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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412370 (98 seq.)
>W1710860385
LMCV01000017
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
69282
69356
+
Lys
CTT
[ENA]
¡û
>W1710878474
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
2222910
2222836
-
Lys
CTT
[ENA]
¡û
>W1711055270
LRUN01000075
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
4695
4769
+
Arg
CCT
[ENA]
¡û
>W1711124706
LUKJ01000003
Gammaproteobacteria
Pseudomonas fluorescens [LUKJ]
5533012
5533086
+
Lys
CTT
[ENA]
¡û
>W1711138823
LVEJ01000013
Gammaproteobacteria
Pseudomonas fluorescens [LVEJ]
95410
95336
-
Lys
CTT
[ENA]
¡û
>W1711318723
MAYQ01000007
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
769854
769780
-
Lys
CTT
[ENA]
¡û
>W1711354501
MDFH01000016
Gammaproteobacteria
Pseudomonas simiae [MDFH]
272576
272502
-
Lys
CTT
[ENA]
¡û
>W1711499473
MKQJ01000013
Gammaproteobacteria
Pseudomonas koreensis [MKQJ]
347894
347820
-
Lys
CTT
[ENA]
¡û
>W1712005104
NEHH01000008
Gammaproteobacteria
Pseudomonas sp. R45(2017) [NEHH]
276987
276913
-
Lys
CTT
[ENA]
¡û
>W1712005307
NEHK01000015
Gammaproteobacteria
Pseudomonas sp. R41(2017) [NEHK]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005311
NEHL01000001
Gammaproteobacteria
Pseudomonas sp. R40(2017) [NEHL]
795862
795788
-
Lys
CTT
[ENA]
¡û
>W1712005370
NEHM01000001
Gammaproteobacteria
Pseudomonas sp. R39(2017) [NEHM]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005490
NEHN01000015
Gammaproteobacteria
Pseudomonas sp. R38(2017) [NEHN]
70933
70859
-
Lys
CTT
[ENA]
¡û
>W1712005606
NEHP01000015
Gammaproteobacteria
Pseudomonas sp. R36(2017) [NEHP]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005800
NEHS01000016
Gammaproteobacteria
Pseudomonas sp. R33(2017) [NEHS]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005922
NEHU01000015
Gammaproteobacteria
Pseudomonas sp. R31(2017) [NEHU]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712007601
NEIW01000002
Gammaproteobacteria
Pseudomonas sp. B38(2017) [NEIW]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712007652
NEIX01000001
Gammaproteobacteria
Pseudomonas sp. B37(2017) [NEIX]
1322038
1321964
-
Lys
CTT
[ENA]
¡û
>W1712007714
NEIY01000001
Gammaproteobacteria
Pseudomonas sp. B36(2017) [NEIY]
925433
925359
-
Lys
CTT
[ENA]
¡û
>W1712007843
NEJA01000002
Gammaproteobacteria
Pseudomonas sp. B34(2017) [NEJA]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712007915
NEJB01000006
Gammaproteobacteria
Pseudomonas sp. B33(2017) [NEJB]
343322
343248
-
Arg
CCT
[ENA]
¡û
>W1712007967
NEJC01000002
Gammaproteobacteria
Pseudomonas sp. B32(2017) [NEJC]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712008018
NEJD01000001
Gammaproteobacteria
Pseudomonas sp. B31(2017) [NEJD]
925433
925359
-
Lys
CTT
[ENA]
¡û
>W1712008130
NEJE01000011
