supragingival plaque
382
309
-
Cys
GCA
[ENA]
¢þ
>WENV181083905
OEAV01032628
[OEAV] human metagenome; G_DNA_Supragingival plaque
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV181137454
OEGJ01004211
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4348
4275
-
Cys
GCA
[ENA]
¢þ
>WENV181151460
OEHW01055300
[OEHW] human metagenome; G_DNA_Tongue dorsum
99
172
+
Cys
GCA
[ENA]
¢þ
>WENV181153238
OEIA01035616
[OEIA] human metagenome; G_DNA_Supragingival plaque
862
789
-
Cys
GCA
[ENA]
¢þ
>WENV181156721
OEIE01075213
[OEIE] human metagenome; G_DNA_Supragingival plaque
122
195
+
Cys
GCA
[ENA]
¢þ
>WENV181159326
OEIH01174468
[OEIH] human metagenome; G_DNA_Supragingival plaque
149
76
-
Cys
GCA
[ENA]
¢þ
>W141202093
AZGQ01000001
Betaproteobacteria
Eikenella corrodens CC92I [AZGQ]
163342
163415
+
Cys
GCA
[ENA]
¡û
>C181224099
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
830479
830552
+
Cys
GCA
-
¡û
>C181226788
LT906482
Betaproteobacteria
Eikenella corrodens NCTC10596 [LT906482]
1802960
1803033
+
Cys
GCA
-
¡û
>C191001080
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
569699
569626
-
Cys
GCA
-
¡û
>C191128755
CP034670
Betaproteobacteria
Eikenella corrodens KCOM 3110 [CP034670]
1202725
1202652
-
Cys
GCA
-
¡û
>C191138914
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
1921822
1921895
+
Cys
GCA
-
¡û
>C191214495
LR134533
Betaproteobacteria
Neisseria weaveri NCTC12742 [LR134533]
735364
735291
-
Cys
GCA
-
¡û
>W09119686
ACEA01000003
Betaproteobacteria
Eikenella corrodens ATCC 23834 [ACEA]
61053
60980
-
Cys
GCA
[ENA]
¡û
>W1810227212
POXE01000005
Betaproteobacteria
Neisseria weaveri C2009028987 [POXE]
3334
3407
+
Cys
GCA
[ENA]
¡û
>W1810227244
POXF01000001
Betaproteobacteria
Neisseria weaveri C2009035459 [POXF]
401672
401599
-
Cys
GCA
[ENA]
¡û
>W1810227397
POXI01000001
Betaproteobacteria
Neisseria weaveri C2010015191 [POXI]
447601
447528
-
Cys
GCA
[ENA]
¡û
>W1810228018
POXU01000001
Betaproteobacteria
Neisseria weaveri C2013013825 [POXU]
128395
128468
+
Cys
GCA
[ENA]
¡û
>W1510013084
BBOF01000044
Betaproteobacteria
bacterium endosymbiont of Mortierella elongata FMR23-6 [BBOF]
78459
78532
+
Cys
GCA
[ENA]
¡û
>W1511453302
JVFA01000049
Betaproteobacteria
Eikenella corrodens 491_NMEN [JVFA]
191
264
+
Cys
GCA
[ENA]
¡û
>W1511683813
LFLT01000002
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
99133
99206
+
Cys
GCA
[ENA]
¡û
>W11175905
AFWQ01000003
Betaproteobacteria
Neisseria weaveri LMG 5135 [AFWQ]
128168
128241
+
Cys
GCA
[ENA]
¡û
>W11175974
AFWR01000034
Betaproteobacteria
Neisseria weaveri ATCC 51223 [AFWR]
62943
62870
-
Cys
GCA
[ENA]
¡û
>C161109158
LT571436
Betaproteobacteria
Neisseria weaveri NCTC13585 [LT571436]
1447167
1447094
-
Cys
GCA
[Ensembl]
¡û
>W121085163
AKJA01000051
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
40384
40457
+
Cys
GCA
[ENA]
¡û
>W1610070411
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
196580
196653
+
Cys
GCA
[ENA]
¡û
>W1611007022
LXSE01000033
Betaproteobacteria
Eikenella corrodens [LXSE]
187186
187259
+
Cys
GCA
[ENA]
¡û
>W1611007054
LXSF01000005
Betaproteobacteria
Eikenella corrodens [LXSF]
946
873
-
Cys
GCA
[ENA]
¡û
>W1611007088
LXSG01000014
Betaproteobacteria
Eikenella corrodens [LXSG]
57472
57399
-
Cys
GCA
[ENA]
¡û
>W1611007148
LXSH01000022
Betaproteobacteria
Eikenella corrodens [LXSH]
195967
195894
-
Cys
GCA
[ENA]
¡û
>W1611007188
LXSI01000005
Betaproteobacteria
Eikenella corrodens [LXSI]
946
873
-
Cys
GCA
[ENA]
¡û
>W1611007220
LXSJ01000013
Betaproteobacteria
Eikenella corrodens [LXSJ]
38241
38168
-
Cys
GCA
[ENA]
¡û
>W1611007260
LXSK01000001
Betaproteobacteria
Eikenella sp. NML01-A-086 [LXSK]
215377
215450
+
Cys
GCA
[ENA]
¡û
>W1611007337
LXSL01000028
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
33296
33223
-
Cys
GCA
[ENA]
¡û
>W1611007376
LXSM01000016
Betaproteobacteria
Eikenella sp. NML03-A-027 [LXSM]
208990
209063
+
Cys
GCA
[ENA]
¡û
>W1611007410
LXSN01000004
Betaproteobacteria
Eikenella sp. NML070372 [LXSN]
830508
830435
-
Cys
GCA
[ENA]
¡û
>W1611007437
LXSO01000002
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
120271
120344
+
Cys
GCA
[ENA]
¡û
>W1611007475
LXSP01000001
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
120116
120189
+
Cys
GCA
[ENA]
¡û
>W1611007528
LXSQ01000014
Betaproteobacteria
Eikenella halliae NML130454 [LXSQ]
133099
133172
+
Cys
GCA
[ENA]
¡û
>W1611007595
LXSR01000015
Betaproteobacteria
Eikenella sp. NML96-A-049 [LXSR]
830482
830409
-
Cys
GCA
[ENA]
¡û
>W1611007641
LXSS01000013
Betaproteobacteria
Eikenella sp. NML97-A-109 [LXSS]
517497
517424
-
Cys
GCA
[ENA]
¡û
>W1611007649
LXST01000001
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
120181
120254
+
Cys
GCA
[ENA]
¡û
>W1710067784
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
196580
196653
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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