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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412518 (81 seq.)
>W1710853368
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
61641
61714
+
Cys
GCA
[ENA]
¡û
>W1710870405
LMKM01000007
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
483647
483720
+
Cys
GCA
[ENA]
¡û
>W1710871275
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
149702
149629
-
Cys
GCA
[ENA]
¡û
>W1710876333
LMPD01000002
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
690380
690453
+
Cys
GCA
[ENA]
¡û
>W1710877058
LMPU01000008
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
611226
611299
+
Cys
GCA
[ENA]
¡û
>W1710885920
LMXN01000016
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
56054
55981
-
Cys
GCA
[ENA]
¡û
>W1710888328
LMZQ01000014
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
82401
82474
+
Cys
GCA
[ENA]
¡û
>W131167759
ARDN01000003
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
118576
118503
-
Cys
GCA
[ENA]
¡û
>W131179037
ARMB01000053
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
201902
201973
+
Cys
GCA
[ENA]
¡û
>W1711179134
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
152326
152397
+
Cys
GCA
[ENA]
¡û
>W1711220394
LXQK01000173
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
22474
22547
+
Cys
GCA
[ENA]
¡û
>W1711360567
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
178633
178560
-
Cys
GCA
[ENA]
¡û
>W1711704550
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
227822
227895
+
Cys
GCA
[ENA]
¡û
>W1711707908
MSSW01000002
Bacteroidota
Algoriphagus antarcticus [MSSW]
27274
27347
+
Cys
GCA
[ENA]
¡û
>W1712082064
NHOT01000007
Bacteroidota
Pedobacter sp. AJM [NHOT]
20089
20016
-
Cys
GCA
[ENA]
¡û
>C171057610
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
802161
802232
+
Cys
GCA
-
¡û
>C171117335
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
3519853
3519926
+
Cys
GCA
-
¡û
>W141027933
AKZJ01000009
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
171353
171424
+
Cys
GCA
[ENA]
¡û
>WENV181122429
OEFM01011904
[OEFM] marine metagenome; ENVO:00000569 for seawater
274
203
-
Cys
GCA
[ENA]
¢þ
>W141142869
AWRU01000031
Bacteroidota
Pedobacter sp. V48 [AWRU]
13885
13958
+
Cys
GCA
[ENA]
¡û
>W141148151
AWXR01000017
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
27124
27053
-
Cys
GCA
[ENA]
¡û
>W141187597
AYMG01000013
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
145991
145918
-
Cys
GCA
[ENA]
¡û
>W141292012
JAUG01000012
Bacteroidota
Pedobacter borealis DSM 19626 [JAUG]
4351
4424
+
Cys
GCA
[ENA]
¡û
>W141350099
JCKI01000002
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
574939
574866
-
Cys
GCA
[ENA]
¡û
>WENV183745322
PJUL01024475
[PJUL] feces metagenome; Chicken feces enriched on filter paper
289
360
+
Cys
GCA
[ENA]
¢þ
>WENV183746484
POYD01030990
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
886
815
-
Cys
GCA
[ENA]
¢þ
>WENV170012325
APMI01154123
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
273
346
+
Cys
GCA
[ENA]
¢þ
>WENV170613462
FUWD012805967
[FUWD] metagenome; unknown
417
346
-
Cys
GCA
[ENA]
¢þ
>WENV170990678
MWWA01028023
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
649
722
+
Cys
GCA
[ENA]
¢þ
>WENV170991461
MWWA01204006
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
182
255
+
Cys
GCA
[ENA]
¢þ
>WENV170994932
MWWE01090312
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
391
318
-
Cys
GCA
[ENA]
¢þ
>WENV171003208
NNBT01002412
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
19060
19133
+
Cys
GCA
[ENA]
¢þ
>C181094383
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
216977
216906
-
Cys
GCA
-
¡û
>C181187358
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
4155667
4155594
-
Cys
GCA
-
¡û
>C191226451
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5761193
5761266
+
Cys
GCA
-
¡û
>W09109607
ABUJ01000033
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
4590
4663
+
Cys
GCA
[ENA]
¡û
>W1910664194
MBTA01000023
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
296173
296102
-
Cys
GCA
[ENA]
¡û
>W1911496550
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
527268
527339
+
Cys
GCA
[ENA]
¡û
>W1911647655
QAJQ01000011
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
114538
114611
+
Cys
GCA
[ENA]
¡û
>W1810405035
PYLS01000007
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
103070
102997
-
Cys
GCA
[ENA]
¡û