Gammaproteobacteria
Pseudomonas sp. B30(2017) [NEJE]
146334
146260
-
Arg
CCT
[ENA]
¡û
>W1712008217
NEJG01000006
Gammaproteobacteria
Pseudomonas sp. B29(2017) [NEJG]
343666
343592
-
Arg
CCT
[ENA]
¡û
>W1712008747
NEJO01000018
Gammaproteobacteria
Pseudomonas sp. B21(2017) [NEJO]
32058
32132
+
Arg
CCT
[ENA]
¡û
>W1712008800
NEJP01000014
Gammaproteobacteria
Pseudomonas sp. B20(2017) [NEJP]
95497
95571
+
Arg
CCT
[ENA]
¡û
>W1712008845
NEJQ01000006
Gammaproteobacteria
Pseudomonas sp. B1(2017) [NEJQ]
343322
343248
-
Arg
CCT
[ENA]
¡û
>W1712009054
NEJT01000014
Gammaproteobacteria
Pseudomonas sp. B17(2017) [NEJT]
95497
95571
+
Arg
CCT
[ENA]
¡û
>W1712009484
NEKA01000007
Gammaproteobacteria
Pseudomonas sp. B16(2017) [NEKA]
32058
32132
+
Arg
CCT
[ENA]
¡û
>WENV180315076
OBKH01011564
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
519
445
-
Lys
CTT
[ENA]
¢þ
>WENV181370898
OFQU01000277
[OFQU] wastewater metagenome; Exp Tend CN 90WW
3012
3086
+
Lys
CTT
[ENA]
¢þ
>WENV181371047
OFQU01011951
[OFQU] wastewater metagenome; Exp Tend CN 90WW
88
162
+
Lys
CTT
[ENA]
¢þ
>WENV181371081
OFQU01019380
[OFQU] wastewater metagenome; Exp Tend CN 90WW
851
922
+
Lys
CTT
[ENA]
¢þ
>WENV181384979
OFRI01024202
[OFRI] wastewater metagenome; Exp Tend VB 90WW
549
623
+
Lys
CTT
[ENA]
¢þ
>WENV181399012
OFSE01006705
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1884
1958
+
Lys
CTT
[ENA]
¢þ
>W141188857
AYMZ01000006
Gammaproteobacteria
Pseudomonas moraviensis R28-S [AYMZ]
46211
46137
-
Lys
CTT
[ENA]
¡û
>WENV170022584
BCQK01022818
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
686
760
+
Lys
CTT
[ENA]
¢þ
>WENV170559743
CXWL01144485
[CXWL] groundwater metagenome; biofilm material
322
248
-
Lys
CTT
[ENA]
¢þ
>WENV170706108
LNAP01001157
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26482
26408
-
Lys
CTT
[ENA]
¢þ
>C181181664
CP029608
Gammaproteobacteria
Pseudomonas kribbensis 46-2 [CP029608]
2691892
2691966
+
Lys
CTT
-
¡û
>C191020117
CP022411
Gammaproteobacteria
Pseudomonas sp. RU47 [CP022411]
3859114
3859040
-
Lys
CTT
-
¡û
>C191027416
CP024646
Gammaproteobacteria
Pseudomonas syringae [CP024646]
2760272
2760346
+
Lys
CTT
-
¡û
>C191051124
CP027218
Gammaproteobacteria
Pseudomonas sp. DTU12.3 [CP027218]
3770445
3770371
-
Lys
CTT
-
¡û
>W1910001683
ARVC01000011
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I2 [ARVC]
681798
681724
-
Arg
CCT
[ENA]
¡û
>W1910621028
LKCF01003268
Gammaproteobacteria
Pseudomonas sp. NZIPFR-PS2 [LKCF]
2022
1948
-
Lys
CTT
[ENA]
¡û
>W1910644675
LUUC01000001
Gammaproteobacteria
Pseudomonas asplenii 4A7 [LUUC]
251280
251206
-
Lys
CTT
[ENA]
¡û
>W1910767892
MOBQ01000003
Gammaproteobacteria
Pseudomonas frederiksbergensis 37A10 [MOBQ]
343633
343559
-
Lys
CTT
[ENA]
¡û
>W1910768185
MOBV01000004
Gammaproteobacteria
Pseudomonas fluorescens 90F12-2 [MOBV]
219468
219542