>W1810503868
QBKL01000015
Bacteroidota
Pedobacter sp. OK291 [QBKL]
190385
190312
-
Cys
GCA
[ENA]
¡û
>W1810606109
QGNY01000004
Bacteroidota
Pedobacter paludis R-8 [QGNY]
295672
295745
+
Cys
GCA
[ENA]
¡û
>W1810606176
QGNZ01000004
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
642321
642248
-
Cys
GCA
[ENA]
¡û
>W1810676173
QKLU01000010
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
71404
71477
+
Cys
GCA
[ENA]
¡û
>W1810686043
QKZT01000017
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
17569
17498
-
Cys
GCA
[ENA]
¡û
>W1810686070
QKZU01000008
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
177950
178021
+
Cys
GCA
[ENA]
¡û
>W1810693479
QLLK01000005
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
339544
339473
-
Cys
GCA
[ENA]
¡û
>W1810720099
QNQU01000047
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
8497
8424
-
Cys
GCA
[ENA]
¡û
>W1810761075
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
676935
676862
-
Cys
GCA
[ENA]
¡û
>W1810885299
QUNF01000005
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
211358
211287
-
Cys
GCA
[ENA]
¡û
>W1810885519
QUNJ01000004
Bacteroidota
Pedobacter sp. YR510 [QUNJ]
678475
678402
-
Cys
GCA
[ENA]
¡û
>W1810885614
QUNL01000024
Bacteroidota
Pedobacter sp. OV280 [QUNL]
82420
82493
+
Cys
GCA
[ENA]
¡û
>W1511390975
JSYN01000027
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
36000
36073
+
Cys
GCA
[ENA]
¡û
>W11138418
AEIH01000173
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
34344
34417
+
Cys
GCA
[ENA]
¡û
>W1511646569
LECU01000005
Bacteroidota
Pedobacter sp. BMA [LECU]
474940
475013
+
Cys
GCA
[ENA]
¡û
>C161049143
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5076010
5076081
+
Cys
GCA
[Ensembl]
¡û
>W121063678
AJLG01000124
Bacteroidota
Pedobacter agri PB92 [AJLG]
9394
9321
-
Cys
GCA
[ENA]
¡û
>W1610050125
BBFN01000038
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
3916
3845
-
Cys
GCA
[ENA]
¡û
>C131003314
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2473879
2473806
-
Cys
GCA
[Ensembl]
¡û
>W1610716492
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
61641
61714
+
Cys
GCA
[ENA]
¡û
>W1610732751
LMKM01000007
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
483647
483720
+
Cys
GCA
[ENA]
¡û
>W1610733621
LMLE01000006
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
149702
149629
-
Cys
GCA
[ENA]
¡û
>W1610738679
LMPD01000002
Bacteroidota
Pedobacter sp. Leaf176 [LMPD]
690380
690453
+
Cys
GCA
[ENA]
¡û
>W1610739404
LMPU01000008
Bacteroidota
Pedobacter sp. Leaf194 [LMPU]
611226
611299
+
Cys
GCA
[ENA]
¡û
>W1610747846
LMXN01000016
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
56054
55981
-
Cys
GCA
[ENA]
¡û
>W1610748706
LMZQ01000014
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
82401
82474
+
Cys
GCA
[ENA]
¡û
>W1610987086
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
152326
152397
+
Cys
GCA
[ENA]
¡û
>W1611004866
LXQK01000173
Bacteroidota
Marivirga sp. ANT-B6 [LXQK]
22474
22547
+
Cys
GCA
[ENA]
¡û
>W1730012964
LGEL01000042
Bacteroidota
Pedobacter panaciterrae [LGEL]
245
172
-
Cys
GCA
[ENA]
¡û
>W1710046524
BBFN01000038
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
3916
3845
-
Cys
GCA
[ENA]
¡û
>W1710512302
FMZH01000009
Bacteroidota
Pedobacter soli [FMZH]
46103
46030
-
Cys
GCA
[ENA]
¡û
>W1710516055
FNCH01000008
Bacteroidota
Pedobacter terrae [FNCH]
118676
118749
+
Cys
GCA
[ENA]
¡û
>W1710522161
FNGZ01000006
Bacteroidota
Pedobacter antarcticus [FNGZ]
119008
118937
-
Cys
GCA
[ENA]
¡û
>W1710532195
FNQC01000004
Bacteroidota
Rhodonellum ikkaensis [FNQC]
158794
158723
-
Cys
GCA
[ENA]
¡û
>W1710551653
FOGG01000002
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
180402
180475
+
Cys
GCA
[ENA]
¡û
>W1710555449
FOJM01000005
Bacteroidota
Pedobacter suwonensis [FOJM]
12426
12353
-
Cys
GCA
[ENA]
¡û
>W1710556720
FOKK01000026
Bacteroidota
Algoriphagus aquimarinus [FOKK]
26894
26821
-
Cys
GCA
[ENA]
¡û
>W1710560857
FONS01000003
Bacteroidota
Pedobacter antarcticus [FONS]
390289
390360
+
Cys
GCA
[ENA]
¡û
>W1710563347
FOPP01000004
Bacteroidota
Pedobacter insulae [FOPP]
185238
185167
-
Cys
GCA
[ENA]
¡û
>W1710577972
FPBF01000002
Bacteroidota
Algoriphagus locisalis [FPBF]
85006
85077
+
Cys
GCA
[ENA]
¡û
>W1710606376
FWXT01000004
Bacteroidota
Pedobacter africanus [FWXT]
125800
125727
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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