+
Lys
CTT
[ENA]
¡û
>W1910768325
MOBX01000013
Gammaproteobacteria
Pseudomonas fluorescens 28B5 [MOBX]
758384
758310
-
Lys
CTT
[ENA]
¡û
>W1910768497
MOCA01000006
Gammaproteobacteria
Pseudomonas moraviensis 36B3 [MOCA]
1011786
1011860
+
Lys
CTT
[ENA]
¡û
>W1910768562
MOCB01000009
Gammaproteobacteria
Pseudomonas fluorescens 89F1 [MOCB]
612526
612452
-
Lys
CTT
[ENA]
¡û
>W1910768605
MOCC01000006
Gammaproteobacteria
Pseudomonas fluorescens 90D7A [MOCC]
219478
219552
+
Lys
CTT
[ENA]
¡û
>W1911434031
NXNJ01000008
Gammaproteobacteria
Pseudomonas fluorescens CH267 [NXNJ]
282448
282522
+
Lys
CTT
[ENA]
¡û
>W1911671260
QFZZ01000001
Gammaproteobacteria
Pseudomonas sp. CFBP13508 [QFZZ]
659979
659905
-
Lys
CTT
[ENA]
¡û
>W1911671627
QGAF01000005
Gammaproteobacteria
Pseudomonas fluorescens CFBP13514 [QGAF]
44972
45046
+
Lys
CTT
[ENA]
¡û
>W1911748885
QWFC01000043
Gammaproteobacteria
Pseudomonas sp. 91RF [QWFC]
117216
117142
-
Lys
CTT
[ENA]
¡û
>W1810207752
POFN01000036
Gammaproteobacteria
Pseudomonas sp. FW215-L1 [POFN]
28541
28615
+
Lys
CTT
[ENA]
¡û
>W1810207820
POFO01000029
Gammaproteobacteria
Pseudomonas sp. FW215-R2 [POFO]
28592
28666
+
Lys
CTT
[ENA]
¡û
>W1810207869
POFP01000032
Gammaproteobacteria
Pseudomonas sp. FW215-R4 [POFP]
28599
28673
+
Lys
CTT
[ENA]
¡û
>W1810211064
POHU01000011
Gammaproteobacteria
Pseudomonas sp. FW305-BF6 [POHU]
102700
102774
+
Lys
CTT
[ENA]
¡û
>W1810211142
POHV01000012
Gammaproteobacteria
Pseudomonas sp. GW456-12-10-14-LB2 [POHV]
99119
99193
+
Lys
CTT
[ENA]
¡û
>W1810211195
POHW01000007
Gammaproteobacteria
Pseudomonas sp. FW305-BF15 [POHW]
106002
106076
+
Lys
CTT
[ENA]
¡û
>W1810238954
PPSA01000013
Gammaproteobacteria
Pseudomonas sp. GW456-12-1-14-TSB6 FW104-15G4B [PPSA]
68886
68812
-
Arg
CCT
[ENA]
¡û
>W1810243299
PPXZ02000006
Gammaproteobacteria
Pseudomonas sp. MWU12-2115 [PPXZ]
245538
245612
+
Lys
CTT
[ENA]
¡û
>W1810243548
PPYC02000013
Gammaproteobacteria
Pseudomonas sp. MWU13-2625 [PPYC]
243147
243221
+
Lys
CTT
[ENA]
¡û
>W1810365856
PVUL01000003
Gammaproteobacteria
Pseudomonas simiae 73148/1 [PVUL]
437566
437492
-
Lys
CTT
[ENA]
¡û
>W1810580662
QETJ01000004
Gammaproteobacteria
Pseudomonas sp. NDM [QETJ]
83327
83401
+
Lys
CTT
[ENA]
¡û
>W1810670284
QJRR01000004
Gammaproteobacteria
Pseudomonas koreensis LB-090714 [QJRR]
330556
330630
+
Lys
CTT
[ENA]
¡û
>W1810670416
QJRT01000009
Gammaproteobacteria
Pseudomonas jessenii LBp-160603 [QJRT]
119647
119573
-
Lys
CTT
[ENA]
¡û
>W1810684998
QKYZ01000002
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I6 [QKYZ]
356178
356104
-
Lys
CTT
[ENA]
¡û
>W1810784698
QRAV01000019
Gammaproteobacteria
Pseudomonas jessenii E2333 [QRAV]
2749
2675
-
Lys
CTT
[ENA]
¡û
>W1810884501
QUMR01000003
Gammaproteobacteria
Pseudomonas sp. OV221 [QUMR]
355629
355555
-
Lys
CTT
[ENA]
¡û
>C151007919
CP005975
Gammaproteobacteria
Pseudomonas simiae PICF7 [CP005975]
4923772
4923698
-
Lys
CTT
[Ensembl]
¡û
>C151073934
CP010896
Gammaproteobacteria
Pseudomonas simiae PCL1751 [CP010896]
3012038
3012112
+
Lys
CTT
[Ensembl]
¡û
>W1511350357
JRMC01000003
Gammaproteobacteria
Pseudomonas simiae 2-36 [JRMC]
462462
462388
-
Lys
CTT
[ENA]
¡û
>W1511366861
JSFK01000023
Gammaproteobacteria
Pseudomonas chlororaphis EA105 [JSFK]
70947
70873
-
Lys
CTT
[ENA]
¡û
>W1511400064
JTGG01000020
Gammaproteobacteria
Pseudomonas fluorescens SF39a [JTGG]
88529
88603
+
Lys
CTT
[ENA]
¡û
>W1511400103
JTGH01000017
Gammaproteobacteria
Pseudomonas fluorescens SF4c [JTGH]
97705
97779
+
Arg
CCT
[ENA]
¡û
>W1511509092
JXQT01000042
Gammaproteobacteria
Pseudomonas simiae MEB105 [JXQT]
916711
916637
-
Lys
CTT
[ENA]
¡û
>W1511625702
LCZE01000022
Gammaproteobacteria
Pseudomonas fluorescens AU11114 [LCZE]
147185
147259
+
Lys
CTT
[ENA]
¡û
>C161036795
CP011566
Gammaproteobacteria
Pseudomonas sp. DR 5-09 [CP011566]
2767317
2767391
+
Arg
CCT
[Ensembl]
¡û
>C161036901
CP011567
Gammaproteobacteria
Pseudomonas sp. GR 6-02 [CP011567]
3284154
3284080
-
Lys
CTT
[Ensembl]
¡û
>C161068231
CP014205
Gammaproteobacteria
Pseudomonas glycinae MS586 [CP014205]
3481285
3481211
-
Arg
CCT
-
¡û
>W121044444
AHZM01000663
Gammaproteobacteria
Pseudomonas sp. R62 [AHZM]
121
47
-
Lys
CTT
[ENA]
¡û
>W121120457
ALYL01000036
Gammaproteobacteria
Pseudomonas fluorescens R124 [ALYL]
10631
10557
-
Lys
CTT
[ENA]
¡û
>W1610086380
CVTK01000040
Gammaproteobacteria
Pseudomonas sp. 28 E 9 [CVTK]
273095
273169
+
Lys
CTT
[ENA]
¡û
>W1610086544
CVTN01000042
Gammaproteobacteria
Pseudomonas sp. 31 R 17 [CVTN]
58263
58189
-
Lys
CTT
[ENA]
¡û
>W1610087261
CVTX01000049
Gammaproteobacteria
Pseudomonas sp. 34 E 7 [CVTX]
9038
8964
-
Lys
CTT
[ENA]
¡û
>W1610620646
LHPA01000016
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
163718
163644
-
Lys
CTT
[ENA]
¡û
>W1610722731
LMCV01000017
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
69282
69356
+
Lys
CTT
[ENA]
¡û
>W1610740820
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
2222910
2222836
-
Lys
CTT
[ENA]
¡û
>W1610896316
LRUN01000075
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
4695
4769
+
Arg
CCT
[ENA]
¡û
>W1610935678
LUKJ01000003
Gammaproteobacteria
Pseudomonas fluorescens [LUKJ]
5533012
5533086
+
Lys
CTT
[ENA]
¡û
>W1610949831
LVEJ01000013
Gammaproteobacteria
Pseudomonas fluorescens [LVEJ]
95410
95336
-
Lys
CTT
[ENA]
¡û
>W1611062066
MAYQ01000007
Gammaproteobacteria
Pseudomonas moraviensis [MAYQ]
769854
769780
-
Lys
CTT
[ENA]
¡û
>W1710556244
FOKB01000005
Gammaproteobacteria
Pseudomonas simiae [FOKB]
193112
193186
+
Lys
CTT
[ENA]
¡û
>W1710748340
LHPA01000016
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
163718
163644
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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